BAC Information

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BAC

Clone NameB6Ng01-027B16
Chromosome14 (Build37)
Map Location 111,803,276 - 111,928,303
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B16.bB6Ng01-027B16.g
ACCDH857943DH857944
length1,059975
definitionDH857943|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B16, 5' end.DH857944|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,803,276 - 111,804,095)(111,927,310 - 111,928,303)
sequence
gaattcccagatgattgggcattgagtcatttaccctgttgggattttgc
attgctttgttagtatcttgactatgccctggtttttcccttttgaagaa
catatttaaattaattttggtttccataggagcccaaggttggaagactt
tgaccttttaagaaagattttggatttttttttaatgacattcgatactt
taaagagactgaatatttaatgtgtttggatttataaaggctgtgtacct
tgaaaatatttctgttttatattgtgattattaacatactggaaaccaag
gggatgaatgagaaaggacaggtcctaactgaaaagtgatgtgtttgtgt
gttcatgtgagaagagttctgggtagtgttactttaggttaacacaagct
aaaatcatcatggaggaaggagccctattcagaaaatgtctccaactgta
atgcatgttctccattagtgattaatggagtaggacccagctcatagtga
gtggtaaaatcctgggcaggtagttctggtttctttaaaaaagaaaggtg
agcaaaccataaaaagcaagccaatcagcagaattcccaagtggcctctg
tagcatctccagcctccctgttcctaccgcatttgagttcctgtcctgac
ttcctttggtgatgaacagcaatgtggaagtgtaagctgaataaacccgt
ttttccccaacctgcttttatttgtgttatttcattgcatcgcagatata
ttctcccaatcacactactgcctaatgcagcacaataatatatatatgta
tatgtatatatgtaatatattatatataatttattatacataacatatat
aatatatattgaatagtcctatatgtccattaataaataaatatatgatg
aaagttgggatatacacactgtaatttagtcatcataaataaattagaat
tttacacattcagaaaaaatggatgtatcttatacttatcattttaaatt
agaaatcattatttcagaaagaaaatctactccaccccaaaatgtgtggt
gtgtgtgtg
gaattccccaaagcttatggagcagggagttaggcatagttagcagtgag
caaaaagatactgtactgaaaacaatgttaaagacgaggactgattcctg
aaattgttttctgaccactatatgaactctggctagcatgtgttcaggtt
tatacaaagcatgtatgtgtgagtgtgcacacacatgcacacacacacac
acacacacacacgcgcgcgcgcgtgcacacacacacacacacacacacac
acacacacttttatccaaaatatgctattgtagataagtgataaaaatta
atcagtgaaatgttgataggctataagtagaaacagttccctaactgagc
tccttgcatgaattcaacttgtacttgtttctgcaataaatacaacaaaa
tttcatggagctaatttttaaaagatggaagtcagagtggtgtttaattt
ttccaaaagtgtactataaaccagttctaaaaggcattaagtcatagact
ccatcagttaaaatggtcggtttacttatagcttacataattctgtatta
taaatgggtaatgggttcatgttaaggaggatatatatatatatatatat
atatatatataactatttccatacattcatgctatcaaattttatgaaac
cttaataaagctataagagttgtttttcttttgtttgagtattagttcaa
atgaaatgagtgatagctaagggcattgttaacactcagtctgcttattc
ctgactaatgagaacaggctaacagaacggttatataacagaagtaaatt
aatgagtctcctggaattatctctaactatatgtaccatgggaagaaaaa
aaatcaatgaatctgaagaaaaaatcaataatatttgaaaacatcaattg
gcagaaatttatcctttttcattttttagaaatttctttattacgtttca
aatagcacccaaaaagtccttatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111803276_111804095
seq2: B6Ng01-027B16.b_288_1104

seq1  GTGTACCTTGAAAATATTTCTGTTTTATATTGTGATTATTAACATACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTTGAAAATATTTCTGTTTTATATTGTGATTATTAACATACTGG  50

seq1  AAACCAAGGGGATGAATGAGAAAGGACAGGTCCTAACTGAAAAGTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGGGGATGAATGAGAAAGGACAGGTCCTAACTGAAAAGTGATGT  100

seq1  GTTTGTGTGTTCATGTGAGAAGAGTTCTGGGTAGTGTTACTTTAGGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTTCATGTGAGAAGAGTTCTGGGTAGTGTTACTTTAGGTTAA  150

seq1  CACAAGCTAAAATCATCATGGAGGAAGGAGCCCTATTCAGAAAATGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTAAAATCATCATGGAGGAAGGAGCCCTATTCAGAAAATGTCTC  200

seq1  CAACTGTAATGCATGTTCTCCATTAGTGATTAATGGAGTAGGACCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAATGCATGTTCTCCATTAGTGATTAATGGAGTAGGACCCAGCT  250

seq1  CATAGTGAGTGGTAAAATCCTGGGCAGGTAGTTCTGGTTTCTTTAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGTGGTAAAATCCTGGGCAGGTAGTTCTGGTTTCTTTAAAAAA  300

seq1  GAAAGGTGAGCAAACCATAAAAAGCAAGCCAATCAGCAGAATTCCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTGAGCAAACCATAAAAAGCAAGCCAATCAGCAGAATTCCCAAGT  350

seq1  GGCCTCTGTAGCATCTCCAGCCTCCCTGTTCCTACCGCATTTGAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGTAGCATCTCCAGCCTCCCTGTTCCTACCGCATTTGAGTTCCT  400

seq1  GTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTGAAT  450

seq1  AAACCCGTTTTTCCCCAACCTGCTTTTATTTGTGTTATTTCATTGCATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGTTTTTCCCCAACCTGCTTTTATTTGTGTTATTTCATTGCATCG  500

seq1  CAGATATATTCTCCCAATCACACTACTGCCTAATGCAGCACAATAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATTCTCCCAATCACACTACTGCCTAATGCAGCACAATAATATA  550

seq1  TATATGTATATGTATATATGTAATATATTATATATAATTTATTATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATGTATATATGTAATATATTATATATAATTTATTATACATA  600

seq1  ACATATATAATATATATTGAATAGTCCTATATGTCCATTAATAAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAATATATATTGAATAGTCCTATATGTCCATTAATAAATAAAT  650

seq1  ATATGATGAAAAGTTGGGATATACACACTGTAATTTTAGTCATCATAAAT  700
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  ATATGATG-AAAGTTGGGATATACACACTGTAA-TTTAGTCATCATAAAT  698

seq1  AAAATTAGAATTTTACACATTCAGAAAAAAATGGATGTATCTTAAACTTA  750
       ||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  -AAATTAGAATTTTACACATTCAG-AAAAAATGGATGTATCTTATACTTA  746

seq1  TCATTTTAAATTAGAAATCATAAATTCAGAAAGAAAATCCTACTCACCCC  800
      ||||||||||||||||||||| | |||||||||||||| ||||||  |||
seq2  TCATTTTAAATTAGAAATCATTATTTCAGAAAGAAAAT-CTACTCCACCC  795

seq1  CAGA--GTGTTGTGTGTGTGTG  820
      || |  |||| |||||||||||
seq2  CAAAATGTGTGGTGTGTGTGTG  817

seq1: chr14_111927310_111928303
seq2: B6Ng01-027B16.g_66_1040 (reverse)

seq1  GTATAGGGGACTTTTTGGGATAGTATTTGAAATGTAAATAAAGAAAATAT  50
      |||||  |||||||||||| |  ||||||||| || ||||||| |||| |
seq2  GTATA-AGGACTTTTTGGG-TGCTATTTGAAACGT-AATAAAG-AAATTT  46

seq1  CTAAAAAAATTGAAAAAAGAAAAAAGTCTCATGCCAATTGATGTTTTCAA  100
      ||||||||  ||||||| || |||  ||   |||||||||||||||||||
seq2  CTAAAAAA--TGAAAAAGGATAAATTTC---TGCCAATTGATGTTTTCAA  91

seq1  ATTATATTGATTTTTTTCTTCAGATTACATTGATTTTTTTTTCTTCCCAT  150
      ||  |||||| ||||||||||||||| |||||| ||||||||||||||||
seq2  ATATTATTGA-TTTTTTCTTCAGATT-CATTGA-TTTTTTTTCTTCCCAT  138

seq1  GGTACAATATAGTTAGAGATAAATCCAGGAGACTCATTAATTTACTTCTG  200
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTAC-ATATAGTTAGAGATAATTCCAGGAGACTCATTAATTTACTTCTG  187

seq1  TTATATAACCGTTCTGTTAGGCCTGTTTCTCATTAGTCAGGAATAAGCAG  250
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  TTATATAACCGTTCTGTTA-GCCTG-TTCTCATTAGTCAGGAATAAGCAG  235

seq1  ACTGAGTGTTAACAATGCCCTTTAGCTATCAGTTCATTTCTATTTGAAAT  300
      |||||||||||||||||||| ||||||||||  ||||||| ||||||| |
seq2  ACTGAGTGTTAACAATGCCC-TTAGCTATCA-CTCATTTC-ATTTGAACT  282

seq1  AATATTAAAACAAAAGAAAAAACAACTTTTATAGCTTTATTAAGGTTTCA  350
      |||| | ||||||||| |||||||||| ||||||||||||||||||||||
seq2  AATACTCAAACAAAAG-AAAAACAACTCTTATAGCTTTATTAAGGTTTCA  331

seq1  TAAAAATTGATAGCATGAATGTATGGAAATAGTTATATATATATATATAT  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGATAGCATGAATGTATGGAAATAGTTATATATATATATATAT  381

seq1  ATATATATATATATCCTCCTTAACATGAACCCATTACCCATTTATAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATCCTCCTTAACATGAACCCATTACCCATTTATAATAC  431

seq1  AGAATTATGTAAGCTATAAGTAAACCGACCATTTTAACTGATGGAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGTAAGCTATAAGTAAACCGACCATTTTAACTGATGGAGTCTA  481

seq1  TGACTTAATGCCTTTTAGAACTGGTTTATAGTACACTTTTGGAAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAATGCCTTTTAGAACTGGTTTATAGTACACTTTTGGAAAAATTA  531

seq1  AACACCACTCTGACTTCCATCTTTTAAAAATTAGCTCCATGAAATTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACTCTGACTTCCATCTTTTAAAAATTAGCTCCATGAAATTTTGT  581

seq1  TGTATTTATTGCAGAAACAAGTACAAGTTGAATTCATGCAAGGAGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTGCAGAAACAAGTACAAGTTGAATTCATGCAAGGAGCTCAG  631

seq1  TTAGGGAACTGTTTCTACTTATAGCCTATCAACATTTCACTGATTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAACTGTTTCTACTTATAGCCTATCAACATTTCACTGATTAATTT  681

seq1  TTATCACTTATCTACAATAGCATATTTTGGATAAAAGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTTATCTACAATAGCATATTTTGGATAAAAGTGTGTGTGTGTGT  731

seq1  GTGTGTGTGTGTGTGTGTGCACGCGCGCGCGCGTGTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGCACGCGCGCGCGCGTGTGTGTGTGTGTGTGT  781

seq1  GTGTGTGCATGTGTGTGCACACTCACACATACATGCTTTGTATAAACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGTGTGCACACTCACACATACATGCTTTGTATAAACCTG  831

seq1  AACACATGCTAGCCAGAGTTCATATAGTGGTCAGAAAACAATTTCAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCTAGCCAGAGTTCATATAGTGGTCAGAAAACAATTTCAGGAA  881

seq1  TCAGTCCTCGTCTTTAACATTGTTTTCAGTACAGTATCTTTTTGCTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTCGTCTTTAACATTGTTTTCAGTACAGTATCTTTTTGCTCACT  931

seq1  GCTAACTATGCCTAACTCCCTGCTCCATAAGCTTTGGGGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTATGCCTAACTCCCTGCTCCATAAGCTTTGGGGAATTC  975