BAC Information

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BAC

Clone NameB6Ng01-029I05
Chromosome14 (Build37)
Map Location 101,946,053 - 102,079,934
singlet/doubletdoublet
Overlap geneTbc1d4, Commd6, Uchl3
Upstream geneEG668684, 1700110M21Rik, LOC100043421, LOC382936
Downstream geneLmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029I05.bB6Ng01-029I05.g
ACCDH859694DH859695
length1,115414
definitionDH859694|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I05, 5' end.DH859695|Mus musculus domesticus DNA, BAC clone: B6Ng01-029I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,078,816 - 102,079,934)(101,946,053 - 101,946,472)
sequence
gaattcacagagactgtatagtctcctgacagcctatagcagtttgcctt
tcatgatctgcaaacgtttatagctctttcttcctttttcatttgtttaa
taacaggtggctctctgtgtttcctttctcatcagtcatatatttgggtg
cctatatacctcaataattgcatctccacatttctcagtgcaacacacta
ctctctaaacagagatagaaatgatgcaccaggaagacatcgttgtgttt
ttattgttgttagctttctatacctgtaagtgatggtctaacaaatattt
acagaaatatctctatatactgatcaagcaacaataaccacagctaacaa
tattgtatactagatagtcaaagatactaaggctatagatttccacaaca
atcctataagatagaaattctgattatttctaaacacaaaaatataattt
ttggtcaaatattgtcctattacttatgtgtgattctagctctctttctg
aacatgtttttcagtgtgagcatatgtaacagaggaaagagtgaggaaaa
caaagtcatattcctggctaagtatgtttcaaacatctttgtatcttggc
taacattctacagtattaaaatgtggatgatatattattatactgtcttg
ttccccataatgtaacagcagttcaagtggctctaatcaaaagtgttcca
aattttggagcttgtggaattaaacaaacaaaccaacaaacaaacaaaca
aaaacctacaagtgagcacaccattttagattgtgatcttggattagggg
atgctcaaactgtatttaaacgacagtgaagctattagtcaggttcttgt
tgcctctatgtcagacttaagggtttaataagtaacttttggttttgggt
tttggttgttttttgagacaaggtttctttgtgtagctctggctgtcctg
gacttgctctttagaccaggtgggcctggatctcagggatcctgcttctg
cctctcaagtactagattaaagcatggaccacatggcaggctagtaagta
actatttgaggtttaatattggagccgtaattcctaagtttcctcctatt
tatacttgcttttat
tgtttccaaaccattctaatcattgtctaccccattcatgtcagatctat
gcaggtatggagtatgaagaataaggggatgtgtttaggaagaaaaaaaa
agcatcacttctcaaacttcccatggcccatgtagagctttggctcctgg
tgcagccctctcaacaactgaaagtgttttgatcttggcatccattacca
cactcacacagtctcattcattcacatttccagtatgatttagggccaag
tgaagaagaagaattcacaactgagtaaactttgactgtgctcagaccac
attttatgtagaccacaagaaaccatccttcggaggtgttacagtctgct
gaaatgatgggaggtcttcagcacaattgatctgaccaaagatgtgtgag
ggggtgagggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_102078816_102079934
seq2: B6Ng01-029I05.b_45_1159 (reverse)

seq1  ATAAAAGCAAGTATAAATAGAGTGAAAACTAGGAATTACTGCTCCAATAT  50
      ||||||||||||||||||||   ||||  |||||||||| ||||||||||
seq2  ATAAAAGCAAGTATAAATAGGAGGAAACTTAGGAATTACGGCTCCAATAT  50

seq1  TTAAAACTTCAAATAGTTACTTACTAGCCTGCCATGGTGGTCCATGCTTT  100
      |  |||| ||||||||||||||||||||||||||| ||||||||||| ||
seq2  T--AAACCTCAAATAGTTACTTACTAGCCTGCCAT-GTGGTCCATGC-TT  96

seq1  TAATCCTAGTACTTGGGAGGCAGAAGCAGGATCCCTGAGATCAAGGCCAA  150
      |||| |||||||||| |||||||||||||||||||||||||| ||||| |
seq2  TAAT-CTAGTACTTGAGAGGCAGAAGCAGGATCCCTGAGATCCAGGCCCA  145

seq1  CCTGGTCTAAAGAGCAAGTTCCAGGACAGCCAGAGCTACACAAAGAAACC  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGGTCTAAAGAGCAAG-TCCAGGACAGCCAGAGCTACACAAAGAAACC  194

seq1  TTGTCTCAAAAAACAACCAAAA-CCAAAACCAAAAGTTACTTATTAAACC  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGTCTCAAAAAACAACCAAAACCCAAAACCAAAAGTTACTTATTAAACC  244

seq1  CTTAAGTCTGACATAGAGGCAACAAGAACCTGACTAATAGCTTCACTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTCTGACATAGAGGCAACAAGAACCTGACTAATAGCTTCACTGTC  294

seq1  GTTTAAATACAGTTTGAGCAT-CCCTAATCCAAGATCACAATCTAAAATG  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTAAATACAGTTTGAGCATCCCCTAATCCAAGATCACAATCTAAAATG  344

seq1  GTGTGCTCACTTGTAGGTTTTTGTTTGTTTGTTTGTTGGTTTGTTTGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCACTTGTAGGTTTTTGTTTGTTTGTTTGTTGGTTTGTTTGTTT  394

seq1  AATTCCACAAGCTCCAAAATTTGGAACACTTTTGATTAGAGCCACTTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACAAGCTCCAAAATTTGGAACACTTTTGATTAGAGCCACTTGAA  444

seq1  CTGCTGTTACATTATGGGGAACAAGACAGTATAATAATATATCATCCACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTACATTATGGGGAACAAGACAGTATAATAATATATCATCCACA  494

seq1  TTTTAATACTGTAGAATGTTAGCCAAGATACAAAGATGTTTGAAACATAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACTGTAGAATGTTAGCCAAGATACAAAGATGTTTGAAACATAC  544

seq1  TTAGCCAGGAATATGACTTTGTTTTCCTCACTCTTTCCTCTGTTACATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCAGGAATATGACTTTGTTTTCCTCACTCTTTCCTCTGTTACATAT  594

seq1  GCTCACACTGAAAAACATGTTCAGAAAGAGAGCTAGAATCACACATAAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACTGAAAAACATGTTCAGAAAGAGAGCTAGAATCACACATAAGT  644

seq1  AATAGGACAATATTTGACCAAAAATTATATTTTTGTGTTTAGAAATAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGACAATATTTGACCAAAAATTATATTTTTGTGTTTAGAAATAATC  694

seq1  AGAATTTCTATCTTATAGGATTGTTGTGGAAATCTATAGCCTTAGTATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCTATCTTATAGGATTGTTGTGGAAATCTATAGCCTTAGTATCT  744

seq1  TTGACTATCTAGTATACAATATTGTTAGCTGTGGTTATTGTTGCTTGATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTATCTAGTATACAATATTGTTAGCTGTGGTTATTGTTGCTTGATC  794

seq1  AGTATATAGAGATATTTCTGTAAATATTTGTTAGACCATCACTTACAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAGAGATATTTCTGTAAATATTTGTTAGACCATCACTTACAGGT  844

seq1  ATAGAAAGCTAACAACAATAAAAACACAACGATGTCTTCCTGGTGCATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCTAACAACAATAAAAACACAACGATGTCTTCCTGGTGCATCA  894

seq1  TTTCTATCTCTGTTTAGAGAGTAGTGTGTTGCACTGAGAAATGTGGAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTCTGTTTAGAGAGTAGTGTGTTGCACTGAGAAATGTGGAGAT  944

seq1  GCAATTATTGAGGTATATAGGCACCCAAATATATGACTGATGAGAAAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTGAGGTATATAGGCACCCAAATATATGACTGATGAGAAAGGA  994

seq1  AACACAGAGAGCCACCTGTTATTAAACAAATGAAAAAGGAAGAAAGAGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAGAGCCACCTGTTATTAAACAAATGAAAAAGGAAGAAAGAGCT  1044

seq1  ATAAACGTTTGCAGATCATGAAAGGCAAACTGCTATAGGCTGTCAGGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTTTGCAGATCATGAAAGGCAAACTGCTATAGGCTGTCAGGAGA  1094

seq1  CTATACAGTCTCTGTGAATTC  1119
      |||||||||||||||||||||
seq2  CTATACAGTCTCTGTGAATTC  1115

seq1: chr14_101946053_101946472
seq2: B6Ng01-029I05.g_70_489

seq1  GAATTCTGTTTCCAAACCATTCTAATCATTGTCTACCCCATTCATGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTCCAAACCATTCTAATCATTGTCTACCCCATTCATGTCAG  50

seq1  ATCTATGCAGGTATGGAGTATGAAGAATAAGGGGATGTGTTTAGGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGCAGGTATGGAGTATGAAGAATAAGGGGATGTGTTTAGGAAGAA  100

seq1  AAAAAAAGCATCACTTCTCAAACTTCCCATGGCCCATGTAGAGCTTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCATCACTTCTCAAACTTCCCATGGCCCATGTAGAGCTTTGGC  150

seq1  TCCTGGTGCAGCCCTCTCAACAACTGAAAGTGTTTTGATCTTGGCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGCAGCCCTCTCAACAACTGAAAGTGTTTTGATCTTGGCATCCA  200

seq1  TTACCACACTCACACAGTCTCATTCATTCACATTTCCAGTATGATTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACACTCACACAGTCTCATTCATTCACATTTCCAGTATGATTTAGG  250

seq1  GCCAAGTGAAGAAGAAGAATTCACAACTGAGTAAACTTTGACTGTGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGAAGAAGAAGAATTCACAACTGAGTAAACTTTGACTGTGCTCA  300

seq1  GACCACATTTTATGTAGACCACAAGAAACCATCCTTCGGAGGTGTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATTTTATGTAGACCACAAGAAACCATCCTTCGGAGGTGTTACAG  350

seq1  TCTGCTGAAATGATGGGAGGTCTTCAGCACAATTGATCTGACCAAAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGAAATGATGGGAGGTCTTCAGCACAATTGATCTGACCAAAGATG  400

seq1  TGTGAGGGGGTGAGGGTGGT  420
      ||||||||||||||||||||
seq2  TGTGAGGGGGTGAGGGTGGT  420