BAC Information

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BAC

Clone NameB6Ng01-030F02
Chromosome17 (Build37)14 (Build37)
Map Location 79,097,952 - 79,098,48523,067,167 - 23,067,235
singlet/doubletsingletsinglet
Overlap geneStrn
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F02.bB6Ng01-030F02.g
ACCDH860262DH860263
length87897
definitionDH860262|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F02, 5' end.DH860263|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,097,952 - 79,098,485)(23,067,167 - 23,067,235)
sequence
gaattctgcttactggcttgttccatttcgcttgctctttcttcttcatt
taaaaaaaaattatttatttttatgtttatggttatttttcatgcatgag
tgtttgtgtatcacatgtatgcctagtatctatagaggccagtagaggat
tttgggttccctgggactggggtttcagacagttgtgagcttccatgtgg
gtgctaggaattgaacccttggcctctggaagagcagcgagcattcttaa
ctgagccatctttctagcaccttcatttgctttcctatacagtgcaggac
tatttgcccaggagtagcactgtccacagtgtgctgagctgtccattaat
cattaatcaagaaaatattcacagacaggcccacaggccaatctgatgga
ggcaataccttagttgtggtttcctcttccctagataacttgagttgtgt
caagttgacaaaaacaaacagcacagtgtctagacccagagacttaaaac
taagtcattgctgtagagttacagttcagatctctccagtctgaatctaa
agcctgctctctttacaatttaccatgccatttgttacctataagagtag
aactgaaacataccaatactgaagtaaacagaaatgtgtgtgtgcatata
aactataaaaatacagcgaggtgctcagtgctgtggtacaaatgtataca
tggtctatagggaggtcggaaagacagaagcagctgtagtgcctctgcaa
gtggctgagcagcatcgtatggataagacgcctcaccgtgagtcaggcac
acgtagaaagcagagggaacacattggaaccaagcagtgtggctcagtca
tttgtagtcacttctcgtgggggggtgt
tctaaagatcctccctgctccagtgcctaggaaagtaggttttcttttat
ttgttttgttttgttttgttttgttttgttttggtttggtttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79097952_79098485
seq2: B6Ng01-030F02.b_392_918 (reverse)

seq1  ACACCCCCCCACA-CCCCCCACGAG-AGTGACTACAAATGACTGAG-CAC  47
                ||| ||||||||||| |||||||||||||||||||| |||
seq2  ----------ACACCCCCCCACGAGAAGTGACTACAAATGACTGAGCCAC  40

seq1  ACTGCTTGGTTCCAATGTGTTCCCTCTGCTTTCTACGTGTGCCTGACTCA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTGGTTCCAATGTGTTCCCTCTGCTTTCTACGTGTGCCTGACTCA  90

seq1  CGGTGAGGCGTCTTATCCATACGATGCTGCTCAGCCACTTGCAGAGGCAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGGCGTCTTATCCATACGATGCTGCTCAGCCACTTGCAGAGGCAC  140

seq1  TACAGCTGCTTCTGTCTTTCCGACCTCCCTATAGACCATGTATACATTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGCTTCTGTCTTTCCGACCTCCCTATAGACCATGTATACATTTG  190

seq1  TACCACAGCACTGAGCACCTCGCTGTATTTTTATAGTTTATATGCACACA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGCACTGAGCACCTCGCTGTATTTTTATAGTTTATATGCACACA  240

seq1  CACATTTCTGTTTACTTCAGTATTGGTATGTTTCAGTTCTACTCTTATAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTGTTTACTTCAGTATTGGTATGTTTCAGTTCTACTCTTATAG  290

seq1  GTAACAAATGGCATGGTAAATTGTAAAGAGAGCAGGCTTTAGATTCAGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAATGGCATGGTAAATTGTAAAGAGAGCAGGCTTTAGATTCAGAC  340

seq1  TGGAGAGATCTGAACTGTAACTCTACAGCAATGACTTAGTTTTAAGTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGATCTGAACTGTAACTCTACAGCAATGACTTAGTTTTAAGTCTC  390

seq1  TGGGTCTAGACACTGTGCTGTTTGTTTTTGTCAACTTGACACAACTCAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTAGACACTGTGCTGTTTGTTTTTGTCAACTTGACACAACTCAAG  440

seq1  TTATCTAGGGAAGAGGAAACCACAACTAAGGTATTGCCTCCATCAGATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGGGAAGAGGAAACCACAACTAAGGTATTGCCTCCATCAGATTG  490

seq1  GCCTGTGGGCCTGTCTGTGAATATTTTCTTGATTAAT  534
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGGCCTGTCTGTGAATATTTTCTTGATTAAT  527

seq1: chr14_23067167_23067235
seq2: B6Ng01-030F02.g_127_170 (reverse)

seq1  AAACCAAAACCAAACCAAAACAAAACAAAACCCCCCCAAAAAACCCAACG  50
      ||||| |||||||||||||||||||||||||        ||||  |||  
seq2  AAACC-AAACCAAACCAAAACAAAACAAAAC--------AAAA--CAA--  37

seq1  AACAAAAACAAAAACAAAA  69
      |||||||            
seq2  AACAAAA------------  44