BAC Information

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BAC

Clone NameB6Ng01-016E06
Chromosome14 (Build37)
Map Location 76,290,819 - 76,467,313
singlet/doubletdoublet
Overlap geneGtf2f2, LOC668504, Kctd4
Upstream geneLrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852
Downstream gene1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016E06.bB6Ng01-016E06.g
ACCDH850281DH850282
length1,0981,112
definitionDH850281|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E06, 5' end.DH850282|Mus musculus domesticus DNA, BAC clone: B6Ng01-016E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,466,214 - 76,467,313)(76,290,819 - 76,291,930)
sequence
gaattctgtccaagtcacttggttttgatttaatctgttctttttttaat
ggctgggtaatgattcatggtgttgatatatcataaagtatttggccagg
ggctttgtttcacaatgaatactgccttaataacatctatgttcatgtgt
ctttgtgaattaatggctttatttccttgggacaaattcccaggagagag
cttgctggggcaaaagtcacatgaatttttaattttaataaatattaccc
ttggagccattctttttttaaatctctttctcacatcttttcccaattcc
agcttctataattaaaaggctaaaatgttttagatcaaattttataagct
tgtgttgatttgtaagagtataataaattataacaaagagacgtcgacat
tattttcaaagactcaactaggaaaaaaaaacccttcctgcaggtggtca
aatgaaggctaggcctgcagatatgacctttcctgctcctgtatttaatc
acaatgtgtgttcaaaaacaccctagcactatggcaactgaagattatca
gcagcaaattacataaccctctgccaatgtttcccaggcaatttattaca
ggagatctgcattccccaggcatactctgtcccaaaatcccatgctgagg
accctccgttcattgcacactgtcgataaagctgccaccagtggtagatg
ctggactagagagtgagcagaatggcagtgtataagacctacaaggcccc
actcacagagctgacctcctggatgaagaaaaatattaaacagcaagtta
catgtgtgtttgcatgatatttgtttgtttgtttgttgtgctagaaattg
aattcaaggccttgtatacatgttctttcattaaggtccgcattcgtccc
cataatcacatatttttgttgtgctaaactatgcataacagttgctttcc
ttgccattttatgagagagacgctgatgaaccctgtgggtattgtgctaa
gcaaacagctagttacacagcaaatactgtaagaatcccatttatatgtt
accagaaggggttggaggtcacagaaaacaagagcaaattgtagttgc
gaattctttttctttctctcccctcaccctgtaagaactaactgaaagag
ccttgaggaggacaggaccaagaaaccactgtgtggccgaggcaaacatt
tggggcacagtgaaatggcagaagcaggtggctttacaggaggggcaaat
gatgctaaagtcacacgaggaacagttattccccagagctcacgtgcctg
tccggtttctgcctcctgatctcagtgggatgcagataggtgagttttag
cgcagggcctctgccgtgtgcagtcttttgatgggaccacagagcaaagc
cttcttcagaccacttttgaaccagttgtaaaaccaggaggacattagaa
attagtttcccaacctccccgaggtcgtttgaataagaatggctcctcta
ggtgcatatatttgagtggtcaccagagagtgaaaatgataaagaggtgt
gtccttgttgcaggaagtttgatactccaggtggactctaaggtttccaa
agctcacactaggcccagttctcccgcccctctcacctggcctgaagatc
gggatgtagccctctatgactgctccagtgagataggtgctgccaggctt
ccgatgtaacggaccaagcttcttaaactgtaagcaagcccccaactaca
tgtattcttttgtaagagttgccttgattatggcgtctctttccagcaat
agaacagagactaagcacaaaggtgacctttcaccaagcctccgcccaac
cactccctcaaaccagagcctctccatcttctgtgattggcaacacggac
accttaaccatttgatacagatgaaggactgcttgaagcatgtgagacat
caactgtaatttcttggcttctttactggtgtaccttgatcaacacatac
actttctctcaggaggactcaactgaaacaaccgaaaagaaccattgaac
cactattgaaactgatcccgtggcagggacgtagaccagtggcagaattg
cacttcagcactttgtgaggccctgattcagttcggagtactcccgggtc
tgtagttgcagcagttacctgtagtcttgggtcacctcaggaggcttaag
gccaagtttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_76466214_76467313
seq2: B6Ng01-016E06.b_40_1137 (reverse)

seq1  GCAACTACCATTTTGCTTCTTG-TCTCTGTGACCT-CAACCCCTCTGGGT  48
      ||||||| || ||||| ||||| | |||||||||| ||||||||   |||
seq2  GCAACTA-CAATTTGC-TCTTGTTTTCTGTGACCTCCAACCCCTTCTGGT  48

seq1  AACATATAAATGGGA-TCTTACAGTATTTGCTGTTGTAACTAGCTTGTTT  97
      ||||||||||||||| ||||||||||||||||| |||||||||||   ||
seq2  AACATATAAATGGGATTCTTACAGTATTTGCTG-TGTAACTAGCT--GTT  95

seq1  TGCTTAGCACAATACCCACAGGGTTCATCAGCGTCTCTCTCATAAAATGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCACAATACCCACAGGGTTCATCAGCGTCTCTCTCATAAAATGG  145

seq1  CAAGGAAAGCAACTGTTATGCATAGTTTAGCACAACAAAAATATGTGATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGCAACTGTTATGCATAGTTTAGCACAACAAAAATATGTGATT  195

seq1  ATGGGGACGAATGCGGACCTTAATGAAAGAACATGTATACAAGGCCTTGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGACGAATGCGGACCTTAATGAAAGAACATGTATACAAGGCCTTGA  245

seq1  ATTCAATTTCTAGCACAACAAACAAACAAACAAATATCATGCAAACACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTCTAGCACAACAAACAAACAAACAAATATCATGCAAACACAC  295

seq1  ATGTAACTTGCTGTTTAATATTTTTCTTCATCCAGGAGGTCAGCTCTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTTGCTGTTTAATATTTTTCTTCATCCAGGAGGTCAGCTCTGTG  345

seq1  AGTGGGGCCTTGTAGGTCTTATACACTGCCATTCTGCTCACTCTCTAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGCCTTGTAGGTCTTATACACTGCCATTCTGCTCACTCTCTAGTC  395

seq1  CAGCATCTACCACTGGTGGCAGCTTTATCGACAGTGTGCAATGAACGGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTACCACTGGTGGCAGCTTTATCGACAGTGTGCAATGAACGGAG  445

seq1  GGTCCTCAGCATGGGATTTTGGGACAGAGTATGCCTGGGGAATGCAGATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCAGCATGGGATTTTGGGACAGAGTATGCCTGGGGAATGCAGATC  495

seq1  TCCTGTAATAAATTGCCTGGGAAACATTGGCAGAGGGTTATGTAATTTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTAATAAATTGCCTGGGAAACATTGGCAGAGGGTTATGTAATTTGC  545

seq1  TGCTGATAATCTTCAGTTGCCATAGTGCTAGGGTGTTTTTGAACACACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATAATCTTCAGTTGCCATAGTGCTAGGGTGTTTTTGAACACACAT  595

seq1  TGTGATTAAATACAGGAGCAGGAAAGGTCATATCTGCAGGCCTAGCCTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAAATACAGGAGCAGGAAAGGTCATATCTGCAGGCCTAGCCTTC  645

seq1  ATTTGACCACCTGCAGGAAGGGTTTTTTTTTCCTAGTTGAGTCTTTGAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCACCTGCAGGAAGGGTTTTTTTTTCCTAGTTGAGTCTTTGAAA  695

seq1  ATAATGTCGACGTCTCTTTGTTATAATTTATTATACTCTTACAAATCAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCGACGTCTCTTTGTTATAATTTATTATACTCTTACAAATCAAC  745

seq1  ACAAGCTTATAAAATTTGATCTAAAACATTTTAGCCTTTTAATTATAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTATAAAATTTGATCTAAAACATTTTAGCCTTTTAATTATAGAA  795

seq1  GCTGGAATTGGGAAAAGATGTGAGAAAGAGATTTAAAAAAAGAATGGCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAATTGGGAAAAGATGTGAGAAAGAGATTTAAAAAAAGAATGGCTC  845

seq1  CAAGGGTAATATTTATTAAAATTAAAAATTCATGTGACTTTTGCCCCAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTAATATTTATTAAAATTAAAAATTCATGTGACTTTTGCCCCAGC  895

seq1  AAGCTCTCTCCTGGGAATTTGTCCCAAGGAAATAAAGCCATTAATTCACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCTCCTGGGAATTTGTCCCAAGGAAATAAAGCCATTAATTCACA  945

seq1  AAGACACATGAACATAGATGTTATTAAGGCAGTATTCATTGTGAAACAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACATGAACATAGATGTTATTAAGGCAGTATTCATTGTGAAACAAA  995

seq1  GCCCCTGGCCAAATACTTTATGATATATCAACACCATGAATCATTACCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGCCAAATACTTTATGATATATCAACACCATGAATCATTACCCA  1045

seq1  GCCATTAAAAAAAGAACAGATTAAATCAAAACCAAGTGACTTGGACAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAAAAAAAGAACAGATTAAATCAAAACCAAGTGACTTGGACAGAA  1095

seq1  TTC  1100
      |||
seq2  TTC  1098

seq1: chr14_76290819_76291930
seq2: B6Ng01-016E06.g_66_1177

seq1  GAATTCTTTTTCTTTCTCTCCCCTCACCCTGTAAGAACTAACTGAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTTCTCTCCCCTCACCCTGTAAGAACTAACTGAAAGAG  50

seq1  CCTTGAGGAGGACAGGACCAAGAAACCACTGTGTGGCCGAGGCAAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGAGGACAGGACCAAGAAACCACTGTGTGGCCGAGGCAAACATT  100

seq1  TGGGGCACAGTGAAATGGCAGAAGCAGGTGGCTTTACAGGAGGGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCACAGTGAAATGGCAGAAGCAGGTGGCTTTACAGGAGGGGCAAAT  150

seq1  GATGCTAAAGTCACACGAGGAACAGTTATTCCCCAGAGCTCACGTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAAGTCACACGAGGAACAGTTATTCCCCAGAGCTCACGTGCCTG  200

seq1  TCCGGTTTCTGCCTCCTGATCTCAGTGGGATGCAGATAGGTGAGTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTTTCTGCCTCCTGATCTCAGTGGGATGCAGATAGGTGAGTTTTAG  250

seq1  CGCAGGGCCTCTGCCGTGTGCAGTCTTTTGATGGGACCACAGAGCAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGCCTCTGCCGTGTGCAGTCTTTTGATGGGACCACAGAGCAAAGC  300

seq1  CTTCTTCAGACCACTTTTGAACCAGTTGTAAAACCAGGAGGACATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGACCACTTTTGAACCAGTTGTAAAACCAGGAGGACATTAGAA  350

seq1  ATTAGTTTCCCAACCTCCCCGAGGTCGTTTGAATAAGAATGGCTCCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTCCCAACCTCCCCGAGGTCGTTTGAATAAGAATGGCTCCTCTA  400

seq1  GGTGCATATATTTGAGTGGTCACCAGAGAGTGAAAATGATAAAGAGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATATATTTGAGTGGTCACCAGAGAGTGAAAATGATAAAGAGGTGT  450

seq1  GTCCTTGTTGCAGGAAGTTTGATACTCCAGGTGGACTCTAAGGTTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGTTGCAGGAAGTTTGATACTCCAGGTGGACTCTAAGGTTTCCAA  500

seq1  AGCTCACACTAGGCCCAGTTCTCCCGCCCCTCTCACCTGGCCTGAAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACACTAGGCCCAGTTCTCCCGCCCCTCTCACCTGGCCTGAAGATC  550

seq1  GGGATGTAGCCCTCTATGACTGCTCCAGTGAGATAGGTGCTGCCAGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCCCTCTATGACTGCTCCAGTGAGATAGGTGCTGCCAGGCTT  600

seq1  CCGATGTAACGGACCAAGCTTCTTAAACTGTAAGCAAGCCCCCAACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTAACGGACCAAGCTTCTTAAACTGTAAGCAAGCCCCCAACTACA  650

seq1  TGTATTCTTTTGTAAGAGTTGCCTTGATTATGGCGTCTCTTTCCAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTTTGTAAGAGTTGCCTTGATTATGGCGTCTCTTTCCAGCAAT  700

seq1  AGAACAGAGACTAAGCACAAAGGTGACCTTTCACCAAGCCTCCGCCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAGACTAAGCACAAAGGTGACCTTTCACCAAGCCTCCGCCCAAC  750

seq1  CACTCCCTCAAACCAGAGCCTCTCCATCTTCTGTGATTGGCAACACGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTCAAACCAGAGCCTCTCCATCTTCTGTGATTGGCAACACGGAC  800

seq1  ACCTTAACCATTTGATACAGATGAAGGACTGCTTGAAGCATGTGAGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACCATTTGATACAGATGAAGGACTGCTTGAAGCATGTGAGACAT  850

seq1  CAACTGTAATTTCTTGGCTTCTTTACTGGTGTACCTTGATCAACACATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAATTTCTTGGCTTCTTTACTGGTGTACCTTGATCAACACATAC  900

seq1  ACTTTCTCTCAGGAGGACTCAACTGAAAACAACCGAAAAGAACCATTTGA  950
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  ACTTTCTCTCAGGAGGACTCAACTG-AAACAACCGAAAAGAACCA-TTGA  948

seq1  ACCACTATTGAAACTGATCCCGTGGGCAGGGGACGTAGACCAGTGGCAGA  1000
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  ACCACTATTGAAACTGATCCCGT-GGCA-GGGACGTAGACCAGTGGCAGA  996

seq1  A-TGCAC-TCAGCAC-TTGTGAAGCCCTGGATTCAGTTCGGAGTACTCC-  1046
      | ||||| ||||||| |||||| ||||| |||||||||||||||||||| 
seq2  ATTGCACTTCAGCACTTTGTGAGGCCCT-GATTCAGTTCGGAGTACTCCC  1045

seq1  -GGTCTGTAGTTTGGCAGCAGTTACCTGTAGTCTT-GGTCA-CTCAGGAG  1093
       |||||||||||  ||||||||||||||||||||| ||||| ||||||||
seq2  GGGTCTGTAGTT--GCAGCAGTTACCTGTAGTCTTGGGTCACCTCAGGAG  1093

seq1  GC-TAAGGCACAAGTTTGGC  1112
      || |||||| ||||||||||
seq2  GCTTAAGGC-CAAGTTTGGC  1112