BAC Information

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BAC

Clone NameB6Ng01-025B18
Chromosome14 (Build37)
Map Location 78,861,590 - 79,031,236
singlet/doubletdoublet
Overlap geneLOC219180, Akap11, Dgkh
Upstream geneD230005D02Rik, EG629678, Gm1587, Dnajc15, Epsti1, AU021034, Tnfsf11
Downstream geneLOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025B18.bB6Ng01-025B18.g
ACCDH856551DH856552
length2171,035
definitionDH856551|Mus musculus domesticus DNA, BAC clone: B6Ng01-025B18, 5' end.DH856552|Mus musculus domesticus DNA, BAC clone: B6Ng01-025B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,031,014 - 79,031,236)(78,861,590 - 78,862,638)
sequence
aattggcctacaatctcttgatagtgtttgattgtgtgtctggttttggt
tttgtttttgtttttttttagcttgagtaccatggtgttacagtctcata
ggattttatacttaatgctttatcagaccaattcattcatattctctctc
tctttctctctttctttctctctctctctctctctctctctctctctctc
tctctctctctctctct
gaattcactgatcatcttgtgaaaacccacaacagagcctgttcagagga
cccagctgtgactaccacataaggcagaaataaagtgaactaagtctgtg
aaaaaaaaaaaaaagtagcatttctggatgtcagggataagatgctggaa
agatctctgagagcaatgtaaaaccattgtcccagagaagaggaacacat
tcgtgttttttgaaagattgtcctgttagtgatttaaaacataacaagga
aagaggacagtttgaccagggagaactaaactaggccgttgggagcagct
gtgccctccccccagccctgagcagactaatcagaccttaattgattgac
acagaaggtcttcctcccacctgggtggagtcttcgaaccctgcccgctg
ctgctgagcttggttgcaacaaaacccagccaaagcaaaggataggtctt
tgggtttcccctatataaacgcagagctgaaaattaaactttgagccttg
atcagagaaactttgtcttgacttcactcttctctcgcccacctcttttt
tcattcctagcctctctttctagtgtactcagttctccatggctgctgga
cagctacaagcagccatcttagccagccctggctgtggcttgtgctgtga
aatggaaatcagaggaggtagatgtaagaactgattagctacagtgttgg
caacagctgcaaatgagttgcatctggaggagagaggagagagcagagag
gacagaggacagaggacaatacaaaggaggactcagagccctgtggttta
tacaaccaatgggaccttcagggaaatgtaaagatgccaggatggaacac
tgagaaaggggtgggctgcacaggtttgcttttacctaaataactagcac
ctggggacatttattagaggtggcatggaggtcaaagtggtgggttgggg
atcatcagagtggagactgtcacaaagtgtgcatgtgttgtgcatcaatg
aggagggatgcagcttagaacaccctagctatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79031014_79031236
seq2: B6Ng01-025B18.b_43_265 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AAAGAAAGAGAGAAAGAGAGAGAGAATATGAATGAATTGGTCTGATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAGAGAAAGAGAGAGAGAATATGAATGAATTGGTCTGATAAAG  100

seq1  CATTAAGTATAAAATCCTATGAGACTGTAACACCATGGTACTCAAGCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTATAAAATCCTATGAGACTGTAACACCATGGTACTCAAGCTAA  150

seq1  AAAAAAACAAAAACAAAACCAAAACCAGACACACAATCAAACACTATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAAACAAAACCAAAACCAGACACACAATCAAACACTATCAA  200

seq1  GAGATTGTAGGCCAATTGAATTC  223
      |||||||||||||||||||||||
seq2  GAGATTGTAGGCCAATTGAATTC  223

seq1: chr14_78861590_78862638
seq2: B6Ng01-025B18.g_68_1102

seq1  GAATTCACTGATCATCTTGTGAAAACCCACAACAGAGCCTGTTCAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATCATCTTGTGAAAACCCACAACAGAGCCTGTTCAGAGGA  50

seq1  CCCAGCTGTGACTACCACATAAGGCAGAAATAAAGTGAACTAAGTCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTGACTACCACATAAGGCAGAAATAAAGTGAACTAAGTCTGTG  100

seq1  AAAAAAAAAAAAAAGTAGCATTTCTGGATGTCAGGGATAAGATGCTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGTAGCATTTCTGGATGTCAGGGATAAGATGCTGGAA  150

seq1  AGATCTCTGAGAGCAATGTAAAACCATTGTCCCAGAGAAGAGGAACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCTGAGAGCAATGTAAAACCATTGTCCCAGAGAAGAGGAACACAT  200

seq1  TCGTGTTTTTTGAAAGATTGTCCTGTTAGTGATTTAAAACATAACAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTTTTTGAAAGATTGTCCTGTTAGTGATTTAAAACATAACAAGGA  250

seq1  AAGAGGACAGTTTGACCAGGGAGAACTAAACTAGGCCGTTGGGAGCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACAGTTTGACCAGGGAGAACTAAACTAGGCCGTTGGGAGCAGCT  300

seq1  GTGCCCTCCCCCCAGCCCTGAGCAGACTAATCAGACCTTAATTGATTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCCCCCCAGCCCTGAGCAGACTAATCAGACCTTAATTGATTGAC  350

seq1  ACAGAAGGTCTTCCTCCCACCTGGGTGGAGTCTTCGAACCCTGCCCGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGTCTTCCTCCCACCTGGGTGGAGTCTTCGAACCCTGCCCGCTG  400

seq1  CTGCTGAGCTTGGTTGCAACAAAACCCAGCCAAAGCAAAGGATAGGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCTTGGTTGCAACAAAACCCAGCCAAAGCAAAGGATAGGTCTT  450

seq1  TGGGTTTCCCCTATATAAACGCAGAGCTGAAAATTAAACTTTGAGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCCCCTATATAAACGCAGAGCTGAAAATTAAACTTTGAGCCTTG  500

seq1  ATCAGAGAAACTTTGTCTTGACTTCACTCTTCTCTCGCCCACCTCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAAACTTTGTCTTGACTTCACTCTTCTCTCGCCCACCTCTTTTT  550

seq1  TCATTCCTAGCCTCTCTTTCTAGTGTACTCAGTTCTCCATGGCTGCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTAGCCTCTCTTTCTAGTGTACTCAGTTCTCCATGGCTGCTGGA  600

seq1  CAGCTACAAGCAGCCATCTTAGCCAGCCCTGGCTGTGGCTTGTGCTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACAAGCAGCCATCTTAGCCAGCCCTGGCTGTGGCTTGTGCTGTGA  650

seq1  AATGGAAATCAGAGGAGGTAGATGTAAGAACTGATTAGCTACAGTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATCAGAGGAGGTAGATGTAAGAACTGATTAGCTACAGTGTTGG  700

seq1  CAACAGCTGCAAATGAGTTGCATCTGGAGGAGAGAGGAGAGAGCAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTGCAAATGAGTTGCATCTGGAGGAGAGAGGAGAGAGCAGAGAG  750

seq1  GACAGAGGACAGAGGACAATACAAAGGAGGACTCAGAGCCCTGTGGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGACAGAGGACAATACAAAGGAGGACTCAGAGCCCTGTGGTTTA  800

seq1  TACAACCAATGGGACCTTCAGGGAATTGTAAAGATGCCAGGATGGAACAC  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAACCAATGGGACCTTCAGGGAAATGTAAAGATGCCAGGATGGAACAC  850

seq1  TGAGAAAGGGGTGGGCTGCACAGGTTTGCTTTTACCTAAATAACTAGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGAGAAAGGGGTGGGCTGCACAGGTTTGCTTTTACCTAAATAACTAGCA-  899

seq1  CCTGGGGACATTTAATTAGAGGTGGCATGGAGGTCAAAGGTGTGGGTTTG  950
      ||||||||||||| |||||||||||||||||||||||||  ||||| |||
seq2  CCTGGGGACATTT-ATTAGAGGTGGCATGGAGGTCAAAGTGGTGGG-TTG  947

seq1  GGGATCATCAGAGTGGAGACTGTCACCAAAGTGTGCAGGTGGTGGTGCAT  1000
      ||||||||||||||||||||||||| ||||||||||| || || ||||||
seq2  GGGATCATCAGAGTGGAGACTGTCA-CAAAGTGTGCATGT-GTTGTGCAT  995

seq1  CAAAAGGAAGGAGG-GGGATGCAGCTTTAAGAAACACCCAAGCTAATGAC  1049
      |      || |||| ||||||||||||  || ||||||| |||| |||||
seq2  C------AATGAGGAGGGATGCAGCTT--AG-AACACCCTAGCT-ATGAC  1035