BAC Information

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BAC

Clone NameB6Ng01-030G13
Chromosome14 (Build37)
Map Location 43,916,526 - 44,059,006
singlet/doubletdoublet
Overlap geneLOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Upstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471
Downstream geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030G13.bB6Ng01-030G13.g
ACCDH860329DH860330
length1,1281,065
definitionDH860329|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G13, 5' end.DH860330|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,057,855 - 44,059,006)(43,916,526 - 43,917,606)
sequence
gaattctttgcaaacttctatgatagtgaaagactgtggaaatccctagg
aattggagtatgaagtgagacttagtacaaggtctatgggcacggaaatc
aaatgttgaaaaagcttagaagacagataggacaaaatatattgagtcca
actgatgctgggagtcaattaacaattcagagaacattggctctgaacaa
tggcctccctgctcctttccttccaagtaggataggagcaggaggagagg
tacttggacaggtattgaagttagcctttgctaaaaatgagtaataaatc
aaattttcacagttggtgcattcatacaggaaaggaggagatgactcagt
cactaaaggtcctgagaggccacactgagttggcattcatgaactctcca
ttattcagtaagaacaactgcacttgattaagatgcttacatgaccttta
tatccagcacttcactctctgctactacatgtcatggtggaggattttct
cagggttgtctcttctgagctgtcaggacactggcaggcttttcctctca
cctattttggtctcaacaaagtctctgctcaccagccagaaaaccacttc
ttgaaattttagcctcattgtgaggtagcaagagagtggaaacaatctat
gacattacagatgaggcctttggaaggcaatgtgggttagataatgtcat
cagagtaaattcttgccttttgcaaaagccttctaaacaaatgactccct
aggatatttcccaaccagagagcaggacagcatgctgcttatgtatttgc
tatatggtgtgtgggagacaggcagctgattttagtagtcttaagtagcc
agggctggtcttgtacacaacccactacgtggtcaaggttgactttggga
tcccaatagccaacttaaatatttgaagttggataattaagaccactttc
ttcatttctaaattataagtgcttcagtctaaaatagtttacctttacct
tctctaaatagatgtagtaatgatcatgggtacaatgatttatttttcct
acaagaatgttggttcctttctggacctaatgggttactggaacatgatg
ggatcttctgcaaaattcccttctctaa
gaattcacatgatccttggggcctgtgtcatggagtagcttcagtgactg
gaagaatgtgttcgatttatttcctatactcaaagcaggcagaaaaggat
gaaagtcctccatgtaatatcaaatatatccagaagagggtgctagatcc
tcagtacccaaagtatccagaagatgggataagacagattgccatccagt
accaaagtcatccagagagcatcttaagatcaaagtcagctggtgttgta
gccctagcagcaaggaggaggaggctgcatcctgatgccctcttctgaca
gtcagaatgaaattaaggaactcttgcacagcagctgcagccttgccaag
tcctgctctctgtcaaacaaactgcttcccagaagctccaagctcctgat
tcccattactggaagtccaagctcaagcctaccttctctaggaagctccc
tctttcatgcccaggattcacagtgacttccccaggaccattaattcttg
ctctttaacactaagaccaaaggccatcttgtggctgcctctttctggtc
tctgtatgttcattgttctctcctccaagaggcctgctcagttttgtcaa
catgtctaagggtgaaccataaaggtagttaatgaatgctccaagagcag
ttgggagtcaccataacatagtaacatcacagaaaatgccagggctctcc
agattacaacacaacatctaaggaagggacttctgatgtcacacaggtca
gctcgtaccattatgctcagtacctcacccaaatttacctgaagtcaaag
tgccttttccagagagtggggatagattgccttttggtactcaaatataa
aagttggctatcaatcaccttccatgacaaatgtttcaagaagagatcct
ttgattccccatgcaatttacattgaaatacccagcttcagaataggaca
ctaggcaatactcaccttctgagaaggtgtgaagatccccttgcagtact
gaacttcagagaagtcaataccgtcagccagtttctatgttggatatcga
cctggaaagatggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44057855_44059006
seq2: B6Ng01-030G13.b_44_1171 (reverse)

seq1  TTAGAGAAGGAACTTTGACAGAAGATTTCCATCATTGTTTCCATTTAACC  50
      |||||||||| | |||  ||||||| | |||||||   |||||  |||||
seq2  TTAGAGAAGGGAATTTTGCAGAAGA-TCCCATCAT--GTTCCA-GTAACC  46

seq1  ATTTAGGTCCAAGAAAAAGAAAGCAACATATTTCTTGGTGGGAAAAATTA  100
        ||||||||   | |||| || |||||   ||||| || ||||||| ||
seq2  CATTAGGTCC---AGAAAGGAACCAACA---TTCTT-GTAGGAAAAA-TA  88

seq1  AATCATTGTTACACAATGATATCATTACTTACATACTAATTTAAGAGAAG  150
      |||||||| ||| | |||  |||||||| ||||| |||  || |||||||
seq2  AATCATTG-TAC-CCATG--ATCATTAC-TACAT-CTA--TTTAGAGAAG  130

seq1  GTAAAGGTAAACTATTTTAGACTTGAAGCACTTACTAATTTTAGAAATGA  200
      |||||||||||||||||||||| ||||||||||| ||| |||||||||||
seq2  GTAAAGGTAAACTATTTTAGAC-TGAAGCACTTA-TAA-TTTAGAAATGA  177

seq1  AGAAGTGGGTCTTAATTATTCATACTCAAATATTTAGGTTGGCTATTGGG  250
      ||||   |||||||||||| ||   ||||||||||| |||||||||||||
seq2  AGAAAGTGGTCTTAATTATCCAACTTCAAATATTTAAGTTGGCTATTGGG  227

seq1  AT-CCAAAGTCAACCTTGACCACGTTAGTGGGTTGTGTACAAGACCAGCC  299
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCCCAAAGTCAACCTTGACCACG-TAGTGGGTTGTGTACAAGACCAGCC  276

seq1  CTGGCTACTTAAGACTATCTAAAATCAGCTGCCTGTCTCCCACACACCAT  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGGCTACTTAAGACTA-CTAAAATCAGCTGCCTGTCTCCCACACACCAT  325

seq1  ATAGCAAATACATAAGCAGCATGCTGTCCTGCTCTCTGGTTGGGAAATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATACATAAGCAGCATGCTGTCCTGCTCTCTGGTTGGGAAATAT  375

seq1  CCTAGGGAGTCATTTGTTTAGAAGGCTTTTGCAAAAGGCAAGAATTTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAGTCATTTGTTTAGAAGGCTTTTGCAAAAGGCAAGAATTTACT  425

seq1  CTGATGACATTATCTAACCCACATTGCCTTCCAAAGGCCTCATCTGTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACATTATCTAACCCACATTGCCTTCCAAAGGCCTCATCTGTAAT  475

seq1  GTCATAGATTGTTTCCACTCTCTTGCTACCTCACAATGAGGCTAAAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGATTGTTTCCACTCTCTTGCTACCTCACAATGAGGCTAAAATTT  525

seq1  CAAGAAGTGGTTTTCTGGCTGGTGAGCAGAGACTTTGTTGAGACCAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGGTTTTCTGGCTGGTGAGCAGAGACTTTGTTGAGACCAAAAT  575

seq1  AGGTGAGAGGAAAAGCCTGCCAGTGTCCTGACAGCTCAGAAGAGACAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAGGAAAAGCCTGCCAGTGTCCTGACAGCTCAGAAGAGACAACC  625

seq1  CTGAGAAAATCCTCCACCATGACATGTAGTAGCAGAGAGTGAAGTGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATCCTCCACCATGACATGTAGTAGCAGAGAGTGAAGTGCTGG  675

seq1  ATATAAAGGTCATGTAAGCATCTTAATCAAGTGCAGTTGTTCTTACTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGGTCATGTAAGCATCTTAATCAAGTGCAGTTGTTCTTACTGAA  725

seq1  TAATGGAGAGTTCATGAATGCCAACTCAGTGTGGCCTCTCAGGACCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAGAGTTCATGAATGCCAACTCAGTGTGGCCTCTCAGGACCTTTA  775

seq1  GTGACTGAGTCATCTCCTCCTTTCCTGTATGAATGCACCAACTGTGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAGTCATCTCCTCCTTTCCTGTATGAATGCACCAACTGTGAAAA  825

seq1  TTTGATTTATTACTCATTTTTAGCAAAGGCTAACTTCAATACCTGTCCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTATTACTCATTTTTAGCAAAGGCTAACTTCAATACCTGTCCAA  875

seq1  GTACCTCTCCTCCTGCTCCTATCCTACTTGGAAGGAAAGGAGCAGGGAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCTCCTCCTGCTCCTATCCTACTTGGAAGGAAAGGAGCAGGGAGG  925

seq1  CCATTGTTCAGAGCCAATGTTCTCTGAATTGTTAATTGACTCCCAGCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCAGAGCCAATGTTCTCTGAATTGTTAATTGACTCCCAGCATC  975

seq1  AGTTGGACTCAATATATTTTGTCCTATCTGTCTTCTAAGCTTTTTCAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGACTCAATATATTTTGTCCTATCTGTCTTCTAAGCTTTTTCAACA  1025

seq1  TTTGATTTCCGTGCCCATAGACCTTGTACTAAGTCTCACTTCATACTCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTCCGTGCCCATAGACCTTGTACTAAGTCTCACTTCATACTCCA  1075

seq1  ATTCCTAGGGATTTCCACAGTCTTTCACTATCATAGAAGTTTGCAAAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGGGATTTCCACAGTCTTTCACTATCATAGAAGTTTGCAAAGAA  1125

seq1  TTC  1152
      |||
seq2  TTC  1128

seq1: chr14_43916526_43917606
seq2: B6Ng01-030G13.g_69_1133

seq1  GAATTCACATGATCCTTGAGGCCTGTGTCATGGAGTAGCTTCAGTGACTA  50
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GAATTCACATGATCCTTGGGGCCTGTGTCATGGAGTAGCTTCAGTGACTG  50

seq1  GAAGAATGGGTTAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTGTTCGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100

seq1  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150

seq1  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200

seq1  ACCAAAGACATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTTGTA  250

seq1  GCCCTAGGAGCAAGGAGGAGGAATCTGCCTCCTGATGCCCTCTTCTGACA  300
      ||||||| ||||||||||||||  |||| |||||||||||||||||||||
seq2  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTTCTGACA  300

seq1  GTCAGAATGAAATTGAGGAACTCTTGCACAGCAGCTGCAGCCTTGCCAAG  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAATTAAGGAACTCTTGCACAGCAGCTGCAGCCTTGCCAAG  350

seq1  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCTGTCAAACAAACTGCTTCCCAGAAGCTCCAAGCTCCTGAT  400

seq1  TCCTATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTCTAGGAAGCTCCC  450
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCATTACTGGAAGTCCAAGCTCAAGCCTACCTTCTCTAGGAAGCTCCC  450

seq1  TCTTTCATGCCCAGGAATCACAGTGACTTCCCCTGGGCCATTAATTCTTG  500
      |||||||||||||||| |||||||||||||||| || |||||||||||||
seq2  TCTTTCATGCCCAGGATTCACAGTGACTTCCCCAGGACCATTAATTCTTG  500

seq1  CTCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTC  550

seq1  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAA  600

seq1  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTAAGGGTGAACCATAAAGGTAGTTAATGAATGCTCCAAGAGCAG  650

seq1  TT-GGAGTCACCATAACATTAGTAACATCACAGAAAATGCCAGGGCTCTC  699
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGGGAGTCACCATAACA-TAGTAACATCACAGAAAATGCCAGGGCTCTC  699

seq1  CAGATTACAACACAACATCTAAGGAAGGGACTTCTGATGTCACACAGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACAACACAACATCTAAGGAAGGGACTTCTGATGTCACACAGGTC  749

seq1  AGCTTGTACCATTATGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAA  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTACCATTATGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAA  799

seq1  GTGCCTTTTCCAGAGAGT-GGGATAGATTGCCTTTTGGTACTCAAAATAT  848
      |||||||||||||||||| |||||||||||||||||||||||| ||||| 
seq2  GTGCCTTTTCCAGAGAGTGGGGATAGATTGCCTTTTGGTACTC-AAATA-  847

seq1  TAAAAGGTGGCTATCAATCACCTTCCAATGACAAATGTATCCAGAAGAGA  898
      |||||| ||||||||||||||||||| ||||||||||| || ||||||||
seq2  TAAAAGTTGGCTATCAATCACCTTCC-ATGACAAATGTTTCAAGAAGAGA  896

seq1  TCCTTTGAATCCCCATGCAAATATACA-TGAAATACCCAGCCTCCAGAAT  947
      |||||||| ||||||||| ||| |||| |||||||||||| || ||||||
seq2  TCCTTTGATTCCCCATGC-AATTTACATTGAAATACCCAG-CTTCAGAAT  944

seq1  AAGACACTAGGCAATACTCAACACATCTAGATAAAGTGTGATAGATCCCC  997
      | ||||||||||||||||||   | ||| || || |||||| ||||||||
seq2  AGGACACTAGGCAATACTCA--CCTTCT-GAGAAGGTGTGA-AGATCCCC  990

seq1  TTGCAGTACTGAAACTATCCAGAAGAGGTCAATACCCGTCCAGCCAGTTT  1047
      |||||||||||||    | ||| ||| ||||||| |||| ||||||||||
seq2  TTGCAGTACTGAA---CTTCAG-AGAAGTCAATA-CCGT-CAGCCAGTTT  1034

seq1  CTATGTTGTGATTACTGACCTGGACAGAATGGAA  1081
      |||||||| || ||  |||||||| || ||||||
seq2  CTATGTTG-GA-TATCGACCTGGAAAG-ATGGAA  1065