BAC Information

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BAC

Clone NameB6Ng01-030J08
Chromosome14 (Build37)14 (Build37)
Map Location 75,381,711 - 75,382,38999,461,978 - 99,462,276
singlet/doubletsingletsinglet
Overlap geneLOC100043169
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519
Downstream gene5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030J08.bB6Ng01-030J08.g
ACCDH860443DH860444
length681900
definitionDH860443|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J08, 5' end.DH860444|Mus musculus domesticus DNA, BAC clone: B6Ng01-030J08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,381,711 - 75,382,389)(99,461,978 - 99,462,276)
sequence
gaattcttagatcacattcatgagcaccaagatttattctttaaaaaaaa
atgaactcatcttaacaattaatcactaagcttaatttctatttcatcat
agatgggcaaacctgtgtgatcactgtggcctgcactttttagctctgaa
tccttacttcctagtcactagacaatgacacctccagccatagattcagc
cctgccctagctttgcgcatctacactggctggctctatactgatggact
caatgtgtcttacacctatgttcttgactaaagtacgaagtcacctttat
ttctcgcccagctgcaggctgcctccttaatcgtgagaactagctttgtg
tattaacccagggatgtgttcttacacaacaccctgattctagcaagcga
gtcctacttcattttctatttgcagagaggaatggaaagagagaaagagg
gagagatgggtagagcaacgggggatgatagaacaggagagaacagaaga
ggggaaggggagggtatgagatggcaggaagagaagagcccactaatctt
catcagtgtgtttgcatatggtttgtatctgcctgctctaagctggaacc
ctggttcccagtgtggcagtattaaagtggtggaactgtgatgaggtggg
ggcctagtgctttccaccatcaggtacacat
gaattctgctctggagatggtcttatatggaaatatgagttcatcaaaat
ctaggacttttcaaagactgaaacattccatcctttcagggaagtcctta
aaacagaaaaaaaaaaatctcaaaatagtttcaggaagtccctgaaactg
accagatctacccaccaccaccctgcctccaagaataaacagtaaagcct
gctgagagtcatcatcaggggaacaaagctgaaaaggaaactgggagcta
atccagctgtctggaagaagcagaggctggctgagctgcctgaagaggtt
tagacctactgagtcacttggaaggcatacgctccaatctgttgagctac
ctgtaggctgtgcagtttgcttcagattcctagctttgtgagctgtcacc
catgctgcgtttggctttggtgactcagctgtctttgagtcctttctgct
ccttacccattgtactggctggtttggggtgtcaacttgacacaggctgg
agtcatcacagagaaagaagcttcagttggggagatgcctccacgagatc
cagctgtaaggcattttctcaattagtgatcaagggggaaaggcctcttg
tgggtgggaccatctctgggctggtagtcttgggttctataagagagcaa
gctgagcaagccaggagaagcaagccagtaaaaacatccctccatggcct
ctacatcagctcctgctccctgacctgcttgagttccagtcctgacttct
tcactaatgaacagcaatgtggaaatttgtaagctgaataaatcctttcc
tccccaacttgctcttggtcatgatgtttgtgcagtaatagaaaccctga
ctaagacacccatattcctgtaaatagccccaagaaagctcattggactt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75381711_75382389
seq2: B6Ng01-030J08.b_49_729

seq1  GAATTCTTAGATCACATTCATGAGCACCAAGATTTATTCTTTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATCACATTCATGAGCACCAAGATTTATTCTTTAAAAAAAA  50

seq1  ATGAACTCATCTTAACAATTAATCACTAAGCTTAATTTCTATTTCATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCATCTTAACAATTAATCACTAAGCTTAATTTCTATTTCATCAT  100

seq1  AGATGGGCAAACCTGTGTGATCACTGTGGCCTGCACTTTTTAGCTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCAAACCTGTGTGATCACTGTGGCCTGCACTTTTTAGCTCTGAA  150

seq1  TCCTTACTTCCTAGTCACTAGACAATGACACCTCCAGCCATAGATTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTTCCTAGTCACTAGACAATGACACCTCCAGCCATAGATTCAGC  200

seq1  CCTGCCCTAGCTTTGCGCATCTACACTGGCTGGCTCTATACTGATGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTAGCTTTGCGCATCTACACTGGCTGGCTCTATACTGATGGACT  250

seq1  CAATGTGTCTTACACCTATGTTCTTGACTAAAGTACGAAGTCACCTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGTCTTACACCTATGTTCTTGACTAAAGTACGAAGTCACCTTTAT  300

seq1  TTCTCGCCCAGCTGCAGGCTGCCTCCTTAATCGTGAGAACTAGCTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCCCAGCTGCAGGCTGCCTCCTTAATCGTGAGAACTAGCTTTGTG  350

seq1  TATTAACCCAGGGATGTGTTCTTACACAACACCCTGATTCTAGCAAGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCCAGGGATGTGTTCTTACACAACACCCTGATTCTAGCAAGCGA  400

seq1  GTCCTACTTCATTTTCTATTTGCAGAGAGGAATGGAAAGAGAGAAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTTCATTTTCTATTTGCAGAGAGGAATGGAAAGAGAGAAAGAGG  450

seq1  GAGAGATGGGTAGAGCAACGGGGGATGATAGAACAGGAGAGAACAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGGTAGAGCAACGGGGGATGATAGAACAGGAGAGAACAGAAGA  500

seq1  GGGGAAGGGGAGGGTATGAGATGGCAGGAAGAGAAGAGCCCACTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGGAGGGTATGAGATGGCAGGAAGAGAAGAGCCCACTAATCTT  550

seq1  CATCAGTGTGTTTGCATATGGTTTGTATCTGCCTGCTCTAAGCTGGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGTGTTTGCATATGGTTTGTATCTGCCTGCTCTAAGCTGGAACC  600

seq1  CTGGTTCCCAGTGTGGCAGTATTAAAGTGGTGGAACTGTGATGAGGT-GG  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGTTCCCAGTGTGGCAGTATTAAAGTGGTGGAACTGTGATGAGGTGGG  650

seq1  GGCCTAGTGC-TTCCACCATCAGGTACACAT  679
      |||||||||| ||||||||||||||||||||
seq2  GGCCTAGTGCTTTCCACCATCAGGTACACAT  681

seq1: chr14_99461978_99462276
seq2: B6Ng01-030J08.g_623_920 (reverse)

seq1  CTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGT  50
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  CTTAGTCAGGGTTTCTATTACTGCACAAACATCATGACCAAG-AGCAAGT  49

seq1  TGGGGAGGAAAGGGTTTATTCGGCTTAC--ACTTCCATGCTGCTGTTCAT  98
      ||||||||||||| ||||||| ||||||  | |||||   ||||||||||
seq2  TGGGGAGGAAAGGATTTATTCAGCTTACAAATTTCCACATTGCTGTTCAT  99

seq1  CACTAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCT  148
       | | || ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAA-GAAGTCAGGACTGGAACTCAAGCAGGTCAGGGAGCAGGAGCT  148

seq1  GATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCTCCTGGCT  198
      |||| |||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GATGTAGAGGCCATGGAGGGATGTT-TTTACTGGCTTGCTTCTCCTGGCT  197

seq1  TACTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGC  248
      | |||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  TGCTCAGCTTGCTCTCTTATAGAACCCAAGACTACCAGCCCAGAGATGGT  247

seq1  ACCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  298
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACAAGAGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCT  297

seq1  T  299
      |
seq2  T  298