BAC Information

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BAC

Clone NameB6Ng01-018J23
Chromosome14 (Build37)
Map Location 94,201,509 - 94,202,664
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J23.bB6Ng01-018J23.g
ACCDH851969DH851970
length1,134855
definitionDH851969|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J23, 5' end.DH851970|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatgtattcatttcagtatttctcacattttaaataatagtg
taaatataaaatgcaatattgtaaaatctgatataggactaaatatcagt
agtttgtgatgatttttttaacagaaaatacatagttgtttacaaaatat
ttttactaagatatagacatattctgaggagaggtatgccaataaggaaa
ccaaaaagaacttggaagtgcatgacataaatctgtgagtagccagttaa
aacgaaagacattttgagataagtaaaagttagagaagttagggtagatt
tgcaaagtacataaagtgtgttttaatatgttcctattatgttttgcaga
ttactatttagacagttgaaagaaaaacatttgcaaccagtaccaaggaa
tcttggttgagcataacgtctcttattcccagcaagcaagaaagggtctg
tctgacatacatgtgtaccatactgcttcttagactgctcttgcttcttt
ccagctgctactctggactctgaattgtttgaagataagcactatggttg
tagaatatttctcttaaaagagcacctaaaacccattgtgcctttttttc
ccaggaaatgtcatagtcagccctctgaatggtctattcagttcactgta
gcaaataataccaaagtataaaaatataggaaaacacatcaaatctatag
cttgagaaaacatcgttatattgtattgtatctactacaaataaaatcta
ctgaatctatatctatctatctatctatctatctttctatctatctatca
tctatctatctatctatctatctatctatctgtagttttaaatgaataat
gaagtctaagatctggtaatggactcaagacactatagactaaattgaac
atttgaaccataattatacaaacatataaactaacaaaaatgttagtatg
atgatgaatgtttcttcaattactcatacaactccattttatctctcatc
aattttgtacatgctttataggtaagtttttataaatgaaactaagttat
tttatgtatcttttagtttacaaatattgactactttgaaagctagaaat
ctatatctatgaattaataattttgcgtataggg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggagatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgcctcactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaagatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctggccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattatcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaaagactgaagtgtgaacactatgcccctccttagaagtgggg
agcaaaacacccttggaaggagttacagagacaaagttttggagttgaga
taaaaggatggaccatgtagacactaccatatccggggaacccatcccat
atatcagcttccaaatgctgacccctttgcatcactatcaagattgttct
tgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94201509_94202664
seq2: B6Ng01-018J23.b_47_1180

seq1  GAATTCCACATGTATTCATTTCAGTATTTCTCACATTTTAAATAATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGTATTCATTTCAGTATTTCTCACATTTTAAATAATAGTG  50

seq1  TAAATATAAAATGCAATATTGTAAAATCTGATATAGGACTAAATATCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAAAATGCAATATTGTAAAATCTGATATAGGACTAAATATCAGT  100

seq1  AGTTTGTGATGATTTTTTTAACAGAAAATACATAGTTGTTTACAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGATGATTTTTTTAACAGAAAATACATAGTTGTTTACAAAATAT  150

seq1  TTTTACTAAGATATAGACATATTCTGAGGAGAGGTATGCCAATAAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAAGATATAGACATATTCTGAGGAGAGGTATGCCAATAAGGAAA  200

seq1  CCAAAAAGAACTTGGAAGTGCATGACATAAATCTGTGAGTAGCCAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGAACTTGGAAGTGCATGACATAAATCTGTGAGTAGCCAGTTAA  250

seq1  AACGAAAGACATTTTGAGATAAGTAAAAGTTAGAGAAGTTAGGGTAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAGACATTTTGAGATAAGTAAAAGTTAGAGAAGTTAGGGTAGATT  300

seq1  TGCAAAGTACATAAAGTGTGTTTTAATATGTTCCTATTATGTTTTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTACATAAAGTGTGTTTTAATATGTTCCTATTATGTTTTGCAGA  350

seq1  TTACTATTTAGACAGTTGAAAGAAAAACATTTGCAACCAGTACCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTAGACAGTTGAAAGAAAAACATTTGCAACCAGTACCAAGGAA  400

seq1  TCTTGGTTGAGCATAACGTCTCTTATTCCCAGCAAGCAAGAAAGGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGAGCATAACGTCTCTTATTCCCAGCAAGCAAGAAAGGGTCTG  450

seq1  TCTGACATACATGTGTACCATACTGCTTCTTAGACTGCTCTTGCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACATACATGTGTACCATACTGCTTCTTAGACTGCTCTTGCTTCTTT  500

seq1  CCAGCTGCTACTCTGGACTCTGAATTGTTTGAAGATAAGCACTATGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTACTCTGGACTCTGAATTGTTTGAAGATAAGCACTATGGTTG  550

seq1  TAGAATATTTCTCTTAAAAGAGCACCTAAAACCCATTGTGCCTTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATTTCTCTTAAAAGAGCACCTAAAACCCATTGTGCCTTTTTTTC  600

seq1  CCAGGAAATGTCATAGTCAGCCCTCTGAATGGTCTATTCAGTTCACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATGTCATAGTCAGCCCTCTGAATGGTCTATTCAGTTCACTGTA  650

seq1  GCAAATAATACCAAAGTATAAAAATATAGGAAAACACATCAAATCTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAATACCAAAGTATAAAAATATAGGAAAACACATCAAATCTATAG  700

seq1  CTTGAGAAAACATCGTTATATTGTATTGTATCTACTACAAATAAAATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAACATCGTTATATTGTATTGTATCTACTACAAATAAAATCTA  750

seq1  CTGAATCTATATCTATCTATCTATCTATCTATCTTTCTATCTATCTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTATATCTATCTATCTATCTATCTATCTTTCTATCTATCTATCA  800

seq1  TCTATCTATCTATCTATCTATCTATCTATCTGTAGTTTTAAATGAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTGTAGTTTTAAATGAATAAT  850

seq1  GAAGTCTAAGATCTGGTAATGGACTCAAGACACTATAGACTAAATTGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAAGATCTGGTAATGGACTCAAGACACTATAGACTAAATTGAAC  900

seq1  ATTTGAACCATAATTATAACAAACATAATAAACTAACAAAAATGTTAGTA  950
      ||||||||||||||||| |||||||| |||||||||||||||||||||| 
seq2  ATTTGAACCATAATTAT-ACAAACAT-ATAAACTAACAAAAATGTTAGT-  947

seq1  ATGATGATGAATGTTTTCTTCAATTACTCATACAACTCCATTTTTATCTC  1000
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  ATGATGATGAATG-TTTCTTCAATTACTCATACAACTCCA-TTTTATCTC  995

seq1  TCATCAAATTTTGTACATGCTTTATAAGTAAAAGTTTTATAAAATGAAAA  1050
      ||||| |||||||||||||||||||| ||  |||||||   |||||||| 
seq2  TCATC-AATTTTGTACATGCTTTATAGGT--AAGTTTTTATAAATGAAAC  1042

seq1  CTAGTTATTTTATGTATCTTTTAGTTTTACCATATATGACTACTTTGAAA  1100
        |||||||||||||||||||||||||    |||| ||||||||||||||
seq2  TAAGTTATTTTATGTATCTTTTAGTTTACAAATAT-TGACTACTTTGAAA  1091

seq1  GGCTAGGATATCTTATTATATCTTATTTGAATTTATATAAGTGTATGCGT  1150
       |||| || |||    ||||||   | |||||| |||      | |||||
seq2  -GCTA-GAAATC----TATATC---TATGAATTAATA----ATTTTGCGT  1128

seq1  ATAGGG  1156
      ||||||
seq2  ATAGGG  1134


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