BAC Information

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BAC

Clone NameB6Ng01-021J13
Chromosome14 (Build37)2 (Build37)
Map Location 75,465,024 - 75,465,926127,003,676 - 127,003,957
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
Downstream gene4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J13.bB6Ng01-021J13.g
ACCDH854056DH854057
length919890
definitionDH854056|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J13, 5' end.DH854057|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,465,024 - 75,465,926)(127,003,676 - 127,003,957)
sequence
gaattcaattggagtggcttgtacctcatgacatttctgaggcgctaaag
atgaggaatagcagtaagtctttggtgctaatcaaactttagaacagcga
atgggatgtctggaggatggggaggaagctcctagaacaaagtgtttcac
accttggagcttcatctggattttacattaagacagaaagtcgggggcgg
ggcgagacagttttgacacatattttgaaactggtcacttgcttgaggaa
gctgtgaggaacattaccctatttatgaacatgtgagaaaaaagtcactt
tgcaaacactgaccttacacatagtttctgaatgtatctatcttatttac
aaagattgggaaccttgatctaaggagtcacaataaaagctaaaccagag
ccattggaaacactgcagctctcaccggaacaaatggaaggtttcataac
ccagagctcccgagactgctctggaaaaaataatgtctaccataaataat
ttcaactaaaaaataaaatcactagtccaaagaggaagtcatcccacagg
aaggagtcaacaagcaagattagctgacagagaatgtgaccaacaagaca
gctgaagctacaaaatgagcacatttatagtaactaattttaatgggatt
ataaaccacaacaaaagaataaatactacaaaaaaatcagagtcaacctg
agtctgtcagaatcaaaagggccactatagaaactgatttatgaaataaa
tatggtattagaaacacatggaaaacaggaagataaacatgcagaactct
gtagagtgttggacacaagacaaagagatgaagagggaggggaaatggag
aaccagagaagctacagatgactttgagggactctaggacatccagagaa
ctggagaatcaatggctga
gaattctgctctggagatggtcttatatggaaatatgagttcatcaaaat
ctaggacttttcaaagactgaaacattccatcctttcagggaagtcctta
aaacagaaaaaaaaaaatctcaaaatagtttcaggaagtccctgaaactg
accagatctacccaccaccaccctgcctccaagaataaacagtaaagcct
gctgagagtcatcatcaggggaacaaagctgaaaaggaaactgggagcta
atccagctgtctggaagaagcagaggctggctgagctgcctgaagaggtt
tagacctactgagtcacttggaaggcatacgctccaatctgttgagctac
ctgtaggctgtgcagtttgcttcagattcctagctttgtgagctgtcacc
catgctgcgtttggctttggtgactcagctgtctttgagtcctttctgct
ccttacccattgtactggctggtttggggtgtcaacttgacacaggctgg
agtcatcacagagaaagaagcttcagttggggagatgcctccacgagatc
cagctgtaaggcattttctcaattagtgatcaagggggaaaggcctcttg
tgggtgggaccatctctgggctggtagtcttgggttctataagagagcaa
gctgagcaagccaggagaagcaagccagtaaaaacatccctccatggcct
ctacatcagctcctgctccctgacctgcttgagttccagtcctgacttct
ttcactaatgaacagcaatgtggaaatttgtaagctgaataaatcctttt
cctccccaacttgcttcttggtcatgatgtttgtgcagtaatagaaaccc
tgactagacacccatattcctgtaatagccccagaaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75465024_75465926
seq2: B6Ng01-021J13.b_43_943

seq1  GAATTCAATTGGAGTGGCTTGTACCTCATGACATTTCTGAGGCGCTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGGAGTGGCTTGTACCTCATGACATTTCTGAGGCGCTAAAG  50

seq1  ATGAGGAATAGCAGTAAGTCTTTGGTGCTAATCAAACTTTAGAACAGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAATAGCAGTAAGTCTTTGGTGCTAATCAAACTTTAGAACAGCGA  100

seq1  ATGGGATGTCTGGAGGATGGGGAGGAAGCTCCTAGAACAAAGTGTTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGTCTGGAGGATGGGGAGGAAGCTCCTAGAACAAAGTGTTTCAC  150

seq1  ACCTTGGAGCTTCATCTGGATTTTACATTAAGACAGAAAGTCGGGGGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGAGCTTCATCTGGATTTTACATTAAGACAGAAAGTCGGGGGCGG  200

seq1  GGCGAGACAGTTTTGACACATATTTTGAAACTGGTCACTTGCTTGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGACAGTTTTGACACATATTTTGAAACTGGTCACTTGCTTGAGGAA  250

seq1  GCTGTGAGGAACATTACCCTATTTATGAACATGTGAGAAAAAAGTCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGGAACATTACCCTATTTATGAACATGTGAGAAAAAAGTCACTT  300

seq1  TGCAAACACTGACCTTACACATAGTTTCTGAATGTATCTATCTTATTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACTGACCTTACACATAGTTTCTGAATGTATCTATCTTATTTAC  350

seq1  AAAGATTGGGAACCTTGATCTAAGGAGTCACAATAAAAGCTAAACCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGGGAACCTTGATCTAAGGAGTCACAATAAAAGCTAAACCAGAG  400

seq1  CCATTGGAAACACTGCAGCTCTCACCGGAACAAATGGAAGGTTTCATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAAACACTGCAGCTCTCACCGGAACAAATGGAAGGTTTCATAAC  450

seq1  CCAGAGCTCCCGAGACTGCTCTGGAAAAAATAATGTCTACCATAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTCCCGAGACTGCTCTGGAAAAAATAATGTCTACCATAAATAAT  500

seq1  TTCAACTAAAAAATAAAATCACTAGTCCAAAGAGGAAGTCATCCCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTAAAAAATAAAATCACTAGTCCAAAGAGGAAGTCATCCCACAGG  550

seq1  AAGGAGTCAACAAGCAAGATTAGCTGACAGAGAATGTGACCAACAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCAACAAGCAAGATTAGCTGACAGAGAATGTGACCAACAAGACA  600

seq1  GCTGAAGCTACAAAATGAGCACATTTATAGTAACTAA-TTTAATGGGATT  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGAAGCTACAAAATGAGCACATTTATAGTAACTAATTTTAATGGGATT  650

seq1  ATAAACCACAACAAAAGAATAAATACTACAAAAAAATCAGAGTCAACCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCACAACAAAAGAATAAATACTACAAAAAAATCAGAGTCAACCTG  700

seq1  AGTCTGTCAGAATCAAAAGGGCCACTATAGAAACTGATTTATGAAATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCAGAATCAAAAGGGCCACTATAGAAACTGATTTATGAAATAAA  750

seq1  TATGGTATTAGAAACACATGGAAAACAGGAAGATAAACATGGCAGAACTC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATGGTATTAGAAACACATGGAAAACAGGAAGATAAACAT-GCAGAACTC  799

seq1  TGTAGAGTGTTGGACACCAGGACAAAGAGATGAAGAGGGAGGGGAAATGG  849
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  TGTAGAGTGTTGGACA-CAAGACAAAGAGATGAAGAGGGAGGGGAAATGG  848

seq1  AGAACCAGAGAAGCAACAGATGACGTCAGAGGGACTCTAGGACATCCAGA  899
      |||||||||||||| ||||||||| |  ||||||||||||||||||||||
seq2  AGAACCAGAGAAGCTACAGATGAC-TTTGAGGGACTCTAGGACATCCAGA  897

seq1  GAAC  903
      ||||
seq2  GAAC  901

seq1: chr2_127003676_127003957
seq2: B6Ng01-021J13.g_529_809 (reverse)

seq1  GACTGGAACTCAAGCAGGTAAGAAAGCAGAAGCTGATGCAGAGGCCATGG  50
      ||||||||||||||||||| ||  ||||| |||||||| |||||||||||
seq2  GACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCTGATGTAGAGGCCATGG  50

seq1  AGGGATGTTCTTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCCTGTTCTC  100
      ||||||||| |||||||||||||||||||||||||||||||| || ||||
seq2  AGGGATGTT-TTTACTGGCTTGCTTCTCCTGGCTTGCTCAGCTTGCTCTC  99

seq1  TTATAGAACCCAAGATTACCAGCCCAGAGCTGGTCCCACCTACAAGGGGC  150
      ||||||||||||||| ||||||||||||| |||||||||| ||||| |||
seq2  TTATAGAACCCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGAGGC  149

seq1  CTTTCCCCCTTGATCACTAATTGAGGAAATGCCTTACAGGTGGATCTTGT  200
      ||||||||||||||||||||||||| ||||||||||||| ||||||| ||
seq2  CTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCGT  199

seq1  GGAGGCATCTCCCCAACTGAAGCTCCTTTCTCTATGATAACTCCAGCCTG  250
      |||||||||||||||||||||||| |||||||| |||| |||||||||||
seq2  GGAGGCATCTCCCCAACTGAAGCTTCTTTCTCTGTGATGACTCCAGCCTG  249

seq1  TGTCAAGTTGACACCCAAAACCAGCCAGTACA  282
      |||||||||||||||| |||||||||||||||
seq2  TGTCAAGTTGACACCCCAAACCAGCCAGTACA  281