BAC Information

Click to search

BAC

Clone NameB6Ng01-017M18
Chromosome14 (Build37)
Map Location 58,148,042 - 58,287,173
singlet/doubletdoublet
Overlap geneIl17d, N6amt2, Xpo4
Upstream geneCenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88
Downstream geneLats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017M18.bB6Ng01-017M18.g
ACCDH851377DH851378
length1,010751
definitionDH851377|Mus musculus domesticus DNA, BAC clone: B6Ng01-017M18, 5' end.DH851378|Mus musculus domesticus DNA, BAC clone: B6Ng01-017M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,148,042 - 58,149,051)(58,286,424 - 58,287,173)
sequence
gaattcaggttttaaagcaggcaccgagctatcagctggctgtttggttt
taggacagctgggtctccagttggaagaaaatatggttggatctcgctcc
tgtgtgacaacaaattccagatgattggaagatttaagtgtgaaaaataa
ggccacaaagaggaagaaaaacacgaacaattttatttataatcttggta
tggaggaggcttgtttagtagctcacagccccagacaccataaaagataa
gaccaagtaacgtggttacataattacatgctgtgctgtcttgtggaaat
aaaagagtgcagggcaactcatgtcactaagggctcctttcccaatgagc
tcccacaaaccaataaagccagtgacatcatgggaaggtgggccaaggtc
agggcacatgcagggaaggaaaaccacgtggtctgactctctctctcagt
gaagagctgattactgcagtcaagggagcaaaacacatggaaaccacagc
gagaagctgttctgtgcagccatcggggagctgctttgacaaaggcgggg
gaagaaggaagcccacatcctggcgcggctgaggggtgtgaattgggatg
acttgggaaggaggaaacagggactgtaattatcaaaaatatgtcttgag
aagggatcttgctggcttcatgctctgggctaaagtgatctcctgcctcc
acctcctgaggttgcaggtgcacccctgtgcctggctcagtctcagtcat
tatcactttgacccaatgaatcggctttaccagcatctctcctgcaaacc
caggtgtccacacaccaaatgactggtgggaaaggactttagtcattgct
gtagtggcaagggtggaaggtcatcacgatgtccactaagaaatagggag
ctgcataaaacagcaatgaagagaagatagctttcagatcactttaataa
gtcgtccttcatgaagggaaagttctgatcagcacctgccacatttggtg
ctcaagagaa
gaattcaacttacacacttgttctccagcgcttgctcagcttgttttctt
ataaaccacgatcatctatcccaagggtggcaccacccacaatagactag
gccctcccatagaaagcacgaattaagaaaatgcccacagacatgcccta
ggacaacctggtggagacaattccttttctcagatggctctagtttgtac
cgagctgacaaaaaactaagcagtacatttcctcagctccacagaaatgc
ttttatcagtcagctttgcacaggttactagtgggaaaaatacaagctcc
tttcgcttatagttttggaggttcaaagttcaagactaggtagtggtgga
tgttgttaggtctctgtgaaggtggtgaatcacgacagaagtgcatctca
gagtgagcagcagtcagacttcaaggcaaagtggagaaactggcaacatt
ctacatcctagaaagttttgttttgttttttaatagctgagtgtagtagc
tcacacctttactcatggtactcagaggaggagaaagacagatctcttga
gttcaaagctaacccagtctacagaggtttaggatagccagggctacaca
gagaaaccctgtcttacaaacaaaacaccccaatatagttggaaagaagc
aatcaagatgatacaaaactaattatttaaaatgttagggttttatattc
ttaagatttatttataaataaataaatacgtaagtacactgtaggctgtc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58148042_58149051
seq2: B6Ng01-017M18.b_49_1058

seq1  GAATTCAGGTTTTAAAGCAGGCACCGAGCTATCAGCTGGCTGTTTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTTAAAGCAGGCACCGAGCTATCAGCTGGCTGTTTGGTTT  50

seq1  TAGGACAGCTGGGTCTCCAGTTGGAAGAAAATATGGTTGGATCTCGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAGCTGGGTCTCCAGTTGGAAGAAAATATGGTTGGATCTCGCTCC  100

seq1  TGTGTGACAACAAATTCCAGATGATTGGAAGATTTAAGTGTGAAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACAACAAATTCCAGATGATTGGAAGATTTAAGTGTGAAAAATAA  150

seq1  GGCCACAAAGAGGAAGAAAAACACGAACAATTTTATTTATAATCTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAAAGAGGAAGAAAAACACGAACAATTTTATTTATAATCTTGGTA  200

seq1  TGGAGGAGGCTTGTTTAGTAGCTCACAGCCCCAGACACCATAAAAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGCTTGTTTAGTAGCTCACAGCCCCAGACACCATAAAAGATAA  250

seq1  GACCAAGTAACGTGGTTACATAATTACATGCTGTGCTGTCTTGTGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTAACGTGGTTACATAATTACATGCTGTGCTGTCTTGTGGAAAT  300

seq1  AAAAGAGTGCAGGGCAACTCATGTCACTAAGGGCTCCTTTCCCAATGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGCAGGGCAACTCATGTCACTAAGGGCTCCTTTCCCAATGAGC  350

seq1  TCCCACAAACCAATAAAGCCAGTGACATCATGGGAAGGTGGGCCAAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAACCAATAAAGCCAGTGACATCATGGGAAGGTGGGCCAAGGTC  400

seq1  AGGGCACATGCAGGGAAGGAAAACCACGTGGTCTGACTCTCTCTCTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACATGCAGGGAAGGAAAACCACGTGGTCTGACTCTCTCTCTCAGT  450

seq1  GAAGAGCTGATTACTGCAGTCAAGGGAGCAAAACACATGGAAACCACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCTGATTACTGCAGTCAAGGGAGCAAAACACATGGAAACCACAGC  500

seq1  GAGAAGCTGTTCTGTGCAGCCATCGGGGAGCTGCTTTGACAAAGGCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTGTTCTGTGCAGCCATCGGGGAGCTGCTTTGACAAAGGCGGGG  550

seq1  GAAGAAGGAAGCCCACATCCTGGCGCGGCTGAGGGGTGTGAATTGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAAGCCCACATCCTGGCGCGGCTGAGGGGTGTGAATTGGGATG  600

seq1  ACTTGGGAAGGAGGAAACAGGGACTGTAATTATCAAAAATATGTCTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAAGGAGGAAACAGGGACTGTAATTATCAAAAATATGTCTTGAG  650

seq1  AAGGGATCTTGCTGGCTTCATGCTCTGGGCTAAAGTGATCTCCTGCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATCTTGCTGGCTTCATGCTCTGGGCTAAAGTGATCTCCTGCCTCC  700

seq1  ACCTCCTGAGGTTGCAGGTGCACCCCTGTGCCTGGCTCAGTCTCAGTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGAGGTTGCAGGTGCACCCCTGTGCCTGGCTCAGTCTCAGTCAT  750

seq1  TATCACTTTGACCCAATGAATCGGC-TTACCAGCATCTCTCCTGCAAACC  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATCACTTTGACCCAATGAATCGGCTTTACCAGCATCTCTCCTGCAAACC  800

seq1  CAGGTGTCCACACACCAAATGACTGGTGGGAAAGGACTTTAGTCATTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCCACACACCAAATGACTGGTGGGAAAGGACTTTAGTCATTGCT  850

seq1  GTAGTGGCAAGGGTGGAAGG-CATCACGATGTCCACTAAGAAATAGGGAG  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAGTGGCAAGGGTGGAAGGTCATCACGATGTCCACTAAGAAATAGGGAG  900

seq1  CTGCATAAAACAGCAATGAAGAAGAAGATAGCTTTCAGATCACTTAAATA  948
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  CTGCATAAAACAGCAATGAAG-AGAAGATAGCTTTCAGATCACTTTAATA  949

seq1  AGTCGCCCTCCATGAAGGGAAAAGTTCTGATCAGCACCTGCCACATTT-G  997
      ||||| ||| ||||||||| |||||||||||||||||||||||||||| |
seq2  AGTCGTCCTTCATGAAGGG-AAAGTTCTGATCAGCACCTGCCACATTTGG  998

seq1  TGCTCAAAGAGAA  1010
      ||||| |||||||
seq2  TGCTC-AAGAGAA  1010

seq1: chr14_58286424_58287173
seq2: B6Ng01-017M18.g_68_818 (reverse)

seq1  AGACAG-CTACAGTGTACTTACGTATTTATTTATTTATAAATAAATCTTA  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCTACAGTGTACTTACGTATTTATTTATTTATAAATAAATCTTA  50

seq1  AGAATATAAAACCCTAACATTTTAAATAATTAGTTTTGTATCATCTTGAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAACCCTAACATTTTAAATAATTAGTTTTGTATCATCTTGAT  100

seq1  TGCTTCTTTCCAACTATATTGGGGTGTTTTGTTTGTAAGACAGGGTTTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTTCCAACTATATTGGGGTGTTTTGTTTGTAAGACAGGGTTTCT  150

seq1  CTGTGTAGCCCTGGCTATCCTAAACCTCTGTAGACTGGGTTAGCTTTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGCCCTGGCTATCCTAAACCTCTGTAGACTGGGTTAGCTTTGAA  200

seq1  CTCAAGAGATCTGTCTTTCTCCTCCTCTGAGTACCATGAGTAAAGGTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGATCTGTCTTTCTCCTCCTCTGAGTACCATGAGTAAAGGTGTG  250

seq1  AGCTACTACACTCAGCTATTAAAAAACAAAACAAAACTTTCTAGGATGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTACACTCAGCTATTAAAAAACAAAACAAAACTTTCTAGGATGTA  300

seq1  GAATGTTGCCAGTTTCTCCACTTTGCCTTGAAGTCTGACTGCTGCTCACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGCCAGTTTCTCCACTTTGCCTTGAAGTCTGACTGCTGCTCACT  350

seq1  CTGAGATGCACTTCTGTCGTGATTCACCACCTTCACAGAGACCTAACAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCACTTCTGTCGTGATTCACCACCTTCACAGAGACCTAACAAC  400

seq1  ATCCACCACTACCTAGTCTTGAACTTTGAACCTCCAAAACTATAAGCGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCACTACCTAGTCTTGAACTTTGAACCTCCAAAACTATAAGCGAA  450

seq1  AGGAGCTTGTATTTTTCCCACTAGTAACCTGTGCAAAGCTGACTGATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTTGTATTTTTCCCACTAGTAACCTGTGCAAAGCTGACTGATAAA  500

seq1  AGCATTTCTGTGGAGCTGAGGAAATGTACTGCTTAGTTTTTTGTCAGCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCTGTGGAGCTGAGGAAATGTACTGCTTAGTTTTTTGTCAGCTC  550

seq1  GGTACAAACTAGAGCCATCTGAGAAAAGGAATTGTCTCCACCAGGTTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAACTAGAGCCATCTGAGAAAAGGAATTGTCTCCACCAGGTTGTC  600

seq1  CTAGGGCATGTCTGTGGGCATTTTCTTAATTCGTGCTTTCTATGGGAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCATGTCTGTGGGCATTTTCTTAATTCGTGCTTTCTATGGGAGGG  650

seq1  CCTAGTCTATTGTGGGTGGTGCCACCCTTGGGATAGATGATCGTGGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTATTGTGGGTGGTGCCACCCTTGGGATAGATGATCGTGGTTTA  700

seq1  TAAGAAAACAAGCTGAGCAAGCGCTGGAGAACAAGTGTGTAAGTTGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACAAGCTGAGCAAGCGCTGGAGAACAAGTGTGTAAGTTGAATT  750

seq1  C  750
      |
seq2  C  751