BAC Information

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BAC

Clone NameB6Ng01-025C04
Chromosome14 (Build37)
Map Location 4,096,236 - 4,189,191
singlet/doubletdoublet
Overlap geneLOC100041019, ENSMUSG00000068790, LOC100041054
Upstream geneLOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755, LOC100040767, LOC100040779, LOC100038846, EG666890, LOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012
Downstream geneLOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C04.bB6Ng01-025C04.g
ACCDH856571DH856572
length9801,181
definitionDH856571|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C04, 5' end.DH856572|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,188,209 - 4,189,191)(4,096,236 - 4,097,421)
sequence
gaattcagtgttcatcctgtgttagggcatggcccaagaagcaaataatg
tgctgaactgaggattcaataatcatgtgcaaacaggctgtatcatggac
tacccaagccaattgcatgccacatcctagttccttaaaactaggtcccc
ttggtgctaattaaacttactatcctgggcagaggacagcagagccaggg
gaccaaatggagttagctgaccttcaagagctttctgggcaagcatgaag
gaatagactacttctatgacaattttccaatacactgtgccacaggcaag
ggtccaataggtatctgtaatgacgttcctcttatttttaaggcagggat
tctcattccttggttcctgttgttacgtgaatttccagaggacacaacta
gtatttacaggagaaaggctttatcacatctcctcccccaggagattccc
gtgtgacaccaaggaaacaccaggaacaaacttccctggtgatcactttg
gacctgtatggactcaacactaacactacctgcaaactgtgcaacacaca
aatcctcagaccccatcaaaggtcccagagcctcagtcctgaacaaaaca
cacagagcctaagttcacacacacagacacaattagaatgccaaataaat
ctaaggaggtaccatctctcagattataatgaacaatatcagagtaaagc
cttgaagcctgcagtcattgcattcacacactgagaggcaacaagtgtga
gcaggtccttccagctgtcgacagcaacaatcagattgcaagcatcccag
ggtcaagtacaaaataagttgataataaacacacagcactttgtttatcc
acattaaacacctgtcagggctactttaattgaatgagggagatcacact
ctcattcatagaagaaatgggttaacagatggcacataacagcacagggg
tactggggcataattcctacctgtaattca
gaattccagaggcagaggtcagcaggcctctgaaatgtgaagccagcctg
ggctatacaatgaaacttccatgtagaacatatcactaatcttgttgaaa
gcttgcatgttggagtttaagaaatgagtggtcccaagagctggaagcca
gtctgggctacattgtaacaggcccgcaagggctacacagcatgaacttg
tttcaaacaaacaaacaaacaaacaaacaaacaaaagcaagaaagagtct
tggccatagagtgtatagatgctacagtcagggttatacagaaaggagta
aagctgaacccccagtcagttttcttcttaataaggtgccataccatcac
ccccaaagtacaagagacataagccaaagatgattaaaactttatgaaca
ctctattactacttacaggtattttgaactaatcaattgctcacaagcag
aatcatgagtcacttaaagtgtctaatcccatgtcctacggttttacctt
caattgtgatagaacttaagagttatatgtcatatcttgaaaaccatgag
tgggtacttgagaagcaatggtgcagggctcatgttcctgatcagtccag
aaccaaaggactacagatggaaccagcacagactggaaggctgcccaggc
agcaatatggaactgactcagcaatcactatgtattccatagtcagaact
taacattcaaaacgtttgccctgggtcaattttcttagttgttacgccga
taacaaaacattccgtgagcaacagtgctgtcgattacaggaacttctgt
ggtcctagccaacaaggccaaagactcaccatccaggcagaaaggggaac
tgtacaacctctagcttgtattgtggcctttttgctttgaaacacttctc
tttctaagtgtccattaattctggactattaactggtaaactgccatcag
ctaatgccaacaggtatagaaccatttgaaaataaaaaccattttagcat
gacgtatagtcagcctcttttccacttagtattttataaatactcccaca
tttttaaacagagctcgattctaactacctattctgctacccactttccc
actcaagaattagactgcctttgctaaatatcttccaattcgtcatttct
cacagcaaaacacttggatcccttacttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4188209_4189191
seq2: B6Ng01-025C04.b_33_1012 (reverse)

seq1  TGAATTACAGGTAGGAATTATG-CCCAGTACCCTGTTGCCTGTATTGTGC  49
      |||||||||||||||||||||| ||||||||||   || ||||  |||||
seq2  TGAATTACAGGTAGGAATTATGCCCCAGTACCCCTGTG-CTGTTATGTGC  49

seq1  CATCTGTTAACCCAATTTCCTTCTATGAATG-GAGTGTGATCTCCCATCA  98
      ||||||||||||||  || |||||||||||| |||||||||||||| |||
seq2  CATCTGTTAACCCA--TTTCTTCTATGAATGAGAGTGTGATCTCCC-TCA  96

seq1  TTCAATT-AAGTAGCCCTGACAGGTGTTTAATTGTTGGATAAACAAAGTG  147
      ||||||| ||||||||||||||||||||||||   |||||||||||||||
seq2  TTCAATTAAAGTAGCCCTGACAGGTGTTTAAT--GTGGATAAACAAAGTG  144

seq1  CTGTGTGTTTATTATCAACTTATTTTGTACTTGACCCTGGGATGCTTGCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTTATTATCAACTTATTTTGTACTTGACCCTGGGATGCTTGCA  194

seq1  ATCTGATTGTTGCTGTCGACAGCTGGAAGGACCTGCTCACACTTGTTGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTGTTGCTGTCGACAGCTGGAAGGACCTGCTCACACTTGTTGCC  244

seq1  TCTCAGTGTGTGAATGCAATGACTGCAGGCTTCAAGGCTTTACTCTGATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGTGTGAATGCAATGACTGCAGGCTTCAAGGCTTTACTCTGATA  294

seq1  TTGTTCATTATAATCTGAGAGATGGTACCTCCTTAGATTTATTTGGCATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTATAATCTGAGAGATGGTACCTCCTTAGATTTATTTGGCATT  344

seq1  CTAATTGTGTCTGTGTGTGTGAACTTAGGCTCTGTGTGTTTTGTTCAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTGTCTGTGTGTGTGAACTTAGGCTCTGTGTGTTTTGTTCAGGA  394

seq1  CTGAGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTGTGTTGCACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTGTGTTGCACAG  444

seq1  TTTGCAGGTAGTGTTAGTGTTGAGTCCATACAGGTCCAAAGTGATCACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGTAGTGTTAGTGTTGAGTCCATACAGGTCCAAAGTGATCACCA  494

seq1  GGGAAGTTTGTTCCTGGTGTTTCCTTGGTGTCACACGGGAATCTCCTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTTGTTCCTGGTGTTTCCTTGGTGTCACACGGGAATCTCCTGGG  544

seq1  GGAGGAGATGTGATAAAGCCTTTCTCCTGTAAATACTAGTTGTGTCCTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATGTGATAAAGCCTTTCTCCTGTAAATACTAGTTGTGTCCTCT  594

seq1  GGAAATTCACGTAACAACAGGAACCAAGGAATGAGAATCCCTGCCTTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCACGTAACAACAGGAACCAAGGAATGAGAATCCCTGCCTTAAA  644

seq1  AATAAGAGGAACGTCATTACAGATACCTATTGGACCCTTGCCTGTGGCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGGAACGTCATTACAGATACCTATTGGACCCTTGCCTGTGGCAC  694

seq1  AGTGTATTGGAAAATTGTCATAGAAGTAGTCTATTCCTTCATGCTTGCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATTGGAAAATTGTCATAGAAGTAGTCTATTCCTTCATGCTTGCCC  744

seq1  AGAAAGCTCTTGAAGGTCAGCTAACTCCATTTGGTCCCCTGGCTCTGCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCTTGAAGGTCAGCTAACTCCATTTGGTCCCCTGGCTCTGCTG  794

seq1  TCCTCTGCCCAGGATAGTAAGTTTAATTAGCACCAAGGGGACCTAGTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCCCAGGATAGTAAGTTTAATTAGCACCAAGGGGACCTAGTTTT  844

seq1  AAGGAACTAGGATGTGGCATGCAATTGGCTTGGGTAGTCCATGATACAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTAGGATGTGGCATGCAATTGGCTTGGGTAGTCCATGATACAGC  894

seq1  CTGTTTGCACATGATTATTGAATCCTCAGTTCAGCACATTATTTGCTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCACATGATTATTGAATCCTCAGTTCAGCACATTATTTGCTTCT  944

seq1  TGGGCCATGCCCTAACACAGGATGAACACTGAATTC  983
      ||||||||||||||||||||||||||||||||||||
seq2  TGGGCCATGCCCTAACACAGGATGAACACTGAATTC  980

seq1: chr14_4096236_4097421
seq2: B6Ng01-025C04.g_66_1246

seq1  GAATTCCAGAGGCAGAGGTCAGCAGGCCTCTGAAATGTGAAGCCAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGGCAGAGGTCAGCAGGCCTCTGAAATGTGAAGCCAGCCTG  50

seq1  GGCTATACAATGAAACTTCCATGTAGAACATATCACTAATCTTGTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAATGAAACTTCCATGTAGAACATATCACTAATCTTGTTGAAA  100

seq1  GCTTGCATGTTGGAGTTTAAGAAATGAGTGGTCCCAAGAGCTGGAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCATGTTGGAGTTTAAGAAATGAGTGGTCCCAAGAGCTGGAAGCCA  150

seq1  GTCTGGGCTACATTGTAACAGGCCCGCAAGGGCTACACAGCATGAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGCTACATTGTAACAGGCCCGCAAGGGCTACACAGCATGAACTTG  200

seq1  TTTCAAACAAACAAACAAACAAACAAACAAACAAAAGCAAGAAAGAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAAACAAACAAACAAACAAACAAACAAAAGCAAGAAAGAGTCT  250

seq1  TGGCCATAGAGTGTATAGATGCTACAGTCAGGGTTATACAGAAAGGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAGAGTGTATAGATGCTACAGTCAGGGTTATACAGAAAGGAGTA  300

seq1  AAGCTGAACCCCCAGTCAGTTTTCTTCTTAATAAGGTGCCATACCATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACCCCCAGTCAGTTTTCTTCTTAATAAGGTGCCATACCATCAC  350

seq1  CCCCAAAGTACAAGAGACATAAGCCAAAGATGATTAAAACTTTATGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGTACAAGAGACATAAGCCAAAGATGATTAAAACTTTATGAACA  400

seq1  CTCTATTACTACTTACAGGTATTTTGAACTAATCAATTGCTCACAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTACTACTTACAGGTATTTTGAACTAATCAATTGCTCACAAGCAG  450

seq1  AATCATGAGTCACTTAAAGTGTCTAATCCCATGTCCTACGGTTTTACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAGTCACTTAAAGTGTCTAATCCCATGTCCTACGGTTTTACCTT  500

seq1  CAATTGTGATAGAACTTAAGAGTTATATGTCATATCTTGAAAACCATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTGATAGAACTTAAGAGTTATATGTCATATCTTGAAAACCATGAG  550

seq1  TGGGTACTTGAGAAGCAATGGTGCAGGGCTCATGTTCCTGATCAGTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTTGAGAAGCAATGGTGCAGGGCTCATGTTCCTGATCAGTCCAG  600

seq1  AACCAAAGGACTACAGATGGAACCAGCACAGACTGGAAGGCTGCCCAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGGACTACAGATGGAACCAGCACAGACTGGAAGGCTGCCCAGGC  650

seq1  AGCAATATGGAACTGACTCAGCAATCACTATGTATTCCATAGTCAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGGAACTGACTCAGCAATCACTATGTATTCCATAGTCAGAACT  700

seq1  TAACATTCAAAACGTTTGCCCTGGGTCAATTTTCTTAGTTGTTACGCCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAAAACGTTTGCCCTGGGTCAATTTTCTTAGTTGTTACGCCGA  750

seq1  TAACAAAACATTCCGTGAGCAACAGTGCTGTCGATTACAGGAACTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAACATTCCGTGAGCAACAGTGCTGTCGATTACAGGAACTTCTGT  800

seq1  GGTCCTAGCCAACAAGGCCAAAGACTCACCATCCAGGCAGAAAGGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAGCCAACAAGGCCAAAGACTCACCATCCAGGCAGAAAGGGGAAC  850

seq1  TGTACAACCTCTAGCTTGTATTGTGGCCTTTTTGCTTTGAAACACTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACCTCTAGCTTGTATTGTGGCCTTTTTGCTTTGAAACACTTCTC  900

seq1  TTTCTAAGTGTCCATTAATTCTGGACTATTAACTGGTAAACTGCCATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGTGTCCATTAATTCTGGACTATTAACTGGTAAACTGCCATCAG  950

seq1  CTAATGCCAACAGGTATAGAACCATTTGAAAATAAAAACCAATTTTAGGC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||  
seq2  CTAATGCCAACAGGTATAGAACCATTTGAAAATAAAAACC-ATTTTAG--  997

seq1  AATGACGTATAGTCAAGCCTC-TCTCCACTTAAGGTATTTTATAAATACT  1049
       ||||||||||||| |||||| | ||||||||  ||||||||||||||||
seq2  CATGACGTATAGTC-AGCCTCTTTTCCACTTA--GTATTTTATAAATACT  1044

seq1  CCCACATTTTTAAACAGAGCTCGAATTCTAACTACCTA-TCTGCTACCCA  1098
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  CCCACATTTTTAAACAGAGCTCG-ATTCTAACTACCTATTCTGCTACCCA  1093

seq1  C--TCCCACTCAAGATTAAGGACTG-CTTTGCTAAATATCTTCCAATCGC  1145
      |  |||||||||||| | | ||||| |||||||||||||||||||||   
seq2  CTTTCCCACTCAAGAATTA-GACTGCCTTTGCTAAATATCTTCCAATTCG  1142

seq1  TCA-TTCTCAACAGCAAAACACTTTGATTCTCCTTACTTATT  1186
      ||| ||||| |||||||||||||| |||   |||||||||||
seq2  TCATTTCTC-ACAGCAAAACACTTGGAT--CCCTTACTTATT  1181