BAC Information

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BAC

Clone NameB6Ng01-029K20
Chromosome14 (Build37)
Map Location 103,443,919 - 103,594,378
singlet/doubletdoublet
Overlap geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1
Upstream geneLOC669278, Kctd12, LOC668699
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029K20.bB6Ng01-029K20.g
ACCDH859811DH859812
length1,053955
definitionDH859811|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K20, 5' end.DH859812|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,593,327 - 103,594,378)(103,443,919 - 103,444,876)
sequence
gaattcaaacaaacttttacaaataagctgttgttattagaagtatttgc
attttaattatctgataaaataatattacttcctgaaattttcaatatag
attatttctgatttctttcccagtatcacactaatgaaagatgtaatttt
tgtgctttgaaatctgtgattatttgttgtaaaatagtgacccatctgtt
ttctactattagcgtataagtcagaggtgaggctatcctggctctctctg
gaaatgaccaaggagaactggtgttaacagaatttgtatcactgactttg
taattatgagttccttcctttgaagtgtcaagggcaactgtgtttggttt
ttatatcattgtgtacaggtggaagtgaaagctgtacctgtttctcagaa
aaaaacatctttgcagcaagatcaaggaaagaaatgtcaaaggattcctg
gcagcccctcagcagcagcttctagcgccgacatgacttttggtgggttg
gcatccccaaagctggacgtctcgtatgagccaatgatcgtcaaggaggc
gcggtatattgccataacaatgatgaaggtgattgatttctgcttatcag
acattttcatctttcaccattgacttatgtttcagtcaagtattaaactg
gcagcatatagttttaaatgctttttcttctcctggagagactgagtcag
tttctggcaggcactgagggggtgatcccttatagaacaggttcatgcag
tcagaggttgagatgacctaaagctgaagtgcttgtctgccagaacacag
accttcaagactcaagggttttcttgggtcccttcagtttgtacaactcc
caaatattaggctatctatctctttagatttcttatttctcttggaattt
tttttatttataattactttaagatggataaaaaaataagttcagctttt
tacttctctctgaaaggcagattactacccctggaatcatgctgagtgta
gtgtcctggtgtttttaagaaagcagtgttccatattctaagtagctgaa
agc
gaattcccagccagttaacagttgagatagttaattctccggtatcaggt
tcttgcacatcttccaataatgaagtcagtagacagcaaagggaaattta
gaaaaccatatttgccacgttgaaacaattcaaagaggacagtcaagact
caaacacatcctctgagatccttgccagtggcaggatgccaaccaagatt
cagtgtcagggctgcagctctatgctctcagcagtcttcagggtacaaat
taagaaagattgtgggagttacagttgcatgtcctcaacaggcctcaggg
tgcctagcccataagttacaagtgttacagccctgtgatctcaccaggct
tcagggggacacacaaaaactgttggtaagtattacagtttgaacgctgt
taggggctttggagtgctagccaatagcaatccctggcagaacaattctg
cagagtgatcattgacaggggtaacaagcctagcatacctcctgtctctg
gcaggtcttgaaggcttgagttgcaaatctctgcaagtctctgaagcaat
gaatcttgggtagtccaagtagttgcatgaatgaattaccttctgaattc
aaaatatgaagctttgtggactgaaggaagatgagtcccccaacctgcag
ctgcagaaagagcctgtagactgctctgagcacattctctgcccgggaca
gaagcctccagtgtggcaagactcttaactagtctgtctcctctctgaaa
acttaaaggcattcttctttctcaggagaaagtctgggagccaagctcct
ggtcagacagggatccagctgagagcaggacttcatctttaggcctcttc
ttctgcaaaaaggggaacatgtgagggccaggacacaggtcagaaccaga
agacttcagagagtcagaatctgcctgctgggtgcctggttctgaagtcc
tcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103593327_103594378
seq2: B6Ng01-029K20.b_42_1094 (reverse)

seq1  GCTTTCAGCTAC-TAGAATATGG-ACACTGCTTTC-TAAAAACACCAAGA  47
      |||||||||||| |||||||||| ||||||||||| ||||||||||| ||
seq2  GCTTTCAGCTACTTAGAATATGGAACACTGCTTTCTTAAAAACACCAGGA  50

seq1  CACTACACTCAGCATGATTCCAGGGGTAGTAATTCTGCCTTTTA-AGAGA  96
      |||||||||||||||||||||||||||||||| ||||||||| | |||||
seq2  CACTACACTCAGCATGATTCCAGGGGTAGTAA-TCTGCCTTTCAGAGAGA  99

seq1  AGTAAAAAGCTGAACTTATTTTTTTAATCCATC-TAAAGGAATTATAAAA  145
      ||||||||||||||||||||||||| ||||||| ||||| ||||||||| 
seq2  AGTAAAAAGCTGAACTTATTTTTTT-ATCCATCTTAAAGTAATTATAAA-  147

seq1  TAAAAAAAAAATCCAGGAGAAATAAGAAATCTAAAGAGATAGATAGCCTA  195
        |||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  -TAAAAAAAATTCCAAGAGAAATAAGAAATCTAAAGAGATAGATAGCCTA  196

seq1  ATATTTGGGAGTTGTACAAACTGAAGGGACCCAAGAAAACCCTTGAGTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGGAGTTGTACAAACTGAAGGGACCCAAGAAAACCCTTGAGTCT  246

seq1  TGAAGGTCTGTGTTCTGGCAGACAAGCACTTCAGCTTTAGGTCATCTCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCTGTGTTCTGGCAGACAAGCACTTCAGCTTTAGGTCATCTCAA  296

seq1  CCTCTGACTGCATGAACCTGTTCTATAAGGGGTCACCCCCTCAGTGCCTG  345
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTGACTGCATGAACCTGTTCTATAAGGGATCACCCCCTCAGTGCCTG  346

seq1  CCAGAAACTGACTCAGTCTCTCCAGGAGAAGAAAAAGCATTTAAAACTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTGACTCAGTCTCTCCAGGAGAAGAAAAAGCATTTAAAACTAT  396

seq1  ATGCTGCCAGTTTAATACTTGACTGAAACATAAGTCAATGGTGAAAGATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCAGTTTAATACTTGACTGAAACATAAGTCAATGGTGAAAGATG  446

seq1  AAAATGTCTGATAAGCAGAAATCAATCACCTTCATCATTGTTATGGCAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTGATAAGCAGAAATCAATCACCTTCATCATTGTTATGGCAAT  496

seq1  ATACCGCGCCTCCTTGACGATCATTGGCTCATACGAGACGTCCAGCTTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGCGCCTCCTTGACGATCATTGGCTCATACGAGACGTCCAGCTTTG  546

seq1  GGGATGCCAACCCACCAAAAGTCATGTCGGCGCTAGAAGCTGCTGCTGAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCCAACCCACCAAAAGTCATGTCGGCGCTAGAAGCTGCTGCTGAG  596

seq1  GGGCTGCCAGGAATCCTTTGACATTTCTTTCCTTGATCTTGCTGCAAAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCAGGAATCCTTTGACATTTCTTTCCTTGATCTTGCTGCAAAGA  646

seq1  TGTTTTTTTCTGAGAAACAGGTACAGCTTTCACTTCCACCTGTACACAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTCTGAGAAACAGGTACAGCTTTCACTTCCACCTGTACACAAT  696

seq1  GATATAAAAACCAAACACAGTTGCCCTTGACACTTCAAAGGAAGGAACTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAAACCAAACACAGTTGCCCTTGACACTTCAAAGGAAGGAACTC  746

seq1  ATAATTACAAAGTCAGTGATACAAATTCTGTTAACACCAGTTCTCCTTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACAAAGTCAGTGATACAAATTCTGTTAACACCAGTTCTCCTTGG  796

seq1  TCATTTCCAGAGAGAGCCAGGATAGCCTCACCTCTGACTTATACGCTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCAGAGAGAGCCAGGATAGCCTCACCTCTGACTTATACGCTAAT  846

seq1  AGTAGAAAACAGATGGGTCACTATTTTACAACAAATAATCACAGATTTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAACAGATGGGTCACTATTTTACAACAAATAATCACAGATTTCA  896

seq1  AAGCACAAAAATTACATCTTTCATTAGTGTGATACTGGGAAAGAAATCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAAAATTACATCTTTCATTAGTGTGATACTGGGAAAGAAATCAG  946

seq1  AAATAATCTATATTGAAAATTTCAGGAAGTAATATTATTTTATCAGATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTATATTGAAAATTTCAGGAAGTAATATTATTTTATCAGATAA  996

seq1  TTAAAATGCAAATACTTCTAATAACAACAGCTTATTTGTAAAAGTTTGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGCAAATACTTCTAATAACAACAGCTTATTTGTAAAAGTTTGTT  1046

seq1  TGAATTC  1052
      |||||||
seq2  TGAATTC  1053

seq1: chr14_103443919_103444876
seq2: B6Ng01-029K20.g_66_1020

seq1  GAATTCCCAGCCAGTTAACAGTTGAGATAGTTAATTCTCCGGTATCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCCAGTTAACAGTTGAGATAGTTAATTCTCCGGTATCAGGT  50

seq1  TCTTGCACATCTTCCAATAATGAAGTCAGTAGACAGCAAAGGGAAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACATCTTCCAATAATGAAGTCAGTAGACAGCAAAGGGAAATTTA  100

seq1  GAAAACCATATTTGCCACGTTGAAACAATTCAAAGAGGACAGTCAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCATATTTGCCACGTTGAAACAATTCAAAGAGGACAGTCAAGACT  150

seq1  CAAACACATCCTCTGAGATCCTTGCCAGTGGCAGGATGCCAACCAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACATCCTCTGAGATCCTTGCCAGTGGCAGGATGCCAACCAAGATT  200

seq1  CAGTGTCAGGGCTGCAGCTCTATGCTCTCAGCAGTCTTCAGGGTACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGGCTGCAGCTCTATGCTCTCAGCAGTCTTCAGGGTACAAAT  250

seq1  TAAGAAAGATTGTGGGAGTTACAGTTGCATGTCCTCAACAGGCCTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAGATTGTGGGAGTTACAGTTGCATGTCCTCAACAGGCCTCAGGG  300

seq1  TGCCTAGCCCATAAGTTACAAGTGTTACAGCCCTGTGATCTCACCAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGCCCATAAGTTACAAGTGTTACAGCCCTGTGATCTCACCAGGCT  350

seq1  TCAGGGGGACACACAAAAACTGTTGGTAAGTATTACAGTTTGAACGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGACACACAAAAACTGTTGGTAAGTATTACAGTTTGAACGCTGT  400

seq1  TAGGGGCTTTGGAGTGCTAGCCAATAGCAATCCCTGGCAGAACAATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTTTGGAGTGCTAGCCAATAGCAATCCCTGGCAGAACAATTCTG  450

seq1  CAGAGTGATCATTGACAGGGGTAACAAGCCTAGCATACCTCCTGTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGATCATTGACAGGGGTAACAAGCCTAGCATACCTCCTGTCTCTG  500

seq1  GCAGGTCTTGAAGGCTTGAGTTGCAAATCTCTGCAAGTCTCTGAAGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTCTTGAAGGCTTGAGTTGCAAATCTCTGCAAGTCTCTGAAGCAAT  550

seq1  GAATCTTGGGTAGTCCAAGTAGTTGCATGAATGAATTACCTTCTGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGGGTAGTCCAAGTAGTTGCATGAATGAATTACCTTCTGAATTC  600

seq1  AAAATATGAAGCTTTGTGGACTGAAGGAAGATGAGTCCCCCAACCTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAAGCTTTGTGGACTGAAGGAAGATGAGTCCCCCAACCTGCAG  650

seq1  CTGCAGAAAGAGCCTGTAGACTGCTCTGAGCACATTCTCTGCCCGGGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAAGAGCCTGTAGACTGCTCTGAGCACATTCTCTGCCCGGGACA  700

seq1  GAAGCCTCCAGTGTGGCAAGACTCTTAACTAGTCTGTCTCCTCTCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCCAGTGTGGCAAGACTCTTAACTAGTCTGTCTCCTCTCTGAAA  750

seq1  ACTTAAAGGCATTCTTCTTTCTCAGGAGAAAGTCTGGGAGCCAAGCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGCATTCTTCTTTCTCAGGAGAAAGTCTGGGAGCCAAGCTCCT  800

seq1  GGTCAGACAGGGATCCAGCTGAGAGCAGGACTTCATCTTTAGGCCTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACAGGGATCCAGCTGAGAGCAGGACTTCATCTTTAGGCCTCTTC  850

seq1  TTCTGCAAAAAAGGGGAACATGTGAGGGCCAGGACACAGGTCAGAACCAG  900
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGC-AAAAAGGGGAACATGTGAGGGCCAGGACACAGGTCAGAACCAG  899

seq1  AAGACTTCAGAGAGTCAGAATCCTGCCTGCCTGGGTGCCTGGTTCTGAAG  950
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AAGACTTCAGAGAGTCAGAAT-CTGCCTG-CTGGGTGCCTGGTTCTGAAG  947

seq1  TCCTCCTC  958
      ||||||||
seq2  TCCTCCTC  955