BAC Information

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BAC

Clone NameB6Ng01-028P05
Chromosome14 (Build37)
Map Location 56,109,670 - 56,183,552
singlet/doubletdoublet
Overlap geneBC036313, Cpne6, Nrl, Pck2, Wdr23
Upstream genePrmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4
Downstream gene1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P05.bB6Ng01-028P05.g
ACCDH859287DH859288
length9841,102
definitionDH859287|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P05, 5' end.DH859288|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,109,670 - 56,110,655)(56,182,430 - 56,183,552)
sequence
gaattctgcttcgggtggccgaggcgtgggtggcacgccagtagaaacgc
tgcaccccgcccctgagatagctcggacaccaggcgccgcgctccgggct
tctcacgaggtagtccgcgggaggggtcgtcgcgagcgcgcgcggggtct
cacgcggctcggaagctcagcgcgcatgctccattggccaactctccggg
aggggcgggagacccagagctcagtagccgggggggaggagcgctcgcgc
agccgcccctgacgggagcgggctccgccgctactgcagcgctcagcgcc
gggccctgccggagccgggactagcatgtgcggcgcctctcgggaggcgg
cggcggcggcggctcctctgcagcagcagcggcggcggcggcagcagcag
cggcggccgccatggccaaggccagcgtggagctcacccgcgagctgcaa
ggtacgaggttgccttcatctccggacaccgggtccgcgagcatcgagac
ccagtgctttcctgcggtacaccccagcccggcgcctcccgccccctcac
gcatccctcgctcttaggcagtcccttcctctgaatctctagacccagct
ttgctttccgtggagcatccttctctgccccactcgcctcaccctatcag
aaccttcctgtcccggagccgcccgtcccgctctttggtgacaggagcag
ttccctggcgctcttgggggctgattctcagcgttcttgacccacccctc
tgcaaagcatccagtcttccctccggagagtcccagctttctcccaccct
cgccgggcggggccaggcgttggggagctgcccctggttcttgactgctg
cttatctcaccaccctccctcctcccgggcctcgccccggaactggtcct
agagaagcccctagcgcctaggccatggggcataggaggggagtcaggca
gaggccccgactgagctaaaccaaagctaggttt
gaattctttaggattgcgggaaagagaatggaagtaaaactaaggaggga
gaaggcaaatggcagagatgtccgagcagctggggagtgattttctgagg
acacagcatgctagcttatctcagaagagaagaacacacaggggctgggt
tctgaggtccaaagctgaagacactgcagaggtctggtccacactcactg
tagtcagaccagctggagtacaggaagtggtttccatcaggggtgaaggc
cacgtccaggacactccagcctacatcccgagccttgatgcttttgaatt
tgtggaatcggccatagcgacagtcgtacagtcggatcgtctgatctgca
gagagggtatcaggcaaaattatgggccattttctttgtagtcgtctcca
tcagacctcttttgcttgatgtctctgaggtctccctcagtacaccatct
caaggctaaacatctctaagtcaggttttgagattcctgggtctgaggct
ttccagtctagttggaagtatatttttaggttaaggaagctagtaagtct
ggggtctagtaccttggcaagcagacatgaagatttgaccatctttgctg
tagatgccgcagaaagccttctgagagtaggtatcagtgaagcttagatc
attgggcaagaagctagagaaggggagagagagggaggccagggagtgct
gagtgagaggaactcagcacaatagaatgcagccatatcctttggccttg
tatataattcccgtgtctgttctgtcatcctttatacttccctagtttga
ttactctcgcagctccagcccccttcaaactagccttggtattctgagaa
accttttaacttgcacccttccaagtataggacacaggtctagctggctc
ctagagtctctccaccaaacccgtactcactgagacatcactcgagactg
ttctcaaggagagcttccccggtggcagaggcccgttctctctaatgagg
atggggatatgctagcacaattggagagcatgtacccacctagccccttc
ttcgaggcagacagcccacagcattgggatgcagctgctaacactcaagg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56109670_56110655
seq2: B6Ng01-028P05.b_48_1031

seq1  GAATTCTGCTTCGGGTGGCCGAGGCGTGGGTGGCACGCCAGTAGAAACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCGGGTGGCCGAGGCGTGGGTGGCACGCCAGTAGAAACGC  50

seq1  TGCACCCCGCCCCTGAGATAGCTCGGACACCAGGCGCCGCGCTCCGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCCGCCCCTGAGATAGCTCGGACACCAGGCGCCGCGCTCCGGGCT  100

seq1  TCTCACGAGGTAGTCCGCGGGAGGGGTCGTCGCGAGCGCGCGCGGGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGAGGTAGTCCGCGGGAGGGGTCGTCGCGAGCGCGCGCGGGGTCT  150

seq1  CACGCGGCTCGGAAGCTCAGCGCGCATGCTCCATTGGCCAACTCTCCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGGCTCGGAAGCTCAGCGCGCATGCTCCATTGGCCAACTCTCCGGG  200

seq1  AGGGGCGGGAGACCCAGAGCTCAGTAGCCGGGGGGGAGGAGCGCTCGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGGGAGACCCAGAGCTCAGTAGCCGGGGGGGAGGAGCGCTCGCGC  250

seq1  AGCCGCCCCTGACGGGAGCGGGCTCCGCCGCTACTGCAGCGCTCAGCGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCCCCTGACGGGAGCGGGCTCCGCCGCTACTGCAGCGCTCAGCGCC  300

seq1  GGGCCCTGCCGGAGCCGGGACTAGCATGTGCGGCGCCTCTCGGGAGGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCCGGAGCCGGGACTAGCATGTGCGGCGCCTCTCGGGAGGCGG  350

seq1  CGGCGGCGGCGGCTCCTCTGCAGCAGCAGCGGCGGCGGCGGCAGCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCGGCGGCTCCTCTGCAGCAGCAGCGGCGGCGGCGGCAGCAGCAG  400

seq1  CGGCGGCCGCCATGGCCAAGGCCAGCGTGGAGCTCACCCGCGAGCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGGCCGCCATGGCCAAGGCCAGCGTGGAGCTCACCCGCGAGCTGCAA  450

seq1  GGTACGAGGTTGCCTTCATCTCCGGACACCGGGTCCGCGAGCATCGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGAGGTTGCCTTCATCTCCGGACACCGGGTCCGCGAGCATCGAGAC  500

seq1  CCAGTGCTTTCCTGCGGTACACCCCAGCCCGGCGCCTCCCGCCCCCTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTTCCTGCGGTACACCCCAGCCCGGCGCCTCCCGCCCCCTCAC  550

seq1  GCATCCCTCGCTCTTAGGCAGTCCCTTCCTCTGAATCTCTAGACCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTCGCTCTTAGGCAGTCCCTTCCTCTGAATCTCTAGACCCAGCT  600

seq1  TTGCTTTCCGTGGAGCATCCTTCTCTGCCCCACTCGCCTCACCCTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCGTGGAGCATCCTTCTCTGCCCCACTCGCCTCACCCTATCAG  650

seq1  AACCTTCCTGTCCCGGAGCCGCCCGTCCCGCTCTTTGGTGACAGGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCCTGTCCCGGAGCCGCCCGTCCCGCTCTTTGGTGACAGGAGCAG  700

seq1  TTCCCTGGCGCTCTTGGGGGCTGATTCTCAGCGTTCTTGACCCACCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGCGCTCTTGGGGGCTGATTCTCAGCGTTCTTGACCCACCCCTC  750

seq1  TGCAAAGCATCCAGTCTTCCCTCCGGAGAGTCCCAGCTTTCTCCCACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCATCCAGTCTTCCCTCCGGAGAGTCCCAGCTTTCTCCCACCCT  800

seq1  CGCCGGGCGGGGCCAGGCGTT-GGGAGCTGCCCCTGG-TCCTGACTGCTG  848
      ||||||||||||||||||||| ||||||||||||||| || |||||||||
seq2  CGCCGGGCGGGGCCAGGCGTTGGGGAGCTGCCCCTGGTTCTTGACTGCTG  850

seq1  CTTATCTCAACACCCTCCCTCCTCCC-GGCCCCGCCCCGGAACTGGCCCT  897
      ||||||||| |||||||||||||||| |||| |||||||||||||| |||
seq2  CTTATCTCACCACCCTCCCTCCTCCCGGGCCTCGCCCCGGAACTGGTCCT  900

seq1  AGAGAGGCCCCTAGCGCCTAGGCCAGTGGGGCATAGGAGGGGAGTCCAGG  947
      ||||| ||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AGAGAAGCCCCTAGCGCCTAGGCCA-TGGGGCATAGGAGGGGAGT-CAGG  948

seq1  CAGAGGCCCCGACTGAAGCTAAAACCAAAAGCTAGGTTT  986
      ||||||||||||||| |||||||  | ||||||||||||
seq2  CAGAGGCCCCGACTG-AGCTAAA--CCAAAGCTAGGTTT  984

seq1: chr14_56182430_56183552
seq2: B6Ng01-028P05.g_68_1169 (reverse)

seq1  AACCTTGAGTGTGTTAGCAGCCTGCATCCCAGTGCTGTGGGCTGTCTGCC  50
      ||||||||  |||||||||| |||||||||| |||||||||||||||| |
seq2  AACCTTGA--GTGTTAGCAG-CTGCATCCCAATGCTGTGGGCTGTCTG-C  46

seq1  CTCGGAGGAGGGGGCTGGGTGTGGTTACAGTGGCTCTCCAATTGTGCTAG  100
      ||| || || |||||| |  |||| ||||   ||||||||||||||||||
seq2  CTC-GAAGAAGGGGCTAG--GTGGGTACA--TGCTCTCCAATTGTGCTAG  91

seq1  CAATATTCCCCAATCCCTTCCATTTAGAGAGAACGGGGCCTCTGCCACCG  150
      | ||||  ||| ||||  ||   ||||||||||| |||||||||||||||
seq2  C-ATAT--CCCCATCC--TC--ATTAGAGAGAAC-GGGCCTCTGCCACCG  133

seq1  GGGAAGCTTCTCCCTTGGAGAACAGTCTCGAGTGATGTCTCAGTGAGTAC  200
      ||||||| |||||  | |||||||||||||||||||||||||||||||||
seq2  GGGAAGC-TCTCC--TTGAGAACAGTCTCGAGTGATGTCTCAGTGAGTAC  180

seq1  GGGGTTTGGTGGAGAGACTCTAGGGGCCAGCTAGACCTGTGTCCTATACT  250
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -GGGTTTGGTGGAGAGACTCTAGGAGCCAGCTAGACCTGTGTCCTATACT  229

seq1  TGGAAGGGTGCAAGTTAAAAGGTTTCTCAGAATACCAAGGCTAGTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGTGCAAGTTAAAAGGTTTCTCAGAATACCAAGGCTAGTTTGAA  279

seq1  GGGGGCTGGAGCTGCGAGAGTAATCAAACTAGGGAAGTATAAAGGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGGAGCTGCGAGAGTAATCAAACTAGGGAAGTATAAAGGATGAC  329

seq1  AGAACAGACACGGGAATTATATACAAGGCCAAAGGATATGGCTGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGACACGGGAATTATATACAAGGCCAAAGGATATGGCTGCATTCT  379

seq1  ATTGTGCTGAGTTCCTCTCACTCAGCACTCCCTGGCCTCCCTCTCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTGAGTTCCTCTCACTCAGCACTCCCTGGCCTCCCTCTCTCTCC  429

seq1  CCTTCTCTAGCTTCTTGCCCAATGATCTAAGCTTCACTGATACCTACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTAGCTTCTTGCCCAATGATCTAAGCTTCACTGATACCTACTCT  479

seq1  CAGAAGGCTTTCTGCGGCATCTACAGCAAAGATGGTCAAATCTTCATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTTTCTGCGGCATCTACAGCAAAGATGGTCAAATCTTCATGTC  529

seq1  TGCTTGCCAAGGTACTAGACCCCAGACTTACTAGCTTCCTTAACCTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCAAGGTACTAGACCCCAGACTTACTAGCTTCCTTAACCTAAAA  579

seq1  ATATACTTCCAACTAGACTGGAAAGCCTCAGACCCAGGAATCTCAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTCCAACTAGACTGGAAAGCCTCAGACCCAGGAATCTCAAAACC  629

seq1  TGACTTAGAGATGTTTAGCCTTGAGATGGTGTACTGAGGGAGACCTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAGAGATGTTTAGCCTTGAGATGGTGTACTGAGGGAGACCTCAGA  679

seq1  GACATCAAGCAAAAGAGGTCTGATGGAGACGACTACAAAGAAAATGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAGCAAAAGAGGTCTGATGGAGACGACTACAAAGAAAATGGCCC  729

seq1  ATAATTTTGCCTGATACCCTCTCTGCAGATCAGACGATCCGACTGTACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTGCCTGATACCCTCTCTGCAGATCAGACGATCCGACTGTACGA  779

seq1  CTGTCGCTATGGCCGATTCCACAAATTCAAAAGCATCAAGGCTCGGGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCTATGGCCGATTCCACAAATTCAAAAGCATCAAGGCTCGGGATG  829

seq1  TAGGCTGGAGTGTCCTGGACGTGGCCTTCACCCCTGATGGAAACCACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGAGTGTCCTGGACGTGGCCTTCACCCCTGATGGAAACCACTTC  879

seq1  CTGTACTCCAGCTGGTCTGACTACAGTGAGTGTGGACCAGACCTCTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCCAGCTGGTCTGACTACAGTGAGTGTGGACCAGACCTCTGCAG  929

seq1  TGTCTTCAGCTTTGGACCTCAGAACCCAGCCCCTGTGTGTTCTTCTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGCTTTGGACCTCAGAACCCAGCCCCTGTGTGTTCTTCTCTTC  979

seq1  TGAGATAAGCTAGCATGCTGTGTCCTCAGAAAATCACTCCCCAGCTGCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGCTAGCATGCTGTGTCCTCAGAAAATCACTCCCCAGCTGCTC  1029

seq1  GGACATCTCTGCCATTTGCCTTCTCCCTCCTTAGTTTTACTTCCATTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTCTGCCATTTGCCTTCTCCCTCCTTAGTTTTACTTCCATTCTC  1079

seq1  TTTCCCGCAATCCTAAAGAATTC  1123
      |||||||||||||||||||||||
seq2  TTTCCCGCAATCCTAAAGAATTC  1102