BAC Information

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BAC

Clone NameB6Ng01-027H14
Chromosome14 (Build37)
Map Location 54,644,711 - 54,645,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027H14.bB6Ng01-027H14.g
ACCDH858207DH858208
length4501,026
definitionDH858207|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H14, 5' end.DH858208|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atctcatagaagggcaccaatccctgacactatcactgatgctatgttgt
acttgcagatagtagccttacatggctgtcctctaagaggctctaccagt
agctgacagagacagattcagacactcacagccaagcattggatggagat
caagggtccctacagaagagttagggaaaggattgaagaaactgaagggt
gtggacaccccaaatgaagaccaacagtgtgaactcagctggagccctgg
gagttcccagggactgagccaccaactgaagagcatgcacaggctgatcc
aaggtccctgccacatatgtagcagaggactgccttgtctggcctcagtg
ggagaggatgtacctaatcctatagagatatgatgccccagggtggggga
tccacagggggagcaccctctaagaggtgaaggggagggaggatggggaa

gaattcctggtgtcaggaaaaattggctcaatttccagtactatcctctg
aatgacccataacaagtttgcacaccaattatctggggttaggccacact
tcactaattaagagcaccaccctccatttgatcatcctcatgttaaaatc
cagtggcatgttcaagcattctcaagctgttggtccttctgaccagctgg
ctgcatgtctgttgaggtgtaatatagatccatagaataccttagggaac
ttagtcaggtggtatgtactgaagaggaaagctttgctatagcaaatagc
tacaaatcagaaccactagaagggagagacccatgggcaacccctgaaca
ggttctgaacatgaaattttaagaggcaggatggcgctagctcctcgtgg
ccttgtctgcgaacaatcacagagttttatggactgggctagtttacttg
agcctttggtatcctgggctttattggggcttgatcattatgtccaaatg
gttaaactttgacctctagcccctccaggtgggtctagttacttccttta
gtctggttctttcagagctcaaaattcatatggcatgttcccaagctcct
gacataaatcatactgatggattgattcatgattggagtcctctggcaaa
cagcgacactcttgttagaaggggcaaggggcccagagagcatcatcaaa
tagctgaatgcaaagggatcctcctgaaaaggcaaggagctcgtgcacaa
atctccaccagggacagacacatgcccaaggcctcggagtctgagaggtg
acccagttccagcctgcagttattcctcctgaaaggaaagaaaacatctc
agcgcagaatgacccaggcagctcctggagctgttctgcacaagaggcag
gagctgtgtcagatttacttttaccttgattgccgtctaacttgtgccat
actttcagaagtcacaattctcactagcatcttcgtcagttcttgacttt
tttttttttcgagcaggtttctctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54644711_54645747
seq2: B6Ng01-027H14.g_69_1094 (reverse)

seq1  ACAGAGAAACCCTGTCTCGAAAAAAAAAAAAAAGTCAAAGAACTGGACGA  50
      ||||||||| |||| ||||  ||||||||||||||| ||||||| |||||
seq2  ACAGAGAAA-CCTG-CTCG--AAAAAAAAAAAAGTC-AAGAACT-GACGA  44

seq1  AGATGCTTAGTGAGAATTTGTGACTTTCTGAAAGTATGGCACAAGGTTAG  100
      |||||| ||||||||| ||||||| ||||||||||||||||||| |||||
seq2  AGATGC-TAGTGAGAA-TTGTGAC-TTCTGAAAGTATGGCACAA-GTTAG  90

seq1  ACGGCAATCAAGGTTAAAAAGTAAATCTGACACAGCTCCTGCCTCTGTGT  150
      ||||||||||||||  |||||||||||||||||||||||||||||| |||
seq2  ACGGCAATCAAGGT--AAAAGTAAATCTGACACAGCTCCTGCCTCT-TGT  137

seq1  GCAGAACAGCT-CAGGAGCTGCCTGGTTCATTCTGCGCTGGGATGGTTTT  199
      ||||||||||| |||||||||||||| ||||||||||||| ||| |||||
seq2  GCAGAACAGCTCCAGGAGCTGCCTGGGTCATTCTGCGCTGAGAT-GTTTT  186

seq1  CTTT-CTTTCAGGAGGAATAACTGCAGGCTGG-ACTGGGTCACCTCTCAG  247
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTTCCTTTCAGGAGGAATAACTGCAGGCTGGAACTGGGTCACCTCTCAG  236

seq1  ACTCCGAGGCCTTGGGCATGTGTCTGTCCCTGGTGGGGATTTGTGCACGA  297
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCCGAGGCCTTGGGCATGTGTCTGTCCCTGGTGGAGATTTGTGCACGA  286

seq1  GCTCCTTGCCTTTTCAGGAGGATCCCTTTGCATTCAGCTATTTGATGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGCCTTTTCAGGAGGATCCCTTTGCATTCAGCTATTTGATGATG  336

seq1  CTCTCTGGGCCCCTTGCCCCTTCTAACAAGAGTGTCGCTGTTTGCCAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGGCCCCTTGCCCCTTCTAACAAGAGTGTCGCTGTTTGCCAGAG  386

seq1  GACTCCAATCATGAATCAATCCATCAGTATGATTTATGTCAGGAGCTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAATCATGAATCAATCCATCAGTATGATTTATGTCAGGAGCTTGG  436

seq1  GAACATGCCATATGAATTTTGAGCTCTGAAAGAACCAGACTAAAGGAAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCCATATGAATTTTGAGCTCTGAAAGAACCAGACTAAAGGAAGT  486

seq1  AACTAGACCCACCTGGAGGGGCTAGAGGTCAAAGTTTAACCATTTGGACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACCCACCTGGAGGGGCTAGAGGTCAAAGTTTAACCATTTGGACA  536

seq1  TAATGATCAAGCCCCAATAAAGCCCAGGATACCAAAGGCTCAAGTAAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATCAAGCCCCAATAAAGCCCAGGATACCAAAGGCTCAAGTAAACT  586

seq1  AGCCCAGTCCATAAAACTCTGTGATTGTTCGCAGACAAGGCCACGAGGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTCCATAAAACTCTGTGATTGTTCGCAGACAAGGCCACGAGGAG  636

seq1  CTAGCGCCATCCTGCCTCTTAAAATTTCATGTTCAGAACCTGTTCAGGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGCCATCCTGCCTCTTAAAATTTCATGTTCAGAACCTGTTCAGGGG  686

seq1  TTGCCCATGGGTCTCTCCCTTCTAGTGGTTCTGATTTGTAGCTATTTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCATGGGTCTCTCCCTTCTAGTGGTTCTGATTTGTAGCTATTTGCT  736

seq1  ATAGCAAAGCTTTCCTCTTCAGTACATACCACCTGACTAAGTTCCCTAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGCTTTCCTCTTCAGTACATACCACCTGACTAAGTTCCCTAAG  786

seq1  GTATTCTATGGATCTATATTACACCTCAACAGACATGCAGCCAGCTGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTATGGATCTATATTACACCTCAACAGACATGCAGCCAGCTGGTC  836

seq1  AGAAGGACCAACAGCTTGAGAATGCTTGAACATGCCACTGGATTTTAACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACCAACAGCTTGAGAATGCTTGAACATGCCACTGGATTTTAACA  886

seq1  TGAGGATGATCAAATGGAGGGTGGTGCTCTTAATTAGTGAAGTGTGGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGATCAAATGGAGGGTGGTGCTCTTAATTAGTGAAGTGTGGCCT  936

seq1  AACCCCAGATAATTGGTGTGCAAACTTGTTATGGGTCATTCAGAGGATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGATAATTGGTGTGCAAACTTGTTATGGGTCATTCAGAGGATAG  986

seq1  TACTGGAAATTGAGCCAATTTTTCCTGACACCAGGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAAATTGAGCCAATTTTTCCTGACACCAGGAATTC  1026