BAC Information

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BAC

Clone NameB6Ng01-028H07
Chromosome14 (Build37)
Map Location 80,765,566 - 80,920,939
singlet/doubletdoublet
Overlap geneLOC672828
Upstream geneNarg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028H07.bB6Ng01-028H07.g
ACCDH858926DH858927
length1,1371,127
definitionDH858926|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H07, 5' end.DH858927|Mus musculus domesticus DNA, BAC clone: B6Ng01-028H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,919,793 - 80,920,939)(80,765,566 - 80,766,704)
sequence
gaattcagcaagtaacagaatactgttttagtttttaataggctatgcta
gctacactgttataaatggacttaatactatctacagaaggtcaactgat
atattgttgcaatagtttataagattattaaaactaatacaagatactac
cagtgagaaacaaaaactagaaatgacaagatggtgaggaaacaatcaca
gtaaaattttattttcaatagagatcttagaatgactaccaggcattagg
actgcagggtgggtggatgttggcacagaaatatcagatgtatctcaggc
cagcagaagttggcccaaataacccctgcaaatacaggaagaatgtgttt
atagcaaaagataataagttcagtgttgggagtattagctttattggcta
gcagatgcctactagatatacagcaggagctttctaaagtacatattaag
aagtgtgagattcaaaggaaaaatgagaaagtccagaagagggttaaatt
cttatctgtgtagtccaagccataaaatgtgatgttttcctaggtagact
tttgtcagacatagggttttgtcctaaggggaaaaccctagctctatgct
ccatggacacctcaagtcaccattgtacctattatattcctttgaaaatg
tattctttctagaatatggaaaaagaaaagcaaaatagttgaggctataa
acctgaacaagattcagagatgagcagaaaatccgcaaatacaagatgtg
attttcttatcttgttacactctcaaggctatcttccacagaactccacg
gtgctgctgacagcaagcagccattctcggtttcaaaggcagaataatga
caatgctgctggaactctcaccacttagaatggtgcttccaagagaaaaa
aaatctattttaaggagataagtattactttcaaggaaattaagtaaaca
gctgaccgaagactcaaatggaatggataaataaatagacccaataaagt
tgaataaaaaaaacatgtagaaaagaagcacatttcctgcaggagcacgg
aaaggagatgctgtatctgaatgtggaatatttcccacagggtcatgtgt
tgaacatttggcatccagctaccatgcagtcatggga
gaattcacatgtaaactgcacccatagattctgctttcaagtttttttct
aaatggtaagctcaggtctcacttctaaaggatattcctatttaaggatg
tatagcctttctgagtaattctagatgagctttcttgtccctgaaactca
tgaaccacatagtcaaatgactatttccaactctttgctttgcatcctct
attaccaagtcaatcaggctatgtcaggatctgtgtcctgggatattgag
actagtacacaaatagatgatttgaaataggtgaaggaatttctatttgg
aaatgtcatcttaggaaacataagccataccttgagctttagaggctaag
ttttacctttgcaatatttgtaatgtgcaagaaagggtgagcttacttat
tccatttatacaatataatgaataatgtgaataatgcagtatatatttca
tttttggtgtatgacctaccgatgctttatttcctacttttacttctatt
gtgaattactaagtaatattttgaaatgtatatcttcatagttacctgta
gacacttactacaaactttttgaaaactcaaaacaccatgtctttaatta
tcaaataaaatatccatttataaccttagaagataaccgagtagaggatg
gtattcagtttaaatggtttgaaatattctactatactttattaattagt
tattttattacttatatcccaagatgttgccatgcccttctggtcacaga
attctttactctgccccttcccctcacttctgagagaattccccatgggc
atcctgctcccctaggcatcaagtctctacaagattaagcacaggctttt
ccactgagtcaaacaaggcagttctctactacatatgcactaggggcctt
tggaccagcccctgtatgctctttggctagtggcttagtctctgggagct
cccaggggtccaagttagtgacactgttggtcttcctatgcaataccatc
cccttcagtcttcaatcctctcctaatcctacataggtcactgacctcag
tcagtgcttgctgtatcttgtctaagtaacttgctgttgagtcactcgaa
gaaaccatgctaaacttcttatagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80919793_80920939
seq2: B6Ng01-028H07.b_46_1182 (reverse)

seq1  TCCCATGACTGCATTGGTAGCTGGATGCCAAATGTTCAAACACATGACCC  50
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TCCCATGACTGCA-TGGTAGCTGGATGCCAAATGTTC-AACACATGACCC  48

seq1  TGTGGGAAATATTTCACATTCAAGATACAGCATCTCCTTTCCTGTGCTCT  100
      ||||||||||||| ||||||| |||||||||||||||||||| |||||| 
seq2  TGTGGGAAATATTCCACATTC-AGATACAGCATCTCCTTTCC-GTGCTCC  96

seq1  TGCAGGAAATGTGCTTCTTTTTCTACATGTTTTTTTTTATTCAACTTTAT  150
      ||||||||||||||||| ||||||||||| ||||||||||||||||||| 
seq2  TGCAGGAAATGTGCTTC-TTTTCTACATG-TTTTTTTTATTCAACTTTA-  143

seq1  TTGAGTCTATTTTATTTATCCATTCCATTTGAGTCTTCGGTCAGCTGTTT  200
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTA-TTTATTTATCCATTCCATTTGAGTCTTCGGTCAGCTGTTT  192

seq1  ACTTAATTTCCTTGAAAGTAATACTTATCTTCCTTAAAATAGATTTTTTT  250
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  ACTTAATTTCCTTGAAAGTAATACTTATC-TCCTTAAAATAGA-TTTTTT  240

seq1  TTCTCTTGGAAGCACCATTCTAAGTGGTGAGAGTTCCAGCAGCATTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGGAAGCACCATTCTAAGTGGTGAGAGTTCCAGCAGCATTGTCA  290

seq1  TTATTCTGCCTTTGAAACCGAGAATGGCTGCTTGCTGTCAGCAGCACCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCCTTTGAAACCGAGAATGGCTGCTTGCTGTCAGCAGCACCGT  340

seq1  GGAGTTCTGTGGAAGATAGCCTTGAGAGTGTAACAAGATAAGAAAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCTGTGGAAGATAGCCTTGAGAGTGTAACAAGATAAGAAAATCAC  390

seq1  ATCTTGTATTTGCGGATTTTCTGCTCATCTCTGAATCTTGTTCAGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATTTGCGGATTTTCTGCTCATCTCTGAATCTTGTTCAGGTTTA  440

seq1  TAGCCTCAACTATTTTGCTTTTCTTTTTCCATATTCTAGAAAGAATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCAACTATTTTGCTTTTCTTTTTCCATATTCTAGAAAGAATACAT  490

seq1  TTTCAAAGGAATATAATAGGTACAATGGTGACTTGAGGTGTCCATGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGAATATAATAGGTACAATGGTGACTTGAGGTGTCCATGGAGC  540

seq1  ATAGAGCTAGGGTTTTCCCCTTAGGACAAAACCCTATGTCTGACAAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTAGGGTTTTCCCCTTAGGACAAAACCCTATGTCTGACAAAAGT  590

seq1  CTACCTAGGAAAACATCACATTTTATGGCTTGGACTACACAGATAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGGAAAACATCACATTTTATGGCTTGGACTACACAGATAAGAAT  640

seq1  TTAACCCTCTTCTGGACTTTCTCATTTTTCCTTTGAATCTCACACTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTCTTCTGGACTTTCTCATTTTTCCTTTGAATCTCACACTTCTT  690

seq1  AATATGTACTTTAGAAAGCTCCTGCTGTATATCTAGTAGGCATCTGCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACTTTAGAAAGCTCCTGCTGTATATCTAGTAGGCATCTGCTAG  740

seq1  CCAATAAAGCTAATACTCCCAACACTGAACTTATTATCTTTTGCTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGCTAATACTCCCAACACTGAACTTATTATCTTTTGCTATAAA  790

seq1  CACATTCTTCCTGTATTTGCAGGGGTTATTTGGGCCAACTTCTGCTGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTCCTGTATTTGCAGGGGTTATTTGGGCCAACTTCTGCTGGCC  840

seq1  TGAGATACATCTGATATTTCTGTGCCAACATCCACCCACCCTGCAGTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACATCTGATATTTCTGTGCCAACATCCACCCACCCTGCAGTCCT  890

seq1  AATGCCTGGTAGTCATTCTAAGATCTCTATTGAAAATAAAATTTTACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGGTAGTCATTCTAAGATCTCTATTGAAAATAAAATTTTACTGT  940

seq1  GATTGTTTCCTCACCATCTTGTCATTTCTAGTTTTTGTTTCTCACTGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTCCTCACCATCTTGTCATTTCTAGTTTTTGTTTCTCACTGGTA  990

seq1  GTATCTTGTATTAGTTTTAATAATCTTATAAACTATTGCAACAATATATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGTATTAGTTTTAATAATCTTATAAACTATTGCAACAATATATC  1040

seq1  AGTTGACCTTCTGTAGATAGTATTAAGTCCATTTATAACAGTGTAGCTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACCTTCTGTAGATAGTATTAAGTCCATTTATAACAGTGTAGCTAG  1090

seq1  CATAGCCTATTAAAAACTAAAACAGTATTCTGTTACTTGCTGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTATTAAAAACTAAAACAGTATTCTGTTACTTGCTGAATTC  1137

seq1: chr14_80765566_80766704
seq2: B6Ng01-028H07.g_66_1192

seq1  GAATTCACATGTAAACTGCACCCATAGATTCTGCTTTCAAGTTTTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTAAACTGCACCCATAGATTCTGCTTTCAAGTTTTTTTCT  50

seq1  AAATGGTAAGCTCAGGTCTCACTTCTAAAGGATATTCCTATTTAAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTAAGCTCAGGTCTCACTTCTAAAGGATATTCCTATTTAAGGATG  100

seq1  TATAGCCTTTCTGAGTAATTCTAGATGAGCTTTCTTGTCCCTGAAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTTTCTGAGTAATTCTAGATGAGCTTTCTTGTCCCTGAAACTCA  150

seq1  TGAACCACATAGTCAAATGACTATTTCCAACTCTTTGCTTTGCATCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACATAGTCAAATGACTATTTCCAACTCTTTGCTTTGCATCCTCT  200

seq1  ATTACCAAGTCAATCAGGCTATGTCAGGATCTGTGTCCTGGGATATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCAAGTCAATCAGGCTATGTCAGGATCTGTGTCCTGGGATATTGAG  250

seq1  ACTAGTACACAAATAGATGATTTGAAATAGGTGAAGGAATTTCTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTACACAAATAGATGATTTGAAATAGGTGAAGGAATTTCTATTTGG  300

seq1  AAATGTCATCTTAGGAAACATAAGCCATACCTTGAGCTTTAGAGGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATCTTAGGAAACATAAGCCATACCTTGAGCTTTAGAGGCTAAG  350

seq1  TTTTACCTTTGCAATATTTGTAATGTGCAAGAAAGGGTGAGCTTACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTTGCAATATTTGTAATGTGCAAGAAAGGGTGAGCTTACTTAT  400

seq1  TCCATTTATACAATATAATGAATAATGTGAATAATGCAGTATATATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTATACAATATAATGAATAATGTGAATAATGCAGTATATATTTCA  450

seq1  TTTTTGGTGTATGACCTACCGATGCTTTATTTCCTACTTTTACTTCTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTGTATGACCTACCGATGCTTTATTTCCTACTTTTACTTCTATT  500

seq1  GTGAATTACTAAGTAATATTTTGAAATGTATATCTTCATAGTTACCTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTACTAAGTAATATTTTGAAATGTATATCTTCATAGTTACCTGTA  550

seq1  GACACTTACTACAAACTTTTTGAAAACTCAAAACACCATGTCTTTAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTACTACAAACTTTTTGAAAACTCAAAACACCATGTCTTTAATTA  600

seq1  TCAAATAAAATATCCATTTATAACCTTAGAAGATAACCGAGTAGAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAAATATCCATTTATAACCTTAGAAGATAACCGAGTAGAGGATG  650

seq1  GTATTCAGTTTAAATGGTTTGAAATATTCTACTATACTTTATTAATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTTTAAATGGTTTGAAATATTCTACTATACTTTATTAATTAGT  700

seq1  TATTTTATTACTTATATCCCAAGATGTTGCCATGCCCTTCTGGTCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTACTTATATCCCAAGATGTTGCCATGCCCTTCTGGTCACAGA  750

seq1  ATTCTTTACTCTGCCCCTTCCCCTCACTTCTGAGAGAATTCCCCATGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTACTCTGCCCCTTCCCCTCACTTCTGAGAGAATTCCCCATGGGC  800

seq1  ATCCTGCTCCCCTAGGCATCAAGTCTCTACAAGATTAAGCACAGGCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCTCCCCTAGGCATCAAGTCTCTACAAGATTAAGCACAGGCTTTT  850

seq1  CCACTGAGTCAAAACAAGGCAGTTCTCTACTACATATGCACTAGGGGCCT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGTC-AAACAAGGCAGTTCTCTACTACATATGCACTAGGGGCCT  899

seq1  TTGGACCAGCCCCTGTATGCTCTTTGGCTAGTGGCTTAGTCTCTGGGAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCAGCCCCTGTATGCTCTTTGGCTAGTGGCTTAGTCTCTGGGAGC  949

seq1  TCCCAGGGGTCCAAGTTAGTTGACACTGTTGGTCTTCCTATGCAATTACC  1000
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TCCCAGGGGTCCAAGTTAG-TGACACTGTTGGTCTTCCTATGCAA-TACC  997

seq1  ATCCCCTCCAGTTCCTTCAATCCTTCTCCTAATTCTTACATAGGGGTCAC  1050
      ||||||| ||||  ||||||||| |||||||| || ||||||  ||||||
seq2  ATCCCCTTCAGT--CTTCAATCC-TCTCCTAA-TCCTACATA--GGTCAC  1041

seq1  TGACCTCAGTCCAGTGCTTGGCTGTATC-TGTCTTAGTAAACTGCTGGTA  1099
      |||||||||| |||||||| |||||||| ||||| |||||  |||| || 
seq2  TGACCTCAGT-CAGTGCTT-GCTGTATCTTGTCTAAGTAACTTGCT-GTT  1088

seq1  GAGTCACTCAGAGGATAACCATGCTAGACTTC-TATAGTCA  1139
      ||||||||| || || |||||||||| ||||| ||||||||
seq2  GAGTCACTC-GAAGA-AACCATGCTAAACTTCTTATAGTCA  1127