BAC Information

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BAC

Clone NameB6Ng01-027H12
Chromosome14 (Build37)
Map Location 103,802,975 - 103,955,551
singlet/doubletdoublet
Overlap geneScel
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneLOC100043448, Slain1, Ednrb, Pou4f1, 2610206B13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027H12.bB6Ng01-027H12.g
ACCDH858203DH858204
length1,0401,057
definitionDH858203|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H12, 5' end.DH858204|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,802,975 - 103,804,029)(103,954,477 - 103,955,551)
sequence
gaattcactgactcagctaggctgtctggctagagagcgcctttctccac
tttgtagctcagatgattggtgtgcatccccaaccccagcattttgctta
gtgcttaagatcagaactcaggtcttcccgattatagggcaagccacttt
actaactgccgtctccctagcaccctgattattttttaagttatgaatct
tttctgtgatttttttttacatgctaattctaaagctctcgcaggactac
aaataaaaaagcaagaagaagatcaaatctagaaaaagcattgtctactt
ttcagcttttgttgttgtataacgagtgttcatttgttgctttgctcatt
ggtttctgacaattaaaacatggctactgacttgacaaaatttaacccaa
ggaattttaatgctagagtcccctaatagggaacaaaaggtttgtaaatg
atgtatctacttgcttgtgtgtaggtgagatttaaattgacacaaatctt
gatggaaatgctccaagcatgtgtcaactagatcagcctgcacttcccac
tgatagtctcatggtggtctctacttcttagagtctgtcctaattaagga
gatggaaggttcacaaatattcgagttggaatcacaaattcagatattgg
gatctcctgcctaataagttctacattctttgggaacagaaatagccctc
aaatggataaagtaccatttcacaataacaataagaacagatgaatatag
gtcatgtcttctgagaacctttcagcatgggacatcgctgttagatcaca
gagcagaaaatggcagtgctgctggtagctcctaagatgatgatctgctc
aacccagaacacattcttagttttagttaatcccatatgtagtcaagttg
acacaaagaatagcatcacatgggtttctgttttttcagaaagcatcgct
tcccttgggcaaaggcatctagttccaattaccgagcagcttgcatcagc
tcagaactctgaccctatcaatgaatcctctgctctctcc
gaattccagtttgagttggaggtcatttctctaactgcagcacggccctg
ggttccatcaaggaccgccgacgcacacatccgtgagctttgctctcaca
gttcaccgtgtgtcttccttgtctcgcacaaatagcatttccattccagc
aatatcaaaggagcttgtaggaaccaagaagtgagctctcagctgttcct
gccaccatggctgctgaccgctgctgtgttaccctgcaccgagggatgga
ctctcactcctctgaagccatacgcttaaatatcctcctgcttctacaag
ttgcctaggtcatggttttttatcacagagataggaaggtcattaataca
gtcaccttatcaatttagggatcttaagggtgggtggcaaactgcaatcc
caaatgtcgaaatcctcaaatatcaaaatctctaatgtctaagaaaaata
aaattacaaatactttaggaacaagtgtgtatcagcaggctctcacacgc
atcattttattagttccataagcgtaccacgtgggtgcgttttttcccac
tgagggttaggaagctgtgtacatttccctacactggtgagcgtctcagc
caaggtctttggtacagaccttttgatgtccgtcacttgcttcttttctc
ttcaccatactacagctaatcaagtgttttaaatgcaaatttatttttca
aaggctgctaaatcagtcctggtggttcatcctcagagtccaaccctccc
cgcccccccaggctaactcagaagctttcaagttcaaagccagagaagca
gacccaatcagctcaacaagaacttgttccacagccacccgtgttttagt
gttaggatagataccagtgtatggggctaaaaaagtatggcaaagagcgt
acaggcacaagccatgttcaatgaaatgactgtcatgatgtgactttcta
gtggctagggtcactttctagtgcttacatgagtcagaatctcaggtctc
agcctccgaacagcttcttgcctactgatgagcctgaaactatgctagtc
ttcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103802975_103804029
seq2: B6Ng01-027H12.b_43_1082

seq1  GAATTCACTGACTCAGCTAGGCTGTCTGGCTAGAGAGCGCCTTTCTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACTCAGCTAGGCTGTCTGGCTAGAGAGCGCCTTTCTCCAC  50

seq1  TTTGTAGCTCAGATGATTGGTGTGCATCCCCAACCCCAGCATTTTGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGCTCAGATGATTGGTGTGCATCCCCAACCCCAGCATTTTGCTTA  100

seq1  GTGCTTAAGATCAGAACTCAGGTCTTCCCGATTATAGGGCAAGCCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAAGATCAGAACTCAGGTCTTCCCGATTATAGGGCAAGCCACTTT  150

seq1  ACTAACTGCCGTCTCCCTAGCACCCTGATTATTTTTTAAGTTATGAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTGCCGTCTCCCTAGCACCCTGATTATTTTTTAAGTTATGAATCT  200

seq1  TTTCTGTGATTTTTTTTTACATGCTAATTCTAAAGCTCTCGCAGGACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGATTTTTTTTTACATGCTAATTCTAAAGCTCTCGCAGGACTAC  250

seq1  AAATAAAAAAGCAAGAAGAAGATCAAATCTAGAAAAAGCATTGTCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAGCAAGAAGAAGATCAAATCTAGAAAAAGCATTGTCTACTT  300

seq1  TTCAGCTTTTGTTGTTGTATAACGAGTGTTCATTTGTTGCTTTGCTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTTGTTGTTGTATAACGAGTGTTCATTTGTTGCTTTGCTCATT  350

seq1  GGTTTCTGACAATTAAAACATGGCTACTGACTTGACAAAATTTAACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGACAATTAAAACATGGCTACTGACTTGACAAAATTTAACCCAA  400

seq1  GGAATTTTAATGCTAGAGTCCCCTAATAGGGAACAAAAGGTTTGTAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTAATGCTAGAGTCCCCTAATAGGGAACAAAAGGTTTGTAAATG  450

seq1  ATGTATCTACTTGCTTGTGTGTAGGTGAGATTTAAATTGACACAAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTACTTGCTTGTGTGTAGGTGAGATTTAAATTGACACAAATCTT  500

seq1  GATGGAAATGCTCCAAGCATGTGTCAACTAGATCAGCCTGCACTTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAATGCTCCAAGCATGTGTCAACTAGATCAGCCTGCACTTCCCAC  550

seq1  TGATAGTCTCATGGTGGTCTCTACTTCTTAGAGTCTGTCCTAATTAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTCTCATGGTGGTCTCTACTTCTTAGAGTCTGTCCTAATTAAGGA  600

seq1  GATGGAAGGTTCACAAATATTCGAGTTGGAATCACAAATTCAGATATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGGTTCACAAATATTCGAGTTGGAATCACAAATTCAGATATTGG  650

seq1  GATCTCCTGCCTAATAAGTTCTACATTCTTTGGGAACAGAAATAGCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTGCCTAATAAGTTCTACATTCTTTGGGAACAGAAATAGCCCTC  700

seq1  AAATGGATAAAGTACCATTTCACAATAACAATAAGAACAGATGAATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATAAAGTACCATTTCACAATAACAATAAGAACAGATGAATATAG  750

seq1  GTCATGTCTTCTGAGAACCTTTCAGCATGGGACATCGCTGTTAGATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTCTTCTGAGAACCTTTCAGCATGGGACATCGCTGTTAGATCACA  800

seq1  GAGCAGAAAATGGCAGTGCTGCTGGTAGCTCCTAAGATGATGATCTGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAAAATGGCAGTGCTGCTGGTAGCTCCTAAGATGATGATCTGCTC  850

seq1  AACCCAGAACACATTCTTAGGTTTTAGTTAATCCCATATGTAGTCAAGTT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACCCAGAACACATTCTTA-GTTTTAGTTAATCCCATATGTAGTCAAGTT  899

seq1  GACAACAAAGAATAGGCATCACAATGGGTTTCTGTTTTTTTCAGGAAAGC  950
      ||| |||||||||| ||||||| ||||||||||| |||||||| ||||| 
seq2  GAC-ACAAAGAATA-GCATCAC-ATGGGTTTCTG-TTTTTTCA-GAAAG-  943

seq1  CATCGCTTCCCTTGGGCAAAGGGCATCTAGTTCCCAATTAACCGAAGCAG  1000
      |||||||||||||||||||| ||||||||||| |||||| |||| |||||
seq2  CATCGCTTCCCTTGGGCAAA-GGCATCTAGTT-CCAATT-ACCG-AGCAG  989

seq1  CTTGCATCAGCTCAGAAACTCTGACCCTATCAAATGAAATCCTCTTGCTC  1050
      ||||||||||||||| ||||||||||||||| |||| ||||||| |||||
seq2  CTTGCATCAGCTCAG-AACTCTGACCCTATC-AATG-AATCCTC-TGCTC  1035

seq1  TCTCC  1055
      |||||
seq2  TCTCC  1040

seq1: chr14_103954477_103955551
seq2: B6Ng01-027H12.g_68_1124 (reverse)

seq1  TCAAGAAGAACTAGCATGATTTCCAGGCTCATACAACGTAGGCCAGAAGC  50
      |||||||| |||||||| | || ||||||||| ||  |||||| ||||||
seq2  TCAAGAAG-ACTAGCAT-AGTTTCAGGCTCAT-CA--GTAGGCAAGAAGC  45

seq1  TGGTCTGGAGCTGAGACCCTGAGATTCTGACTCATTGTTAAGCACCTAGG  100
      || || |  ||||||| ||||||||||||||||||   |||||| ||| |
seq2  TGTTCGGAGGCTGAGA-CCTGAGATTCTGACTCAT--GTAAGCA-CTA-G  90

seq1  AAAGTGACCCCTAGCCACTAGAAAGTCACATCATGACAGTCATTTTCATT  150
      ||||||| |||||||||||||||||||||||||||||||||| ||||| |
seq2  AAAGTGA-CCCTAGCCACTAGAAAGTCACATCATGACAGTCA-TTTCA-T  137

seq1  TGAACATGGCCTTGTGCCTTGTACGCTCTTTGCCATACTTTTTTTAGCCC  200
      ||||||||| |||||||| ||||||||||||||||||| |||||||||||
seq2  TGAACATGG-CTTGTGCC-TGTACGCTCTTTGCCATAC-TTTTTTAGCCC  184

seq1  CATACACTGGTATCTATCCTAACACTAAAACACGGGTGGCTGTGGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATACACTGGTATCTATCCTAACACTAAAACACGGGTGGCTGT-GGAACA  233

seq1  AGTTCTTGTTGAGCTGATTGGGTCTGCTTCTCTGGCTTTGAACTTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGTTGAGCTGATTGGGTCTGCTTCTCTGGCTTTGAACTTGAAAG  283

seq1  CTTCCTGAGTTAGCCTGGGGGGGCGGGGAGGGTTGGACTCTGAGGATGAA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTT-CTGAGTTAGCCTGGGGGGGCGGGGAGGGTTGGACTCTGAGGATGAA  332

seq1  CCACCAGGACTGATTTAGCAGCCTTTGAAAAATAAATTTGCATTTAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGACTGATTTAGCAGCCTTTGAAAAATAAATTTGCATTTAAAAC  382

seq1  ACTTGATTAGCTGTAGTATGGTGAAGAGAAAAGAAGCAAGTGACGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTAGCTGTAGTATGGTGAAGAGAAAAGAAGCAAGTGACGGACAT  432

seq1  CAAAAGGTCTGTACCAAAGACCTTGGCTGAGACGCTCACCAGTGTAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTCTGTACCAAAGACCTTGGCTGAGACGCTCACCAGTGTAGGGA  482

seq1  AATGTACACAGCTTCCTAACCCTCAGTGGGAAAAAACGCACCCACGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACAGCTTCCTAACCCTCAGTGGGAAAAAACGCACCCACGTGGT  532

seq1  ACGCTTATGGAACTAATAAAATGATGCGTGTGAGAGCCTGCTGATACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTATGGAACTAATAAAATGATGCGTGTGAGAGCCTGCTGATACACA  582

seq1  CTTGTTCCTAAAGTATTTGTAATTTTATTTTTCTTAGACATTAGAGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCTAAAGTATTTGTAATTTTATTTTTCTTAGACATTAGAGATTT  632

seq1  TGATATTTGAGGATTTCGACATTTGGGATTGCAGTTTGCCACCCACCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGAGGATTTCGACATTTGGGATTGCAGTTTGCCACCCACCCTT  682

seq1  AAGATCCCTAAATTGATAAGGTGACTGTATTAATGACCTTCCTATCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCTAAATTGATAAGGTGACTGTATTAATGACCTTCCTATCTCTG  732

seq1  TGATAAAAAACCATGACCTAGGCAACTTGTAGAAGCAGGAGGATATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAAACCATGACCTAGGCAACTTGTAGAAGCAGGAGGATATTTAA  782

seq1  GCGTATGGCTTCAGAGGAGTGAGAGTCCATCCCTCGGTGCAGGGTAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATGGCTTCAGAGGAGTGAGAGTCCATCCCTCGGTGCAGGGTAACAC  832

seq1  AGCAGCGGTCAGCAGCCATGGTGGCAGGAACAGCTGAGAGCTCACTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGGTCAGCAGCCATGGTGGCAGGAACAGCTGAGAGCTCACTTCTT  882

seq1  GGTTCCTACAAGCTCCTTTGATATTGCTGGAATGGAAATGCTATTTGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTACAAGCTCCTTTGATATTGCTGGAATGGAAATGCTATTTGTGC  932

seq1  GAGACAAGGAAGACACACGGTGAACTGTGAGAGCAAAGCTCACGGATGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGGAAGACACACGGTGAACTGTGAGAGCAAAGCTCACGGATGTG  982

seq1  TGCGTCGGCGGTCCTTGATGGAACCCAGGGCCGTGCTGCAGTTAGAGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCGGCGGTCCTTGATGGAACCCAGGGCCGTGCTGCAGTTAGAGAAA  1032

seq1  TGACCTCCAACTCAAACTGGAATTC  1075
      |||||||||||||||||||||||||
seq2  TGACCTCCAACTCAAACTGGAATTC  1057