BAC Information

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BAC

Clone NameB6Ng01-020J13
Chromosome14 (Build37)9 (Build37)
Map Location 111,749,708 - 111,750,884111,972,277 - 111,972,646
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020J13.bB6Ng01-020J13.g
ACCDH853353DH853354
length1,132872
definitionDH853353|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J13, 5' end.DH853354|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(111,749,708 - 111,750,884)(111,972,277 - 111,972,646)
sequence
gaattccataaacaagtacaaaccacaaaggcaacagttctctaactctt
ctaaacttctttactcgaacttcatatctccttccagtagagttagagac
actgtaatccctcctcgtcctcaccgagtgggattccaccttgaccctta
agcatggccaagagaatttccacctctaaccttctataggtggatgccct
tattgctgacttctatgcactacacaggcatactgaaaacacaacaaaag
tcacaaacaacaagctaatttcagatgccccatctcactggaaaaaaaga
caaataacaaaaatataagaaactataccctccaaaaatcattaatctca
cttttccaataacttaaatatttgcttttttctgacatgttttatatttt
gtcaccatttaatttccttccactgttttgtgtctttccatcattttcag
ttagaaatagtctcctttctgatgcactgttcatgaattagacaatctcc
aagcaatcactgagaatttgaccggtgagtgttaattaaatgtccacatt
cagaatcgtcaggtaatttttatttattatctgagatactgacattgatt
ttaagaagaggttggatgaattaataagtagctctactgggctagaaatt
aatgctaatatcagatttattcaaataaatattgagagatgttaaattta
tatggaaatagaagttgttttttatttacaatttctaaaatgagaaaaaa
taattacattcaaccaattttattactttaaagattacaatattattatg
caaagctcttaaaattaccaagaaatataactcatgacaatgcactgtgt
aaattttttatatgcatgcataattactaagagaattcagtctcagataa
aatagatgctttagctaacataaatattacatgattaccattgaaacaaa
acatgctttatttatatacccatatatctcttttatagtctagtattatg
acaacaaagttcaacttcttatcttatttttgaataaagttattgatatg
aaatattgatgaatgactgattcatggactatttccttgtgtttatgcat
tcccaatctaaaagtgtgctgttcatcattgt
gaattcacacaaacacacacacagacagacagacacacagacacacatac
acacacagagagagatagagatagagagagagagagacagagacagagac
agatagagacagagacagagacagaaatttgtaaaataaacacacacaat
ttatttgatgatattcaaactttatcttcagttgtaactgaaatttaagg
attggaaacacagtccacagtggagaggacagtgctttaatggttagaag
aattttggaaaagtttaatatcagctatttttcccattctctgtgttaac
ctggttatttcagttggagctattggaaaattttccccagtatatttttt
cattttagtaaatatgaaaaatatgggaataatataaaacaaacatttta
ttttactatttcctaaggcaacctgactggactatagttattttttcaat
ttcttcttttttattaaatattttatttatttatatcccaaatgtcgcct
cccatggtcactccaagagttcttaccccatccccctttctcctctgaaa
gattgctccaccccccccctccagctatccccttgggatattaagtcttt
acaggataagatacatctgctcctactgaggctagacaaggcagtccttg
actacatatgggctacgggccactcaccagtccatgtattctctttggtt
cattgcttagtctctgagagctctgagggggtccaggttagttggtattg
ttgttcttcctatggggttaccatcctcttcagctccttttagtccttcc
cctaaactttcttaggggtctcaacctcagtttggcggttgagtggatct
gtatctgtctcatccagctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111749708_111750884
seq2: B6Ng01-020J13.b_39_1170

seq1  GAATTCCATAAACAAGTACAAACCACAAAGGCAACAGTTCTCTAACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACAAGTACAAACCACAAAGGCAACAGTTCTCTAACTCTT  50

seq1  CTAAACTTCTTTACTCGAACTTCATATCTCCTTCCAGTAGAGTTAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTTCTTTACTCGAACTTCATATCTCCTTCCAGTAGAGTTAGAGAC  100

seq1  ACTGTAATCCCTCCTCGTCCTCACCGAGTGGGATTCCACCTTGACCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATCCCTCCTCGTCCTCACCGAGTGGGATTCCACCTTGACCCTTA  150

seq1  AGCATGGCCAAGAGAATTTCCACCTCTAACCTTCTATAGGTGGATGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCCAAGAGAATTTCCACCTCTAACCTTCTATAGGTGGATGCCCT  200

seq1  TATTGCTGACTTCTATGCACTACACAGGCATACTGAAAACACAACAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGACTTCTATGCACTACACAGGCATACTGAAAACACAACAAAAG  250

seq1  TCACAAACAACAAGCTAATTTCAGATGCCCCATCTCACTGGAAAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACAACAAGCTAATTTCAGATGCCCCATCTCACTGGAAAAAAAGA  300

seq1  CAAATAACAAAAATATAAGAAACTATACCCTCCAAAAATCATTAATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAAAAATATAAGAAACTATACCCTCCAAAAATCATTAATCTCA  350

seq1  CTTTTCCAATAACTTAAATATTTGCTTTTTTCTGACATGTTTTATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAATAACTTAAATATTTGCTTTTTTCTGACATGTTTTATATTTT  400

seq1  GTCACCATTTAATTTCCTTCCACTGTTTTGTGTCTTTCCATCATTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTTAATTTCCTTCCACTGTTTTGTGTCTTTCCATCATTTTCAG  450

seq1  TTAGAAATAGTCTCCTTTCTGATGCACTGTTCATGAATTAGACAATCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATAGTCTCCTTTCTGATGCACTGTTCATGAATTAGACAATCTCC  500

seq1  AAGCAATCACTGAGAATTTGACCGGTGAGTGTTAATTAAATGTCCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCACTGAGAATTTGACCGGTGAGTGTTAATTAAATGTCCACATT  550

seq1  CAGAATCGTCAGGTAATTTTTATTTATTATCTGAGATACTGACATTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCGTCAGGTAATTTTTATTTATTATCTGAGATACTGACATTGATT  600

seq1  TTAAGAAGAGGTTGGATGAATTAATAAGTAGCTCTACTGGGCTAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAGGTTGGATGAATTAATAAGTAGCTCTACTGGGCTAGAAATT  650

seq1  AATGCTAATATCAGATTTATTCAAATAAATATTGAGAGATGTTAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATATCAGATTTATTCAAATAAATATTGAGAGATGTTAAATTTA  700

seq1  TATGGAAATAGAAGTTGTTTTTTATTTACAATTTCTAAAATGAGAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAATAGAAGTTGTTTTTTATTTACAATTTCTAAAATGAGAAAAAA  750

seq1  TAATTACATTCAACCAATTTTATTACTTTAAAGATTACAATATTATTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATTCAACCAATTTTATTACTTTAAAGATTACAATATTATTATG  800

seq1  CAAAGCTCTTAAAATTACCAAGAAATATAACTCATGACAATGCACTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTTAAAATTACCAAGAAATATAACTCATGACAATGCACTGTGT  850

seq1  AAATTTTTTATATGCATGCATAATTACTAAGAGAATTCAGTCTCAGATAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAATTTTTTATATGCATGCATAATTACTAAGAGAATTCAGTCTCAGAT-A  899

seq1  AAATAGATGCTTTTAGCTAACATAAATATTACATGATTACCATTGAAACA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AAATAGATGC-TTTAGCTAACATAAATATTACATGATTACCATTGAAAC-  947

seq1  AAAACATGCTTTATTTAATATAACCCATATTATCTCTTTTTATAGGTTCT  1000
      |||||||||||||||| |||| ||||||| |||||| ||||||||  |||
seq2  AAAACATGCTTTATTT-ATAT-ACCCATA-TATCTC-TTTTATAG--TCT  991

seq1  AGTATTATTGACAACAAAAGGGTTTCAACTTCTTTATCTTATTTTTGAAA  1050
      ||||||| ||||||||||     ||||||||| |||||||||||||||| 
seq2  AGTATTA-TGACAACAAA----GTTCAACTTC-TTATCTTATTTTTGAA-  1034

seq1  TAAAAGTATATGAATATGGAAAATATTGAAATGAAATAGACCTGATATCA  1100
        ||||| |||  |||||  ||||||||  |||||  |   ||||| |||
seq2  -TAAAGT-TATTGATATG--AAATATTG--ATGAATGA---CTGAT-TCA  1074

seq1  TGAGAACTAATATTCTCTTTGTTTGTTTTATATGCATTTTCACAATCTAT  1150
      || ||         || |||  |||| || ||||||  ||| |||||  |
seq2  TG-GA---------CTATTTCCTTGTGTT-TATGCA--TTCCCAATC--T  1109

seq1  AAAAGTGTGTGCTTGTTCATTCATTGT  1177
      |||||||||    |||||| |||||||
seq2  AAAAGTGTG---CTGTTCA-TCATTGT  1132

seq1: chr9_111972277_111972646
seq2: B6Ng01-020J13.g_74_481

seq1  ACACAGACACACACACAGAGACACACCCACTCACACACACGCATGCATGT  50
      ||||| ||||||||||||| | |||  ||| || |||||      |||  
seq2  ACACAAACACACACACAGACAGACAGACACACAGACACA------CATAC  44

seq1  ACATAGAGACAGAGACAGAGTCAGATAGAGTCAGAGACACACAGACACAC  100
      ||| | ||| ||||| ||||  ||| ||||  ||||||| | | | | ||
seq2  ACACACAGAGAGAGATAGAGATAGAGAGAGAGAGAGACAGAGACAGAGAC  94

seq1  ACACACAGACAGACGACACACACATACA-TAGACATATATACACAC-CCA  148
      | | | ||||||| |||| | ||| | | | |  | ||| |||||| | |
seq2  AGATAGAGACAGA-GACAGAGACAGAAATTTGTAAAATAAACACACACAA  143

seq1  TTCACACACAAAGACAGAAACACACATACTCAGAT---ACAAACAGATAC  195
      || |       | |   ||||    ||  |||| |   ||  | |  || 
seq2  TTTATTTGATGATATTCAAAC-TTTATCTTCAGTTGTAACTGAAATTTAA  192

seq1  AGA---CATACACAG-ACATAGATAGAGA------TGCAT--ACACTCAG  233
       ||    | ||||||  || || | ||||      ||| |  |   | ||
seq2  GGATTGGAAACACAGTCCACAG-TGGAGAGGACAGTGCTTTAATGGTTAG  241

seq1  ACACAGACAGATAGACA---CAAATACTCAGATA-------CAT--ACAG  271
      |   |||    | || |     |||| |||| ||       |||   | |
seq2  A---AGAATTTTGGAAAAGTTTAATA-TCAGCTATTTTTCCCATTCTCTG  287

seq1  ACATAGACTG--ACTGACAGACAGACACA----CACACAGAACCCA----  311
         ||  |||    |  |||   ||   |     | |     ||||    
seq2  TGTTAACCTGGTTATTTCAGTTGGAGCTATTGGAAAATTTTCCCCAGTAT  337

seq1  -------CA---TACACAAAAT-AAAGTTATG---CCCTGACAAGACAAT  347
             ||   ||   || || |||  ||||        | || |||| 
seq2  ATTTTTTCATTTTAGTAAATATGAAAAATATGGGAATAATATAAAACAAA  387

seq1  CTGAGAATATTTTACTATTTCCT  370
      |  |   ||||||||||||||||
seq2  C--ATTTTATTTTACTATTTCCT  408