BAC Information

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BAC

Clone NameB6Ng01-029G05
Chromosome14 (Build37)
Map Location 109,703,153 - 109,818,864
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G05.bB6Ng01-029G05.g
ACCDH859602DH859603
length1,1691,087
definitionDH859602|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G05, 5' end.DH859603|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,703,153 - 109,704,351)(109,817,759 - 109,818,864)
sequence
gaattctttttttttgcagatattatcttttattagctgcatttttcata
caacatatgggttccacataagacatggaaaattgcctcattgaaatgaa
ttttttcatttttaaaaatgtaatcatttttattgtccagattttatccc
ttccaggtccaccctaatttttgcaaacataattttgtagtatcaggaaa
catacaattcagaaacaaatttagagcaatgaaaacttaccagtcctgaa
ggtttttaaaatgatattatgggaggcacaacagtgatgtagttctaaaa
ttacataggagatctagcatataaacaataataaagggattaaaatattg
attatttacaaaactggtaatattgagtaagtaaactttatgaaaagagt
gaaaattgtcaaggaaatgtttaatcaattttcagttgctcaaaaaaaac
aaatccaaataatcaaaaataacagacatactgaaatctaagtttttaat
ctttttttgttgttgttgttcatacaaatacataaaaaaatgtttaaagt
ctagtcaaagatttgatcctacttataaaaggactttttttttccgtaaa
taatcataatgaaatttggtaggaagggtgtcaagtcatactgaaatgta
tctgtaataaattagtcatttattattgattttattgaatactatttttt
caagtttttcacttagaacaagcacatactactattgagctacaccctca
ggctctaaaatatactagtttagaataatcgttaaagagatctctatctg
tcttctcattgtgactaataaaatttgtcactgatgtgacgcagatttaa
ataaactgaccacgtgaacaatgatgaacatgtaatcatttgcacttaaa
acaaaacactgcgtgtatacacgtctattctcaaccattaaagagtatct
aactagaagatgtgttttatgttttgaaactcaaaaaagaaattcagatg
ccaataattgggaaactttcttcattttatttcttcttacatttgcaata
aatgggcagtattattttttacgaccctcatttctcagtatgtctctgta
gctcaggttacgttttagcttgggaatactggccttcagctttctgacat
tcttgagtattggaatgca
gaattctgcagcagatgatggtttagactagacgtaacaatacaattttc
catgtgcgacttttaagataaattctattcctaatctatgtacaccagaa
taacatttgtttataaacattgttctggtacattaccctccctgaaaagt
aaggtcctgacccactgattctgaaaaagtatcctgagtgatttcaaaac
actcatgttttaaaaggacttgtctagacactatctcatatcttaataaa
cccttggcctttatattcaaacagaggaagttaacagaaaaaagtaagtc
taaatggccaatgtctttccatagtgatggattcaaactgaagagagaaa
actaatcaaaattaatgtatcataaaaagagatctggattctatcacatc
aaaataaattggtttgattatttcagcaaaattacctcgtaattcctctt
atttagcattgtagctgaaaaaaaaaggcagcatcaatatccctcctcca
aatagtcagttatatatactaatatatataatagtctttatataaactaa
atacccatatgtgcatgtatgcctggtaatatatatctgtgtcaaacata
ttataaatagtgatccttccagatatcaaggtatattccttatcattgat
gtatatctgtcatcctggaaattacagcagaaatatattctgaaaactaa
tatctttgattcaattttctaagaaactttattaattagagcattgctga
tctgctggtttcttcctttattatatagtgctaagtacagaaaaaatgat
gtttagttctcagaaagtctccccggatctgtaacccttatatatgcagt
ttttgctttatttatttttacaaagcaatatcagccttccctccagtttc
ttttgcatttttacatttaggtccgacgcggaagaggacagtgaaatgga
atgatatttcactactataaagagtgttcatacatcagtttgaaaaagta
tccctactaaattaaagtgacttttcagcctgcttcagtcaagaagtgag
gatgagtcagagcagccacagacgaacaagggaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109703153_109704351
seq2: B6Ng01-029G05.b_43_1211

seq1  GAATTCTTTTTTTTTGCAGATATTATCTTTTATTAGCTGCATTTTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTGCAGATATTATCTTTTATTAGCTGCATTTTTCATA  50

seq1  CAACATATGGGTTCCACATAAGACATGGAAAATTGCCTCATTGAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATGGGTTCCACATAAGACATGGAAAATTGCCTCATTGAAATGAA  100

seq1  TTTTTTCATTTTTAAAAATGTAATCATTTTTATTGTCCAGATTTTATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATTTTTAAAAATGTAATCATTTTTATTGTCCAGATTTTATCCC  150

seq1  TTCCAGGTCCACCCTAATTTTTGCAAACATAATTTTGTAGTATCAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTCCACCCTAATTTTTGCAAACATAATTTTGTAGTATCAGGAAA  200

seq1  CATACAATTCAGAAACAAATTTAGAGCAATGAAAACTTACCAGTCCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTCAGAAACAAATTTAGAGCAATGAAAACTTACCAGTCCTGAA  250

seq1  GGTTTTTAAAATGATATTATGGGAGGCACAACAGTGATGTAGTTCTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAAATGATATTATGGGAGGCACAACAGTGATGTAGTTCTAAAA  300

seq1  TTACATAGGAGATCTAGCATATAAACAATAATAAAGGGATTAAAATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGGAGATCTAGCATATAAACAATAATAAAGGGATTAAAATATTG  350

seq1  ATTATTTACAAAACTGGTAATATTGAGTAAGTAAACTTTATGAAAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACAAAACTGGTAATATTGAGTAAGTAAACTTTATGAAAAGAGT  400

seq1  GAAAATTGTCAAGGAAATGTTTAATCAATTTTCAGTTGCTCAAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTCAAGGAAATGTTTAATCAATTTTCAGTTGCTCAAAAAAAAC  450

seq1  AAATCCAAATAATCAAAAATAACAGACATACTGAAATCTAAGTTTTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAATAATCAAAAATAACAGACATACTGAAATCTAAGTTTTTAAT  500

seq1  CTTTTTTTGTTGTTGTTGTTCATACAAATACATAAAAAAATGTTTAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTGTTGTTGTTGTTCATACAAATACATAAAAAAATGTTTAAAGT  550

seq1  CTAGTCAAAGATTTGATCCTACTTATAAAAGGACTTTTTTTTTCCGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAAAGATTTGATCCTACTTATAAAAGGACTTTTTTTTTCCGTAAA  600

seq1  TAATCATAATGAAATTTGGTAGGAAGGGTGTCAAGTCATACTGAAATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAATGAAATTTGGTAGGAAGGGTGTCAAGTCATACTGAAATGTA  650

seq1  TCTGTAATAAATTAGTCATTTATTATTGATTTTATTGAATACTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATAAATTAGTCATTTATTATTGATTTTATTGAATACTATTTTTT  700

seq1  CAAGTTTTTCACTTAGAACAAGCACATACTACTATTGAGCTACACCCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTTCACTTAGAACAAGCACATACTACTATTGAGCTACACCCTCA  750

seq1  GGCTCTAAAATATACTAGTTTAGAATAATCGTTAAAGAGATCTCTATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAAAATATACTAGTTTAGAATAATCGTTAAAGAGATCTCTATCTG  800

seq1  TCTTCTCATTGTGACTAATAAAATTTGTCACTGATGTGACGCAGGATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTCTCATTGTGACTAATAAAATTTGTCACTGATGTGACGCA-GATTTA  849

seq1  AATAAACTGACCACGTGAACAATGATGAACATGTAATCATTTGCACTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTGACCACGTGAACAATGATGAACATGTAATCATTTGCACTTAA  899

seq1  AACAAAAACACTGCGTGTATTACACGTCTATTCTTCAACCATTAAAGAGT  950
      ||| ||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AAC-AAAACACTGCGTGTA-TACACGTCTATTC-TCAACCATTAAAGAGT  946

seq1  ATCTAACTAGAAGAATGTGTTTTTATGTTTTTGAAAACTCAAAAAAGAAA  1000
      ||||||||||||| ||||| |||||||||||   ||||||||||||||||
seq2  ATCTAACTAGAAG-ATGTG-TTTTATGTTTT--GAAACTCAAAAAAGAAA  992

seq1  ATCAAAGATGCCAATTAAATGGGGAAACTTTC-TCATTTCTAATTTCTTC  1049
       ||  ||||||||||  ||| ||||||||||| |||||  | ||||||||
seq2  TTC--AGATGCCAAT--AATTGGGAAACTTTCTTCATT--TTATTTCTTC  1036

seq1  TTACATTTGCAATAAAATGGCAGTATTATTTTTTTTAACGACTCTCATTT  1099
      ||||||||||||||||  ||||||||||||||||   ||||| |||||||
seq2  TTACATTTGCAATAAATGGGCAGTATTATTTTTT---ACGACCCTCATTT  1083

seq1  TCTTCAAGGTAATGTCTCATGTAGCTCAGGTTTACGTTTTTAGCTTGGGA  1149
         |||  || ||||||| ||||||||||| ||||| |||||||||||||
seq2  --CTCA--GT-ATGTCTC-TGTAGCTCAGG-TTACG-TTTTAGCTTGGGA  1125

seq1  TAACCTGCACTTCAAGTCTTTCTGACTTTCCCTTGAGTTATTGAAATGCA  1199
       |  |||  |||||   ||||||||| ||  |||||| ||||| ||||||
seq2  -ATACTGGCCTTCA--GCTTTCTGACATT--CTTGAG-TATTGGAATGCA  1169

seq1: chr14_109817759_109818864
seq2: B6Ng01-029G05.g_68_1154 (reverse)

seq1  CCTTTCCCCTTGTTCCTGTCTGTGGCTTGCTTCTGACTCATTCCTTCACT  50
      ||||| |||||||||  ||||||||| ||| ||||||||||  | |||| 
seq2  CCTTT-CCCTTGTTC--GTCTGTGGC-TGC-TCTGACTCAT--CCTCAC-  42

seq1  TTCTGTGACTGAAGCAGGCTTGAAAAGTCACTTTAATTTAGTTAGGGATA  100
      |||| |||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TTCT-TGACTGAAGCAGGC-TGAAAAGTCACTTTAATTTAG-TAGGGATA  89

seq1  CTTTTTTTCAAACTGATGTAATGAACACTTCTTTATAGTTAGTTGAAATT  150
      |  |||||||||||||||| |||||||| ||||||||| ||| ||||| |
seq2  C--TTTTTCAAACTGATGT-ATGAACAC-TCTTTATAG-TAG-TGAAA-T  132

seq1  ATCATTCCATTTCACTGTCCTTCTTTCCGCGTCGGACCTAAATGTAAAAA  200
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  ATCATTCCATTTCACTGTCCT--CTTCCGCGTCGGACCTAAATGTAAAAA  180

seq1  TGCAAAAGAAACTGGAGGGAAGGCTGATATTGCTTTGTAAAAATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGAAACTGGAGGGAAGGCTGATATTGCTTTGTAAAAATAAATAA  230

seq1  AGCAAAAACTGCATATATAAGGGTTACAGATCCGGGGAGACTTTCTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAACTGCATATATAAGGGTTACAGATCCGGGGAGACTTTCTGAGA  280

seq1  ACTAAACATCATTTTTTCTGTACTTAGCACTATATAATAAAGGAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACATCATTTTTTCTGTACTTAGCACTATATAATAAAGGAAGAAAC  330

seq1  CAGCAGATCAGCAATGCTCTAATTAATAAAGTTTCTTAGAAAATTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATCAGCAATGCTCTAATTAATAAAGTTTCTTAGAAAATTGAATC  380

seq1  AAAGATATTAG-TTTCAGAATATATTTCTGCTGTAATTTCCAGGATGACA  449
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTAGTTTTCAGAATATATTTCTGCTGTAATTTCCAGGATGACA  430

seq1  GATATACATCAATGATAAGGAATATACCTTGATATCTGGAAGGATCACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATCAATGATAAGGAATATACCTTGATATCTGGAAGGATCACTA  480

seq1  TTTATAATATGTTTGACACAGATATATATTACCAGGCATACATGCACATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATGTTTGACACAGATATATATTACCAGGCATACATGCACATA  530

seq1  TGGGTATTTAGTTTATATAAAGACTATTATATATATTAGTATATATAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATTTAGTTTATATAAAGACTATTATATATATTAGTATATATAACT  580

seq1  GACTATTTGGAGGAGGGATATTGATGCTGCCTTTTTTTTTCAGCTACAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTGGAGGAGGGATATTGATGCTGCCTTTTTTTTTCAGCTACAAT  630

seq1  GCTAAATAAGAGGAATTACGAGGTAATTTTGCTGAAATAATCAAACCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATAAGAGGAATTACGAGGTAATTTTGCTGAAATAATCAAACCAAT  680

seq1  TTATTTTGATGTGATAGAATCCAGATCTCTTTTTATGATACATTAATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATGTGATAGAATCCAGATCTCTTTTTATGATACATTAATTTT  730

seq1  GATTAGTTTTCTCTCTTCAGTTTGAATCCATCACTATGGAAAGACATTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTTCTCTCTTCAGTTTGAATCCATCACTATGGAAAGACATTGG  780

seq1  CCATTTAGACTTACTTTTTTCTGTTAACTTCCTCTGTTTGAATATAAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGACTTACTTTTTTCTGTTAACTTCCTCTGTTTGAATATAAAGG  830

seq1  CCAAGGGTTTATTAAGATATGAGATAGTGTCTAGACAAGTCCTTTTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGTTTATTAAGATATGAGATAGTGTCTAGACAAGTCCTTTTAAAA  880

seq1  CATGAGTGTTTTGAAATCACTCAGGATACTTTTTCAGAATCAGTGGGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTTTTGAAATCACTCAGGATACTTTTTCAGAATCAGTGGGTCA  930

seq1  GGACCTTACTTTTCAGGGAGGGTAATGTACCAGAACAATGTTTATAAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTACTTTTCAGGGAGGGTAATGTACCAGAACAATGTTTATAAACA  980

seq1  AATGTTATTCTGGTGTACATAGATTAGGAATAGAATTTATCTTAAAAGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTCTGGTGTACATAGATTAGGAATAGAATTTATCTTAAAAGTC  1030

seq1  GCACATGGAAAATTGTATTGTTACGTCTAGTCTAAACCATCATCTGCTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGAAAATTGTATTGTTACGTCTAGTCTAAACCATCATCTGCTGC  1080

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1087