BAC Information

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BAC

Clone NameB6Ng01-021E19
Chromosome14 (Build37)
Map Location 100,440,575 - 100,542,611
singlet/doubletdoublet
Overlap geneKlf12
Upstream gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E19.bB6Ng01-021E19.g
ACCDH853843DH853844
length9561,021
definitionDH853843|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E19, 5' end.DH853844|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,541,656 - 100,542,611)(100,440,575 - 100,441,612)
sequence
gaattcatttccttacagtgtctgagatagcctacatttcgtgcacctca
ttctccattttctcagctatctgttctgggctcgttctcaattgtggcat
cctcctggctcactttctcaatctcacctccatggaaatgatcaccggga
tggctttgaactcacttaagtgatacacagcaaccttcttctacaattcg
aatgctagtgtcctgtctctgcctgcatttctattctccacgagcacccc
acgatggtggactgttcaacaactgggatcttcccttttcagggaacctg
gtcgtccttccaacatcaggttataaagggcattcttgaccgagcctgca
ggtgtagatcacgtttattttggagtcaggatcttagagctgggatggac
ctgatgttgtttctttcttacccatgccactaaatggctgaatttagagg
catgggccacagtacctagctcacatgtcacgacttctatgtgtgtttga
cattttggggaaaattctattttctttttgcactaatgttcacaaaccta
aagtggtttgtgccagttgtaagagatttagagtgaaaaatgggggaggg
tggaccctgtaactggagtaaaaaaattcatttaaattattttgacttat
ctaattgaagtcattgatacacttcacattttcacattataaaagacata
cctaattttgtattttttgagaaacttaaaggaatatgcagtaataattt
ttttaaaaaaaatcttaatgtctcattgtcttctagtcctcggtagccat
aacttctagttttcaagttttcacagcaaatttagcagtgttctttcttt
ccatatgttgtggcatacaggatagattcaaggtctatttctaacgactg
ctgtggacgtttctggctataccgcagtttatctgcctgagacaacctat
atatca
gaattccttcccaaaacttcattacatgagaataagattttttaacactt
catcattagtcagattcaaatagtttgtcattctcaaaattctgttttct
aatgcaaatgggcaggtatagcaaggctcttttgtttctaatagtaagta
ctccaatgcttctcaaataaccccccccccccgaatcaatttaggtagca
aatcctaactggctatagttatgtcatgtctcaaaggtcctgggcttaag
tttccaaagccctatattattgttccatacattcataatgttatacgtgc
tcatagttatcttgtgtttttttctgaaatccacataaatctttgcttag
tcgaaattgttatcaattatttagcctaaagactaaatgaactggggttc
catttatgttccagggcaagcatacacagtatgaaaatcttcaatacact
gttctcggaggaaagaaaatggcgagtttgaactactagtgaattacatt
gctttaaaatgtctaaaattaattggtatttgtgatggatgcaaaagccc
aactctggtgtttaagaggcccagggcattcctcattcgaacggtagaca
tatggtgccactccaaaagatgcactgaagcaagtaagtcactaaatatg
caaatgaatacaagtgaacttgcttggaaaaagcaagtcaggtaaccaaa
gggtagcctggcagtgaaagggtaaggctgagggctgttcacagggagca
taaagatgaggtcaagagaggcccgagaagctgtgggctccttatttgaa
gtgcggtactgaattttttatagctttggctcacgctatgatgatttcag
ataaggattatgggattccctgatattttgaccctggggacttatggaca
ctagatgtatacttttatagagacagtaggcatttcttatgggtgcataa
tccatattttcacaaaagtaagcttgatgagcctgggggatgtagatgga
actctttgaaatttgttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100541656_100542611
seq2: B6Ng01-021E19.b_41_996 (reverse)

seq1  TGATTTATAGGTTGTCTCAGGACAGAT-AACTGCTGTATTAGCAAGAAAC  49
      |||| |||||||||||||||| ||||| |||||| ||| |||| ||||||
seq2  TGATATATAGGTTGTCTCAGG-CAGATAAACTGCGGTA-TAGCCAGAAAC  48

seq1  GTACAACAGCAGTCGTTTAGAAACTAGAACCTGAATCTATCCTGTATGCC  99
      || | |||||||||| ||||||| |||| | |||||||||||||||||||
seq2  GT-CCACAGCAGTCG-TTAGAAA-TAGACCTTGAATCTATCCTGTATGCC  95

seq1  ACAACATATGGAAAGAAAGAACACTGCT-AATCTGCTGTGAAAACTTGAA  148
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  ACAACATATGGAAAGAAAGAACACTGCTAAATTTGCTGTGAAAACTTGAA  145

seq1  AACTAG-AGTTATGGCTACCGAGGACTAGAAGACAATGAGACATTAAGAT  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGTTATGGCTACCGAGGACTAGAAGACAATGAGACATTAAGAT  195

seq1  TTTTTTTAAAAAATTATTTACTGCATATTCCTTTAAGTTTCTC-AAAAAT  246
      ||||||||||||| |  |||||||||||||||||||||||||| ||||||
seq2  TTTTTTTAAAAAAATTATTACTGCATATTCCTTTAAGTTTCTCAAAAAAT  245

seq1  ACAAAATTAGGTATGTCTTTTATAATGTG-AAATGTGAAGTGTATCAATG  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAAAATTAGGTATGTCTTTTATAATGTGAAAATGTGAAGTGTATCAATG  295

seq1  ACTTCAATTAGATAAGTCAAAATAATTTAAATGAATTTTTTTACTCCAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTAGATAAGTCAAAATAATTTAAATGAATTTTTTTACTCCAGT  345

seq1  TACAGGGTCCACCCTCCCCCATTTTTCACTCTAAATCTCTTACAACTGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTCCACCCTCCCCCATTTTTCACTCTAAATCTCTTACAACTGGC  395

seq1  ACAAACCACTTTAGGTTTGTGAACATTAGTGCAAAAAGAAAATAGAATTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACTTTAGGTTTGTGAACATTAGTGCAAAAAGAAAATAGAATTT  445

seq1  TCCCCAAAATGTCAAACACACATAGAAGTCGTGACATGTGAGCTAGGTAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAATGTCAAACACACATAGAAGTCGTGACATGTGAGCTAGGTAC  495

seq1  TGTGGCCCATGCCTCTAAATTCAGCCATTTAGTGGCATGGGTAAGAAAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCCATGCCTCTAAATTCAGCCATTTAGTGGCATGGGTAAGAAAGA  545

seq1  AACAACATCAGGTCCATCCCAGCTCTAAGATCCTGACTCCAAAATAAACG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACATCAGGTCCATCCCAGCTCTAAGATCCTGACTCCAAAATAAACG  595

seq1  TGATCTACACCTGCAGGCTCGGTCAAGAATGCCCTTTATAACCTGATGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTACACCTGCAGGCTCGGTCAAGAATGCCCTTTATAACCTGATGTT  645

seq1  GGAAGGACGACCAGGTTCCCTGAAAAGGGAAGATCCCAGTTGTTGAACAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACGACCAGGTTCCCTGAAAAGGGAAGATCCCAGTTGTTGAACAG  695

seq1  TCCACCATCGTGGGGTGCTCGTGGAGAATAGAAATGCAGGCAGAGACAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATCGTGGGGTGCTCGTGGAGAATAGAAATGCAGGCAGAGACAGG  745

seq1  ACACTAGCATTCGAATTGTAGAAGAAGGTTGCTGTGTATCACTTAAGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCATTCGAATTGTAGAAGAAGGTTGCTGTGTATCACTTAAGTGA  795

seq1  GTTCAAAGCCATCCCGGTGATCATTTCCATGGAGGTGAGATTGAGAAAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGCCATCCCGGTGATCATTTCCATGGAGGTGAGATTGAGAAAGT  845

seq1  GAGCCAGGAGGATGCCACAATTGAGAACGAGCCCAGAACAGATAGCTGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAGGATGCCACAATTGAGAACGAGCCCAGAACAGATAGCTGAG  895

seq1  AAAATGGAGAATGAGGTGCACGAAATGTAGGCTATCTCAGACACTGTAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGAATGAGGTGCACGAAATGTAGGCTATCTCAGACACTGTAAG  945

seq1  GAAATGAATTC  956
      |||||||||||
seq2  GAAATGAATTC  956

seq1: chr14_100440575_100441612
seq2: B6Ng01-021E19.g_67_1087

seq1  GAATTCCTTCCCAAAACTTCATTACATGAGAATAAGATTTTTTAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCAAAACTTCATTACATGAGAATAAGATTTTTTAACACTT  50

seq1  CATCATTAGTCAGATTCAAATAGTTTGTCATTCTCAAAATTCTGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAGTCAGATTCAAATAGTTTGTCATTCTCAAAATTCTGTTTTCT  100

seq1  AATGCAAATGGGCAGGTATAGCAAGGCTCTTTTGTTTCTAATAGTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATGGGCAGGTATAGCAAGGCTCTTTTGTTTCTAATAGTAAGTA  150

seq1  CTCCAATGCTTCTCAAATAACCCCCCCCCCCCGAATCAATTTAGGTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGCTTCTCAAATAACCCCCCCCCCCCGAATCAATTTAGGTAGCA  200

seq1  AATCCTAACTGGCTATAGTTATGTCATGTCTCAAAGGTCCTGGGCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACTGGCTATAGTTATGTCATGTCTCAAAGGTCCTGGGCTTAAG  250

seq1  TTTCCAAAGCCCTATATTATTGTTCCATACATTCATAATGTTATACGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGCCCTATATTATTGTTCCATACATTCATAATGTTATACGTGC  300

seq1  TCATAGTTATCTTGTGTTTTTTTCTGAAATCCACATAAATCTTTGCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTATCTTGTGTTTTTTTCTGAAATCCACATAAATCTTTGCTTAG  350

seq1  TCGAAATTGTTATCAATTATTTAGCCTAAAGACTAAATGAACTGGGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATTGTTATCAATTATTTAGCCTAAAGACTAAATGAACTGGGGTTC  400

seq1  CATTTATGTTCCAGGGCAAGCATACACAGTATGAAAATCTTCAATACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTTCCAGGGCAAGCATACACAGTATGAAAATCTTCAATACACT  450

seq1  GTTCTCGGAGGAAAGAAAATGGCGAGTTTGAACTACTAGTGAATTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGGAGGAAAGAAAATGGCGAGTTTGAACTACTAGTGAATTACATT  500

seq1  GCTTTAAAATGTCTAAAATTAATTGGTATTTGTGATGGATGCAAAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAATGTCTAAAATTAATTGGTATTTGTGATGGATGCAAAAGCCC  550

seq1  AACTCTGGTGTTTAAGAGGCCCAGGGCATTCCTCATTCGAACGGTAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTGTTTAAGAGGCCCAGGGCATTCCTCATTCGAACGGTAGACA  600

seq1  TATGGTGCCACTCCAAAAGATGCACTGAAGCAAGTAAGTCACTAAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGCCACTCCAAAAGATGCACTGAAGCAAGTAAGTCACTAAATATG  650

seq1  CAAATGAATACAAGTGAACTTGCTTGGAAAAAGCAAGTCAGGGAACCAAA  700
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAATGAATACAAGTGAACTTGCTTGGAAAAAGCAAGTCAGGTAACCAAA  700

seq1  GGGTAGCCTGGCAGTGAAAGGGTAAGGCTGAGGGCTGTTCACAGGGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCTGGCAGTGAAAGGGTAAGGCTGAGGGCTGTTCACAGGGAGCA  750

seq1  TAAAGATGAGGTCAAGAGAGGCCCGAGAAGCTGTGGGCTCCTTAGTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TAAAGATGAGGTCAAGAGAGGCCCGAGAAGCTGTGGGCTCCTTA--TTTG  798

seq1  AAGTGCGGTACTGAA-TTTTTATAGCTTTGGCTCACGCTATGATGATTTC  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTGCGGTACTGAATTTTTTATAGCTTTGGCTCACGCTATGATGATTTC  848

seq1  AGATAAGGTATTTATGGAATGCCTGAATATTTGACCTTGGGACTTTATGG  899
      |||||||| |||   ||| | |||||   ||||||| ||||   ||||||
seq2  AGATAAGG-ATTATGGGATTCCCTGATATTTTGACCCTGGGGACTTATGG  897

seq1  ACACTAGATGTATTACTTTTTATAGAGACAGTAGGCAATTCTATATGGGT  949
      |||||||||||| ||| |||||||||||||||||||| |||| |||||||
seq2  ACACTAGATGTA-TAC-TTTTATAGAGACAGTAGGCATTTCT-TATGGGT  944

seq1  GCAATATTCATATTTTCAGCAAAGAAAGAAAGCTTGAGTGAGCCTGGGGG  999
      |||  || |||||||||| ||   |||| |||||||| ||||||||||||
seq2  GCATAATCCATATTTTCA-CA---AAAGTAAGCTTGA-TGAGCCTGGGGG  989

seq1  AAGGGAAGATGGAGACTTCTTTGAAACATTTTGTGGATG  1038
      |   | ||||||| || |||||||||   ||||| ||||
seq2  A--TGTAGATGGA-AC-TCTTTGAAA---TTTGTTGATG  1021