BAC Information

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BAC

Clone NameB6Ng01-030O22
Chromosome14 (Build37)
Map Location 56,109,248 - 56,253,460
singlet/doubletdoublet
Overlap geneBC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4
Upstream genePrmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4
Downstream geneTm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O22.bB6Ng01-030O22.g
ACCDH860691DH860692
length6731,056
definitionDH860691|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O22, 5' end.DH860692|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,109,248 - 56,109,917)(56,252,394 - 56,253,460)
sequence
gaattctccctagccctcctccctatctccaaggcctgagcttgccgctc
aagggtggttacgtctgcctgccacggagctgcttgccagctgttggggg
aggtagctcgggaactcccaggtgctactcttagcctcacacccccaggg
acggtgccaaggacgccacggggatccccgagactagactagcgagcaaa
aaaaaaaaaaaaaaaaaaaaaaaaaagaagaagaagaagaagaactaact
ccctcccgcacgttcggacaggtctttttgcagcatcgtccttgattcaa
agttccctccagggtcagcaaggacgagctggaccgttcctgagctggaa
ggagtgggagggcggggccatacaagaatgacccggggaggggtaccgaa
gcacataaacaaagaaattgaagaattctgcttcgggtggccgaggcgtg
ggtggcacgccagtagaaacgctgcaccccgcccctgagatagctcggac
accaggcgccgcgctccgggcttctcacgaggtagtccgcgggaggggtc
gtcgcgagcgcgcgcggggtctcacgcggctcggaagctcagcgcgcatg
ctccattggccaactctccgggaggggcgggagacccagagctcagtagc
cgggggggaggagcgttcgctca
gaattcagcctgtccagtggtgctgaccgagccagatcacaatgcccccc
tcctttcctcacccccagctgtcggtggtcttatggggtctgccttagga
aagaccgtgcacatacctgcattctctttctggccactccttgggcctgg
ggcattgtttgcaagggaagggtggtaaaaggtgtttctatatgaatgga
cctcctctttgtaggcattctgtgagtgtcagcttggcccagctctcagc
caccatttttcgaaaggaaggcctacaaggatggcctcagttcatgaacc
ttcttcagcacagcactcatagttcccatagccccgagaaagaggtactg
gcactgccctgttggcaggaaggagggacagaggctggatagaccacgag
accgtctcttctcccctgctcctgtacaggtgggacttctgctgctgagt
gtggtggtgtcttcccagcccgaggcattccatgcccaccagcacgagct
gcttcagcttctgaatgagacgctcagtgacgtcagctttcccggagtgc
tcttctactccctgcgcactctgactgccatcgcccgctatgtcaggccg
gatgatgtggtaagtaagacgctgcctgtatctctcggtttcgtgccctc
gctttcagaagtcttggcccaagctgctttcgagttttattccgcctccc
gttcttcctaagggttgagggcatagcgtgttagctgggcctggctggct
ccttagatggaggctttgaggaagcctccagctcctggcttctgggatga
gaccacctgcgctttatgtgattacgctcatcctgtgtcttccagtctct
tgcacggatgttggtgccaaagtcgttacgcactgaggacttctgatccc
cttagatgaggtaaggacagacggaggggtctccttttggaaggaaaatg
gagcacaagcacatgttcccctaaaggagcagtccctgtgactacttgct
tgtctgcagtaaaggcctgtgagccctgaagccctgtagaaaatgctgga
gacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56109248_56109917
seq2: B6Ng01-030O22.b_42_711

seq1  GAATTCTCCCTAGCCCTCCTCCCTATCTCCAAGGCCTGAGCTTGCCGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTAGCCCTCCTCCCTATCTCCAAGGCCTGAGCTTGCCGCTC  50

seq1  AAGGGTGGTTACGTCTGCCTGCCACGGAGCTGCTTGCCAGCTGTTGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTTACGTCTGCCTGCCACGGAGCTGCTTGCCAGCTGTTGGGGG  100

seq1  AGGTAGCTCGGGAACTCCCAGGTGCTACTCTTAGCCTCACACCCCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCTCGGGAACTCCCAGGTGCTACTCTTAGCCTCACACCCCCAGGG  150

seq1  ACGGTGCCAAGGACGCCACGGGGATCCCCGAGACTAGACTAGCGAGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGCCAAGGACGCCACGGGGATCCCCGAGACTAGACTAGCGAGCAAA  200

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAACTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGAACTAACT  250

seq1  CCCTCCCGCACGTTCGGACAGGTCTTTTTGCAGCATCGTCCTTGATTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCTCCCGCACGTTCGGACAGGTCTTTTTGCAGCATCGTCCTTGATTCAA  300

seq1  AGTTCCCTCCAGGGTCAGCAAGGACGAGCTGGACCGTTCCTGAGCTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCTCCAGGGTCAGCAAGGACGAGCTGGACCGTTCCTGAGCTGGAA  350

seq1  GGAGTGGGAGGGCGGGGCCATACAAGAATGACCCGGGGAGGGGTACCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGAGGGCGGGGCCATACAAGAATGACCCGGGGAGGGGTACCGAA  400

seq1  GCACATAAACAAAGAAATTGAAGAATTCTGCTTCGGGTGGCCGAGGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAAACAAAGAAATTGAAGAATTCTGCTTCGGGTGGCCGAGGCGTG  450

seq1  GGTGGCACGCCAGTAGAAACGCTGCACCCCGCCCCTGAGATAGCTCGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACGCCAGTAGAAACGCTGCACCCCGCCCCTGAGATAGCTCGGAC  500

seq1  ACCAGGCGCCGCGCTCCGGGCTTCTCACGAGGTAGTCCGCGGGAGGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCGCCGCGCTCCGGGCTTCTCACGAGGTAGTCCGCGGGAGGGGTC  550

seq1  GTCGCGAGCGCGCGCGGGGTCTCACGCGGCTCGGAAGCTCAGCGCGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCGAGCGCGCGCGGGGTCTCACGCGGCTCGGAAGCTCAGCGCGCATG  600

seq1  CTCCATTGGCCAACTCTCCGGGAGGGGCGGGAGACCCAGAGCTCAGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGGCCAACTCTCCGGGAGGGGCGGGAGACCCAGAGCTCAGTAGC  650

seq1  CGGGGGGGAGGAGCGCTCGC  670
      ||||||||||||||| ||||
seq2  CGGGGGGGAGGAGCGTTCGC  670

seq1: chr14_56252394_56253460
seq2: B6Ng01-030O22.g_67_1122 (reverse)

seq1  TCTGTCTCCAGCATTTCATCCAGGGCCTCCAGGGCCTCACAGGCCTTTAC  50
      ||||||||||||||||  | ||||| || ||||| |||||||||||||| 
seq2  TCTGTCTCCAGCATTTTCTACAGGG-CTTCAGGG-CTCACAGGCCTTTA-  47

seq1  CTGCAGACAGACAAGTAAGTCACAGGGTACTCGCTCCTCTAGGGGACCAT  100
      |||||||||  ||||| |||||||||| ||| |||||| ||||||| |||
seq2  CTGCAGACAAGCAAGT-AGTCACAGGG-ACT-GCTCCTTTAGGGGAACAT  94

seq1  GGTGCTTGTGCCTCCATTTTCCTTCCAAAAGGAGACCCCTCCCGTCTGTC  150
       ||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  -GTGCTTGTG-CTCCATTTTCCTTCCAAAAGGAGACCCCT-CCGTCTGTC  141

seq1  CTTACCTCATCTAAGGGGATCAG-AGTCCTCAGTGCCGTAACGACTTTGG  199
      ||||||||||||||||||||||| ||||||||||| |||||||||||| |
seq2  CTTACCTCATCTAAGGGGATCAGAAGTCCTCAGTG-CGTAACGACTTT-G  189

seq1  GCACCAACATCCGTGCAAGAGACTGGAAGACACAGGAATGAGCGTAATCA  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCACCAACATCCGTGCAAGAGACTGGAAGACACAGG-ATGAGCGTAATCA  238

seq1  CATAAAGCGCAGGTGGTCTCATCCCAGAAGCCAGGAGCTGGAGGCTTCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCGCAGGTGGTCTCATCCCAGAAGCCAGGAGCTGGAGGCTTCCT  288

seq1  CAAAGCCTCCATCTAAGGAGCCAGCCAGGCCCAGCTAACACGCTATGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTCCATCTAAGGAGCCAGCCAGGCCCAGCTAACACGCTATGCCC  338

seq1  TCAACCCTTAGGAAGAACGGGAGGCGGAATAAAACTCGAAAGCAGCTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTTAGGAAGAACGGGAGGCGGAATAAAACTCGAAAGCAGCTTGG  388

seq1  GCCAAGACTTCTGAAAGCGAGGGCACGAAACCGAGAGATACAGGCAGCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACTTCTGAAAGCGAGGGCACGAAACCGAGAGATACAGGCAGCGT  438

seq1  CTTACTTACCACATCATCCGGCCTGACATAGCGGGCGATGGCAGTCAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTACCACATCATCCGGCCTGACATAGCGGGCGATGGCAGTCAGAG  488

seq1  TGCGCAGGGAGTAGAAGAGCACTCCGGGAAAGCTGACGTCACTGAGCGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGGGAGTAGAAGAGCACTCCGGGAAAGCTGACGTCACTGAGCGTC  538

seq1  TCATTCAGAAGCTGAAGCAGCTCGTGCTGGTGGGCATGGAATGCCTCGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGAAGCTGAAGCAGCTCGTGCTGGTGGGCATGGAATGCCTCGGG  588

seq1  CTGGGAAGACACCACCACACTCAGCAGCAGAAGTCCCACCTGTACAGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACACCACCACACTCAGCAGCAGAAGTCCCACCTGTACAGGAG  638

seq1  CAGGGGAGAAGAGACGGTCTCGTGGTCTATCCAGCCTCTGTCCCTCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGAAGAGACGGTCTCGTGGTCTATCCAGCCTCTGTCCCTCCTTC  688

seq1  CTGCCAACAGGGCAGTGCCAGTACCTCTTTCTCGGGGCTATGGGAACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAACAGGGCAGTGCCAGTACCTCTTTCTCGGGGCTATGGGAACTAT  738

seq1  GAGTGCTGTGCTGAAGAAGGTTCATGAACTGAGGCCATCCTTGTAGGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGTGCTGAAGAAGGTTCATGAACTGAGGCCATCCTTGTAGGCCT  788

seq1  TCCTTTCGAAAAATGGTGGCTGAGAGCTGGGCCAAGCTGACACTCACAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCGAAAAATGGTGGCTGAGAGCTGGGCCAAGCTGACACTCACAGA  838

seq1  ATGCCTACAAAGAGGAGGTCCATTCATATAGAAACACCTTTTACCACCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACAAAGAGGAGGTCCATTCATATAGAAACACCTTTTACCACCCT  888

seq1  TCCCTTGCAAACAATGCCCCAGGCCCAAGGAGTGGCCAGAAAGAGAATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCAAACAATGCCCCAGGCCCAAGGAGTGGCCAGAAAGAGAATGC  938

seq1  AGGTATGTGCACGGTCTTTCCTAAGGCAGACCCCATAAGACCACCGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTGCACGGTCTTTCCTAAGGCAGACCCCATAAGACCACCGACAG  988

seq1  CTGGGGGTGAGGAAAGGAGGGGGGCATTGTGATCTGGCTCGGTCAGCACC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGAGGAAAGGAGGGGGGCATTGTGATCTGGCTCGGTCAGCACC  1038

seq1  ACTGGACAGGCTGAATTC  1067
      ||||||||||||||||||
seq2  ACTGGACAGGCTGAATTC  1056