BAC Information

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BAC

Clone NameB6Ng01-023O07
Chromosome14 (Build37)5 (Build37)
Map Location 42,587,055 - 42,587,91118,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849
Downstream gene1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023O07.bB6Ng01-023O07.g
ACCDH855687DH855688
length855789
definitionDH855687|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O07, 5' end.DH855688|Mus musculus domesticus DNA, BAC clone: B6Ng01-023O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,587,055 - 42,587,911)(18,084,511 - 18,084,575)
sequence
gaattcacatgctcctgtaatagtcatgcccaccaaattaatgagagtca
caactatattgctcttaggagatgcattttcatttggggctcataagaaa
ttaggaaacccagagctatctgcttctcatttcctggaaatacagcattg
gtgataactgtaaagcagaaatattgacttcccagaaaaaaagacttccc
aaatacccatgttgagatttcccagacatgttgagacatggctttctttt
taggtaattttattgtggctacacacttggaacctttttgagttttgttt
atttgggtgaatttagagcgttgctatttatttcttttgtttatacgtat
tttttgcctgctagatgtctttgcaccaaatgcatgcaattcctccatag
gccacaagaaggcatggtattcaacccagagatgcattaatgtgatagtt
agctaccctcggggccctctggtggatagacaaatgctcttaatagaaga
gcattctttcctgtccctaccctacatttcttctttgtccttccagattg
tgtggtttttaattgaacaagatcatccacaatcaaagatagaagtttct
ggagacctataggttcaggtgcttgaagatggaatggtaatttttcgtag
gttacctggcacccatgcagagctcttgtgggttcaagataataccataa
cttatcgtcaaggttggagcagatctgtcacctctcgtctaggataacca
tgtatattattcgtgatatgcctaattgatgaacagcaaattgagaagtt
cctctggggtgtagagggataggaaggattactattttaggcctgctacc
agtgt
gaattctcacctgaggaataccaaatggcagagaagcacctgacaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaca
gcagatgctggcgtggatgtggagaaagaggaacactcctccattgttgg
tgggagtgcaggcttgtacaacaactctggaaatcagtctggtggttcct
cagaaaattggacatagtactaccggaggatccagcaatacctctcctcg
gcatttatccagaagatgccccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacctag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
aagaaactcacacaatatgtactcactgataagtggatattagccccaaa
cctaggatatccaagatataagatataatttgctaaacacatgaaactca
agaagaatgaagactgaagtgtggacactatgcccctccttagatttggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgagat
gaaaggatggaccatgtagagactgccatatccagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42587055_42587911
seq2: B6Ng01-023O07.b_35_889 (reverse)

seq1  ACACTGGTTAGCTGGCCTTAAATAGTTATTCCTTCCTCTACCTCTACACC  50
      ||||||| |||| ||||| |||||| || |||||||| | ||||||||||
seq2  ACACTGG-TAGCAGGCCTAAAATAG-TAATCCTTCCTATCCCTCTACACC  48

seq1  CAGGAGGAACTTCTCAATTCTGCTGTTCATCAATTAGGCATTTCACGACT  100
      |  |||||||||||||||| ||||||||||||||||||||| |||||| |
seq2  CCAGAGGAACTTCTCAATT-TGCTGTTCATCAATTAGGCATATCACGAAT  97

seq1  AATCTGCATGGTTATCCTAGACGAGAGGTGACAGATCTGCTCCAACCTTG  150
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATGGTTATCCTAGACGAGAGGTGACAGATCTGCTCCAACCTTG  147

seq1  ACGATAAGTTATGGTATTATCTTGAACCCACAAGAGCTCTGCATGGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATAAGTTATGGTATTATCTTGAACCCACAAGAGCTCTGCATGGGTGC  197

seq1  CAGGTAACCTACG-AAAATTACCATTCCATCTTCAAGCACCTGAACCTAT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGGTAACCTACGAAAAATTACCATTCCATCTTCAAGCACCTGAACCTAT  247

seq1  AGGTCTCCAGAAACTTCTATCTTTGATTGTGGATGATCTTGTTCAATTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCAGAAACTTCTATCTTTGATTGTGGATGATCTTGTTCAATTAA  297

seq1  AAACCACACAATCTGGAAGGACAAAGAAGAAATGTAGGGTAGGGACAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACAATCTGGAAGGACAAAGAAGAAATGTAGGGTAGGGACAGGA  347

seq1  AAGAATGCTCTTCTATTAAGAGCATTTGTCTATCCACCAGAGGGCCCCGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCTCTTCTATTAAGAGCATTTGTCTATCCACCAGAGGGCCCCGA  397

seq1  GGGTAGCTAACTATCACATTAATGCATCTCTGGGTTGAATACCATGCCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTAACTATCACATTAATGCATCTCTGGGTTGAATACCATGCCTT  447

seq1  CTTGTGGCCTATGGAGGAATTGCATGCATTTGGTGCAAAGACATCTAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCCTATGGAGGAATTGCATGCATTTGGTGCAAAGACATCTAGCA  497

seq1  GGCAAAAAATACGTATAAACAAAAGAAATAAATAGCAACGCTCTAAATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAAATACGTATAAACAAAAGAAATAAATAGCAACGCTCTAAATTC  547

seq1  ACCCAAATAAACAAAACTCAAAAAGGTTCCAAGTGTGTAGCCACAATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATAAACAAAACTCAAAAAGGTTCCAAGTGTGTAGCCACAATAAA  597

seq1  ATTACCTAAAAAGAAAGCCATGTCTCAACATGTCTGGGAAATCTCAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTAAAAAGAAAGCCATGTCTCAACATGTCTGGGAAATCTCAACAT  647

seq1  GGGTATTTGGGAAGTCTTTTTTTCTGGGAAGTCAATATTTCTGCTTTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTGGGAAGTCTTTTTTTCTGGGAAGTCAATATTTCTGCTTTACA  697

seq1  GTTATCACCAATGCTGTATTTCCAGGAAATGAGAAGCAGATAGCTCTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACCAATGCTGTATTTCCAGGAAATGAGAAGCAGATAGCTCTGGG  747

seq1  TTTCCTAATTTCTTATGAGCCCCAAATGAAAATGCATCTCCTAAGAGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAATTTCTTATGAGCCCCAAATGAAAATGCATCTCCTAAGAGCAA  797

seq1  TATAGTTGTGACTCTCATTAATTTGGTGGGCATGACTATTACAGGAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGTGACTCTCATTAATTTGGTGGGCATGACTATTACAGGAGCAT  847

seq1  GTGAATTC  857
      ||||||||
seq2  GTGAATTC  855

seq1: chr5_18084511_18084575
seq2: B6Ng01-023O07.g_388_452 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||||||||||
seq2  CTTCTTACCAGTTGG  65