BAC Information

Click to search

BAC

Clone NameB6Ng01-019A08
Chromosome14 (Build37)
Map Location 79,607,865 - 79,735,500
singlet/doubletdoublet
Overlap geneAU017455, 1190002H23Rik, Narg1l
Upstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765
Downstream geneMtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A08.bB6Ng01-019A08.g
ACCDH852237DH852238
length1,006105
definitionDH852237|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A08, 5' end.DH852238|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,607,865 - 79,608,877)(79,735,396 - 79,735,500)
sequence
gaattccaaatctcttttcacaagatccgcatggatcatagagccaatgt
atccaatgaggctggcatggcttctgcttctgcaaggaaagtggctttaa
gggtcagggcctcctagggagtatgtggttcctttgcataggtccacaca
ggtcttctgtgaacagagactgtatgacacgtgctataagtcagactccc
caagggatgagctacaggagagagagatcaatgatatttgggttgaaaag
acctagtttcttagcccgctccaccccttccagccacggctacctgagac
accccaaagttcttggatcaggttcttcacccctgaaatgaggacaatcc
catctcccctttatcagagaactgaaataaaataaccaagggactccatc
aaccataagtgaaagcctgtgtaagaggtatttggagattgtccccaaaa
tgtatttattggggtggtttcctgcacacctcaattctggtactgttagc
tgaacttctgaggaacacccttctgggagctttgcttttcttcctagaga
cacaggactgtagagcagccaatgtacaaaatcagcatttgtgcctggcc
agcagcccactgccatcacagcatgctgtcatcccacatccacaaaccag
ggaccagagttctgcacccagtgctatgctttctttctcttcacttctgg
gaagaagacagccatcctctgagagtcttgcttttgtgggaaggccattg
ataccccagaagcaaaagacatttgattttaggtccatggtggaaagtaa
cacctggcattgagagtctccttgaccagttttgcttgagaaccatgaca
tcttgatcaaacatctcagaccttgttcagagcccagagtggcctctttc
cagcaaatgctgccggaggggtgaagatgtcagggcaggtaactgaggta
gccgatctcaacttaactttttgctggacaatggagtccttctctgactt
ctttat
acatcaggtttctttttcactgtacattttaaactggcgtaaaataaaat
atttggatagaaggggttttttgtttgtttgttttttgttttgttttgtt
tggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79607865_79608877
seq2: B6Ng01-019A08.b_45_1050

seq1  GAATTCCAAATCTCTTTTCACAAGATCCGCATGGATCATAGAGCCAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCTCTTTTCACAAGATCCGCATGGATCATAGAGCCAATGT  50

seq1  ATCCAATGAGGCTGGCATGGCTTCTGCTTCTGCAAGGAAAGTGGCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATGAGGCTGGCATGGCTTCTGCTTCTGCAAGGAAAGTGGCTTTAA  100

seq1  GGGTCAGGGCCTCCTAGGGAGTATGTGGTTCCTTTGCATAGGTCCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGGCCTCCTAGGGAGTATGTGGTTCCTTTGCATAGGTCCACACA  150

seq1  GGTCTTCTGTGAACAGAGACTGTATGACACGTGCTATAAGTCAGACTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCTGTGAACAGAGACTGTATGACACGTGCTATAAGTCAGACTCCC  200

seq1  CAAGGGATGAGCTACAGGAGAGAGAGATCAATGATATTTGGGTTGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATGAGCTACAGGAGAGAGAGATCAATGATATTTGGGTTGAAAAG  250

seq1  ACCTAGTTTCTTAGCCCGCTCCACCCCTTCCAGCCACGGCTACCTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTTTCTTAGCCCGCTCCACCCCTTCCAGCCACGGCTACCTGAGAC  300

seq1  ACCCCAAAGTTCTTGGATCAGGTTCTTCACCCCTGAAATGAGGACAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAGTTCTTGGATCAGGTTCTTCACCCCTGAAATGAGGACAATCC  350

seq1  CATCTCCCCTTTATCAGAGAACTGAAATAAAATAACCAAGGGACTCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCCTTTATCAGAGAACTGAAATAAAATAACCAAGGGACTCCATC  400

seq1  AACCATAAGTGAAAGCCTGTGTAAGAGGTATTTGGAGATTGTCCCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAGTGAAAGCCTGTGTAAGAGGTATTTGGAGATTGTCCCCAAAA  450

seq1  TGTATTTATTGGGGTGGTTTCCTGCACACCTCAATTCTGGTACTGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTGGGGTGGTTTCCTGCACACCTCAATTCTGGTACTGTTAGC  500

seq1  TGAACTTCTGAGGAACACCCTTCTGGGAGCTTTGCTTTTCTTCCTAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCTGAGGAACACCCTTCTGGGAGCTTTGCTTTTCTTCCTAGAGA  550

seq1  CACAGGACTGTAGAGCAGCCAATGTACAAAATCAGCATTTGTGCCTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTGTAGAGCAGCCAATGTACAAAATCAGCATTTGTGCCTGGCC  600

seq1  AGCAGCCCACTGCCATCACAGCATGCTGTCATCCCACATCCACAAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCACTGCCATCACAGCATGCTGTCATCCCACATCCACAAACCAG  650

seq1  GGACCAGAGTTCTGCACCCAGTGCTATGCTTTCTTTCTCTTCACTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGTTCTGCACCCAGTGCTATGCTTTCTTTCTCTTCACTTCTGG  700

seq1  GAAGAAGACAGCCATCCTCTGAGAGTCTTGCTTTTGTGGGAAGGCCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACAGCCATCCTCTGAGAGTCTTGCTTTTGTGGGAAGGCCATTG  750

seq1  ATACCCCAGAAGCAAAAGACATTTGATTTTAGGTCCATGGTGGAAGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATACCCCAGAAGCAAAAGACATTTGATTTTAGGTCCATGGTGGAAAGTAA  800

seq1  CACCTGGCATTGAGAGTCTCCTTGACCAGTTTTGCTTGAGAACCATGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCATTGAGAGTCTCCTTGACCAGTTTTGCTTGAGAACCATGACA  850

seq1  TCCTGATCAAACATCTCAGACCTTGTTCAGAGCCCAGAGTGGCCTCTTTC  900
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTGATCAAACATCTCAGACCTTGTTCAGAGCCCAGAGTGGCCTCTTT-  899

seq1  CCAGCAAA-GCTGCCGGAGGGGTGAAGATGTCAGGGCAGGTAACTGAGGT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  CCAGCAAATGCTGCCGGAGGGGTGAAGATGTCAGGGCAGGTAACTGAGG-  948

seq1  TAGCCAGATCCTCAACTTTACTTTTTGCTAGGAGCAAGTGGAGTCCATTC  999
      ||||| ||| |||||||| |||||||||| ||| ||| |||||||| |||
seq2  TAGCC-GAT-CTCAACTTAACTTTTTGCT-GGA-CAA-TGGAGTCC-TTC  992

seq1  TCTGACTTCTTTAT  1013
      ||||||||||||||
seq2  TCTGACTTCTTTAT  1006

seq1: chr14_79735396_79735500
seq2: B6Ng01-019A08.g_74_178 (reverse)

seq1  AACCAAACAAAACAAAACAAAAAACAAACAAACAAAAAACCCCTTCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAAAACAAAACAAAAAACAAACAAACAAAAAACCCCTTCTATC  50

seq1  CAAATATTTTATTTTACGCCAGTTTAAAATGTACAGTGAAAAAGAAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTTATTTTACGCCAGTTTAAAATGTACAGTGAAAAAGAAACCT  100

seq1  GATGT  105
      |||||
seq2  GATGT  105