BAC Information

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BAC

Clone NameB6Ng01-022D18
Chromosome14 (Build37)
Map Location 27,814,985 - 27,926,853
singlet/doubletdoublet
Overlap geneHesx1, Il17rd
Upstream geneLOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022D18.bB6Ng01-022D18.g
ACCDH854509DH854510
length1,0321,033
definitionDH854509|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D18, 5' end.DH854510|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,925,813 - 27,926,853)(27,814,985 - 27,816,025)
sequence
gaattcaattcccagcaaccacatgatggctcacaagcatctgtacagct
acagtgtatccatcacatacataaaataaataaatcttaaaaaaaataga
cacaagatcagtgctcggagagttcctagtgatccttgcctgagcactaa
ctgccacccccacaggaaaagatgacagggcgagctcctggagtaggagc
caccttgcctgctagcattcctggggcccggatctttctgtccaggtcct
ctggccagaaagaagtgttcagaattgtctcccacccagatggactttcc
ttaaaaaaaacaaaacaaaaaaacctttgctgctgcaagctcttgtcatg
gtctcccagcactgggtgatctctcattggcctgcagctcatctttggga
ctaaacacaaagcatcttcattccactctggcttcaagaagtctctgtga
ccagagacccagtgatgttcaggaaacacacaccctcgacagtattgcca
ggggaaatgtccacatccaaaccccaggcctcaacctttccctcccactt
cgagtggtgggaaatccccaccacagttcaagcagtattaagtaggggct
agagagatggctcagcgactcttgcaactgggctttggtacacacacaca
cacacacacacacaccgttctgtggattatagacacctgtatgaaactca
agtttctaggaaaagagctctgatgtcctctttggatctcaattacttgc
atgcaagtgactcgcatacagacacacactcataaataaaaagttttttt
taattaaaagaattaactaagggcttctactttattgaaggcccagcaga
ttccagctcaccggtccatacccgacagtcttccccatacagccctgtct
aattgtctccctttgtgtcaatttagcactaagagttggaagtcagctca
gctaaatctgtctcaaataaaaaaaaagattattattttttatttttatc
tttttaaaagatcaatttattatatatgaaag
gaattccttcattattctaggtcgaagtattggaaaatgtctttagagtg
aactgctaccctggcattgacatcagagaggacctagctcaaaagctgaa
cttagaggaagacagaatccaggtagggtgcaaacacagttgttacccgt
gatgataaataatgtggtaatatgtctgagaactgttttattttcccttg
attctagatttggttccaaaatcgccgagcaaagatgaaaaggtcccgta
gagaatcacagtttctaatggcgaaaaaacccttcaacccagatcttctg
aaataggtagaaaattacacatgttggcttctcttccagttgtatagtac
agaagaaatcaatggaaattccaagtacttaaaatgttacagttctctcc
tgtatctaatctagattttgtcattctttctgaaaatactgcaaataatt
atggttctagaacagtacatttttagttataattaaaacatctttcctat
atatttttaataaaaaaattttcagaaatgaccggtattttaatatactt
tcttctttgaaaccttcacaggtgtatacagtctgttttagtcatattta
tccgttcctcccctaacacttcccagactcaccccattctccctcctaac
ctcaacaatagttgtttacaagtgagtaaagttgatctagtaagttacta
tgtgtattaaaagctctaagctcagctgtggtggtgtgcacgcctttaat
cccagcacttgggtggcagagacaggcagatttctgagttcgagggcagc
ctggtctacagagtgagttccaggacagccagggctacacagagaaaccc
tgtctcgggaaaaaaaaaaaaaaaaagaatcactaagttcataactgatt
ccacaggttggttacacttacaagtattttcaaaatatagtagtagtagt
agtattataatagggttaatttatttcatagttttttccaggttcttttg
aaatggattatacacgcatatattatacaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27925813_27926853
seq2: B6Ng01-022D18.b_45_1076 (reverse)

seq1  CTTTCATATAATAATAAATAAATCTTTTAAAAAAATAAAAATAAAAAAAT  50
      ||||||||| |||||||||  |||||||||||| |||||||| |||||||
seq2  CTTTCATAT-ATAATAAATTGATCTTTTAAAAAGATAAAAAT-AAAAAAT  48

seq1  AAATAAATCTTTTTTTTTTTTTTGAGACAGATCTAGCTGAGCCTGACTTC  100
      ||   |||| ||||||||| |||||||||||| |||||||| ||||||||
seq2  AA--TAATC-TTTTTTTTTATTTGAGACAGATTTAGCTGAG-CTGACTTC  94

seq1  CAACTCTTTAAGTGCTAAATTGAACACAAAGGGAAGACAATTTTGACAGG  150
      ||||||||  |||||||||||| |||||||||| |||||| || ||||||
seq2  CAACTCTT--AGTGCTAAATTG-ACACAAAGGG-AGACAA-TTAGACAGG  139

seq1  GCTGTATGGGG-AGACTGTCGGGTATGGAACGGTGAGCTGGAAATCTGCT  199
      ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
seq2  GCTGTATGGGGAAGACTGTCGGGTATGGACCGGTGAGCTGG-AATCTGCT  188

seq1  GGGCCTTCAAT-AAGTAGAAGCCCCTTAGTTAATTCTTTTAATTAAAAAA  248
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GGGCCTTCAATAAAGTAGAAG-CCCTTAGTTAATTCTTTTAATTAAAAAA  237

seq1  AACTTTTTATTTATGAGTGTGTGTCTGTATGCGAGTCACTTGCATGCAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTATTTATGAGTGTGTGTCTGTATGCGAGTCACTTGCATGCAAG  287

seq1  TAATTGAGATCCAAAGAGGACATCAGAGCTCTTTTCCTAG-AACTTGAGT  347
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATTGAGATCCAAAGAGGACATCAGAGCTCTTTTCCTAGAAACTTGAGT  337

seq1  TTCATACAGGTGTCTATAATCCACAG-ACGGTGTGTGTGTGTGTGTGTGT  396
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCATACAGGTGTCTATAATCCACAGAACGGTGTGTGTGTGTGTGTGTGT  387

seq1  GTGTGTACCAAAGCCCAGTTGCAAGAGTCGCTGAGCCATCTCTCTAGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACCAAAGCCCAGTTGCAAGAGTCGCTGAGCCATCTCTCTAGCCC  437

seq1  CTACTTAATACTGCTTGAACTGTGGTGGGGATTTCCCACCACTCGAAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAATACTGCTTGAACTGTGGTGGGGATTTCCCACCACTCGAAGTG  487

seq1  GGAGGGAAAGGTTGAGGCCTGGGGTTTGGATGTGGACATTTCCCCTGGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAAGGTTGAGGCCTGGGGTTTGGATGTGGACATTTCCCCTGGCA  537

seq1  ATACTGTCGAGGGTGTGTGTTTCCTGAACATCACTGGGTCTCTGGTCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCGAGGGTGTGTGTTTCCTGAACATCACTGGGTCTCTGGTCACA  587

seq1  GAGACTTCTTGAAGCCAGAGTGGAATGAAGATGCTTTGTGTTTAGTCCCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTCTTGAAGCCAGAGTGGAATGAAGATGCTTTGTGTTTAGTCCCA  637

seq1  AAGATGAGCTGCAGGCCAATGAGAGATCACCCAGTGCTGGGAGACCATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGCTGCAGGCCAATGAGAGATCACCCAGTGCTGGGAGACCATGA  687

seq1  CAAGAGCTTGCAGCAGCAAAGGTTTTTTTGTTTTGTTTTTTTTAAGGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTTGCAGCAGCAAAGGTTTTTTTGTTTTGTTTTTTTTAAGGAAA  737

seq1  GTCCATCTGGGTGGGAGACAATTCTGAACACTTCTTTCTGGCCAGAGGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTGGGTGGGAGACAATTCTGAACACTTCTTTCTGGCCAGAGGAC  787

seq1  CTGGACAGAAAGATCCGGGCCCCAGGAATGCTAGCAGGCAAGGTGGCTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGAAAGATCCGGGCCCCAGGAATGCTAGCAGGCAAGGTGGCTCC  837

seq1  TACTCCAGGAGCTCGCCCTGTCATCTTTTCCTGTGGGGGTGGCAGTTAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAGGAGCTCGCCCTGTCATCTTTTCCTGTGGGGGTGGCAGTTAGT  887

seq1  GCTCAGGCAAGGATCACTAGGAACTCTCCGAGCACTGATCTTGTGTCTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCAAGGATCACTAGGAACTCTCCGAGCACTGATCTTGTGTCTAT  937

seq1  TTTTTTTAAGATTTATTTATTTTATGTATGTGATGGATACACTGTAGCTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAGATTTATTTATTTTATGTATGTGATGGATACACTGTAGCTG  987

seq1  TACAGATGCTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGCTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTC  1032

seq1: chr14_27814985_27816025
seq2: B6Ng01-022D18.g_70_1102

seq1  GAATTCCTTCATTATTCTAGGTCGAAGTATTGGAAAATGTCTTTAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATTATTCTAGGTCGAAGTATTGGAAAATGTCTTTAGAGTG  50

seq1  AACTGCTACCCTGGCATTGACATCAGAGAGGACCTAGCTCAAAAGCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTACCCTGGCATTGACATCAGAGAGGACCTAGCTCAAAAGCTGAA  100

seq1  CTTAGAGGAAGACAGAATCCAGGTAGGGTGCAAACACAGTTGTTACCCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGAAGACAGAATCCAGGTAGGGTGCAAACACAGTTGTTACCCGT  150

seq1  GATGATAAATAATGTGGTAATATGTCTGAGAACTGTTTTATTTTCCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAAATAATGTGGTAATATGTCTGAGAACTGTTTTATTTTCCCTTG  200

seq1  ATTCTAGATTTGGTTCCAAAATCGCCGAGCAAAGATGAAAAGGTCCCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATTTGGTTCCAAAATCGCCGAGCAAAGATGAAAAGGTCCCGTA  250

seq1  GAGAATCACAGTTTCTAATGGCGAAAAAACCCTTCAACCCAGATCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCACAGTTTCTAATGGCGAAAAAACCCTTCAACCCAGATCTTCTG  300

seq1  AAATAGGTAGAAAATTACACATGTTGGCTTCTCTTCCAGTTGTATAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGTAGAAAATTACACATGTTGGCTTCTCTTCCAGTTGTATAGTAC  350

seq1  AGAAGAAATCAATGGAAATTCCAAGTACTTAAAATGTTACAGTTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATCAATGGAAATTCCAAGTACTTAAAATGTTACAGTTCTCTCC  400

seq1  TGTATCTAATCTAGATTTTGTCATTCTTTCTGAAAATACTGCAAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAATCTAGATTTTGTCATTCTTTCTGAAAATACTGCAAATAATT  450

seq1  ATGGTTCTAGAACAGTACATTTTTAGTTATAATTAAAACATCTTTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTAGAACAGTACATTTTTAGTTATAATTAAAACATCTTTCCTAT  500

seq1  ATATTTTTAATAAAAAAATTTTCAGAAATGACCGGTATTTTAATATACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAATAAAAAAATTTTCAGAAATGACCGGTATTTTAATATACTT  550

seq1  TCTTCTTTGAAACCTTCACAGGTGTATACAGTCTGTTTTAGTCATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGAAACCTTCACAGGTGTATACAGTCTGTTTTAGTCATATTTA  600

seq1  TCCGTTCCTCCCCTAACACTTCCCAGACTCACCCCATTCTCCCTCCTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCCTCCCCTAACACTTCCCAGACTCACCCCATTCTCCCTCCTAAC  650

seq1  CTCAACAATAGTTGTTTACAAGTGAGTAAAGTTGATCTAGTAAGTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAATAGTTGTTTACAAGTGAGTAAAGTTGATCTAGTAAGTTACTA  700

seq1  TGTGTATTAAAAGCTCTAAGCTCAGCTGTGGTGGTGTGCACGCCTTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTAAAAGCTCTAAGCTCAGCTGTGGTGGTGTGCACGCCTTTAAT  750

seq1  CCCAGCACTTGGGTGGCAGAGACAGGCAGATTTCTGAGTTCGAGGCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCAGCACTTGGGTGGCAGAGACAGGCAGATTTCTGAGTTCGAGGGCAGC  800

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  850

seq1  TGTCTCGGGAAAAAAAAAAAAAAAAAGAAATCACTAAGTTCATAACTGAT  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCTCGGGAAAAAAAAAAAAAAAAAG-AATCACTAAGTTCATAACTGAT  899

seq1  TCCACAGGTTGGTTACAACTTACAAAGTA-TTTCAAAATATAGTAGTAGT  949
      |||||||||||||||| |||||| ||||| ||||||||||||||||||||
seq2  TCCACAGGTTGGTTAC-ACTTAC-AAGTATTTTCAAAATATAGTAGTAGT  947

seq1  AGTAGTAATAATAATAGGTTTAATTTATTTCCATTAGTTTTTTTCCAGGT  999
      |||||| || |||||||| ||||||||||||   ||| ||||||||||||
seq2  AGTAGT-ATTATAATAGGGTTAATTTATTTC--ATAG-TTTTTTCCAGGT  993

seq1  TCCTTTTGAAATGCAATTATACACGCATATATTATACAATGA  1041
      | |||||||||||  |||||||||||||||||||||||| ||
seq2  T-CTTTTGAAATG-GATTATACACGCATATATTATACAAGGA  1033