BAC Information

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BAC

Clone NameB6Ng01-019E03
Chromosome14 (Build37)
Map Location 84,906,778 - 84,995,822
singlet/doubletdoublet
Overlap genePcdh17
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019E03.bB6Ng01-019E03.g
ACCDH852404DH852405
length1801,070
definitionDH852404|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E03, 5' end.DH852405|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,995,643 - 84,995,822)(84,906,778 - 84,907,853)
sequence
gaattcagggagacagggaagaggccatataaaagttcataatattattt
ggggtggggaaagaaacataaaataagaataaaatagaaaagcaggaaga
cacctatgaaaattatataaaaggaggagaatacttttcctaagttcaga
aaagtatgatttagggggatgggggggggg
gaattcactctagctatagagttatgaaactcagggagtgtattatgcac
acagataaagcgggattttggagatgaaaattcacaaatgtacagtcaca
aattcacatcaggagaaaagaaaataaaactttagcatcgcatagaacat
caggataaactattacacagttaaaggtaaaagaaaaaataggtaattat
actagccttgacatccctccccttcccccatctcagatttagttacatag
agctccatcctgacaactgtttagctccaggcacagatcagaagtattag
agataatggcagaattattagattagctgttgccaggatctctcagtgtc
ctagataatgactagctgtggtaaatctgaatgacttcagtctgtgttac
tgctatgtgtgtgtgcattccctttaaggcattgttgttgtgtcaaagag
acatttggatgtttatgtaaacttctggtatgttccattgatttgtgttc
ttaaagtctgtgcccataaaacaatccataccctcactgtctctttttaa
attagggatggggaagatggaggaatctaataatttcctacctttaagag
catattctctcagctctttctgtaattttgattattgatctgtctttctt
tggttaattggtgtgtgccataggaattctttctgcatttgcacatcata
tttcccttttcatttcaagtgtttaatttcagtgtctttgcatatttaac
gttttcattctggacctgagcctttttctcagctttcctatgtgctgcag
ttcacttgcttatctgttgatgagcttttggagtcagctttattgctatg
ctttgtcattttaatttatttgtaaatatgtggctagcttaatattttat
atgtctctttctaccactgcatggattttgttatggttggttgtctcttt
gttaccaaaaaatcacagtgactttctttctcccttttttttttcatagc
ctaaacagcaatgcttgtcaaggaacttattattgttttcattttgagat
aaaaggttccttttcttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84995643_84995822
seq2: B6Ng01-019E03.b_44_223 (reverse)

seq1  CCCCCCCCCCATCCCCCTAAATCATACTTTTCTGAACTTAGGAAAAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCATCCCCCTAAATCATACTTTTCTGAACTTAGGAAAAGTAT  50

seq1  TCTCCTCCTTTTATATAATTTTCATAGGTGTCTTCCTGCTTTTCTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTTTTATATAATTTTCATAGGTGTCTTCCTGCTTTTCTATTTT  100

seq1  ATTCTTATTTTATGTTTCTTTCCCCACCCCAAATAATATTATGAACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTTTATGTTTCTTTCCCCACCCCAAATAATATTATGAACTTTT  150

seq1  ATATGGCCTCTTCCCTGTCTCCCTGAATTC  180
      ||||||||||||||||||||||||||||||
seq2  ATATGGCCTCTTCCCTGTCTCCCTGAATTC  180

seq1: chr14_84906778_84907853
seq2: B6Ng01-019E03.g_68_1137

seq1  GAATTCACTCTAGCTATAGAGTTATGAAACTCAGGGAGTGTATTATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGCTATAGAGTTATGAAACTCAGGGAGTGTATTATGCAC  50

seq1  ACAGATAAAGCGGGATTTTGGAGATGAAAATTCACAAATGTACAGTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAGCGGGATTTTGGAGATGAAAATTCACAAATGTACAGTCACA  100

seq1  AATTCACATCAGGAGAAAAGAAAATAAAACTTTAGCATCGCATAGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATCAGGAGAAAAGAAAATAAAACTTTAGCATCGCATAGAACAT  150

seq1  CAGGATAAACTATTACACAGTTAAAGGTAAAAGAAAAAATAGGTAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAACTATTACACAGTTAAAGGTAAAAGAAAAAATAGGTAATTAT  200

seq1  ACTAGCCTTGACATCCCTCCCCTTCCCCCATCTCAGATTTAGTTACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTTGACATCCCTCCCCTTCCCCCATCTCAGATTTAGTTACATAG  250

seq1  AGCTCCATCCTGACAACTGTTTAGCTCCAGGCACAGATCAGAAGTATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATCCTGACAACTGTTTAGCTCCAGGCACAGATCAGAAGTATTAG  300

seq1  AGATAATGGCAGAATTATTAGATTAGCTGTTGCCAGGATCTCTCAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATGGCAGAATTATTAGATTAGCTGTTGCCAGGATCTCTCAGTGTC  350

seq1  CTAGATAATGACTAGCTGTGGTAAATCTGAATGACTTCAGTCTGTGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAATGACTAGCTGTGGTAAATCTGAATGACTTCAGTCTGTGTTAC  400

seq1  TGCTATGTGTGTGTGCATTCCCTTTAAGGCATTGTTGTTGTGTCAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTGTGTGTGCATTCCCTTTAAGGCATTGTTGTTGTGTCAAAGAG  450

seq1  ACATTTGGATGTTTATGTAAACTTCTGGTATGTTCCATTGATTTGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGATGTTTATGTAAACTTCTGGTATGTTCCATTGATTTGTGTTC  500

seq1  TTAAAGTCTGTGCCCATAAAACAATCCATACCCTCACTGTCTCTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCTGTGCCCATAAAACAATCCATACCCTCACTGTCTCTTTTTAA  550

seq1  ATTAGGGATGGGGAAGATGGAGGAATCTAATAATTTCCTACCTTTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGATGGGGAAGATGGAGGAATCTAATAATTTCCTACCTTTAAGAG  600

seq1  CATATTCTCTCAGCTCTTTCTGTAATTTTGATTATTGATCTGTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTCTCAGCTCTTTCTGTAATTTTGATTATTGATCTGTCTTTCTT  650

seq1  TGGTTAATTGGTGTGTGCCATAGGAATTCTTTCTGCATTTGCACATCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATTGGTGTGTGCCATAGGAATTCTTTCTGCATTTGCACATCATA  700

seq1  TTTCCCTTTTCATTTCAAGTGTTTAATTTCAGTGTCTTTGCATATTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTCATTTCAAGTGTTTAATTTCAGTGTCTTTGCATATTTAAC  750

seq1  GTTTTCATTCTGGACCTGAGCCTTTTTCTCAGCTTTCCTATGTGCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTCTGGACCTGAGCCTTTTTCTCAGCTTTCCTATGTGCTGCAG  800

seq1  TTCACTTGCTTATCTGTTGATGAGCTTTTGGAGTCAGCTTTATTGCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGCTTATCTGTTGATGAGCTTTTGGAGTCAGCTTTATTGCTATG  850

seq1  CTTTGTCATTTTTAATTTATTGTAAAATATGTGGCTAGCTTAATATTTTA  900
      |||||||| ||||||||||||   ||||||||||||||||||||||||||
seq2  CTTTGTCA-TTTTAATTTATTTGTAAATATGTGGCTAGCTTAATATTTTA  899

seq1  TATGTCTCTTTCTACCACTGCATGGATTTTGTTTATGTTGGTTGTCTCTT  950
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TATGTCTCTTTCTACCACTGCATGGATTTTGTTATGGTTGGTTGTCTCTT  949

seq1  TGTTACCCAAAAAATCAACAGTGACTTTCTTTCTCCCTTTTTTTTTTCTA  1000
      ||||| |||||||||| |||||||||||||||||||||||||||||||  
seq2  TGTTA-CCAAAAAATC-ACAGTGACTTTCTTTCTCCCTTTTTTTTTTCAT  997

seq1  TGCACCTAAACAGCAATGCTTGTCAAGGCACTTATAATTGTTTTCATTTT  1050
       |  |||||||||||||||||||||||| |||||| ||||||||||||||
seq2  AG--CCTAAACAGCAATGCTTGTCAAGGAACTTATTATTGTTTTCATTTT  1045

seq1  GGAAGAT-AAAGTTTCATTTTCTTATC  1076
      |  |||| |||| ||| ||||||||||
seq2  G--AGATAAAAGGTTCCTTTTCTTATC  1070