BAC Information

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BAC

Clone NameB6Ng01-031K19
Chromosome14 (Build37)
Map Location 44,188,412 - 44,327,216
singlet/doubletdoublet
Overlap geneLOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717
Upstream geneLOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342
Downstream geneLOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031K19.bB6Ng01-031K19.g
ACCDH861221DH861222
length1,0261,075
definitionDH861221|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K19, 5' end.DH861222|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,326,179 - 44,327,216)(44,188,412 - 44,189,503)
sequence
gaattctcagaggacttaactagtatttacaaagaaaaaggctttataac
acctcctaccccaggagattcaaatgtaataccaaggtaaacacagggaa
caaagtgccctcaagattaacttgggcctctaaggattcaacactatcat
gccctacaaactgtgtatcacacaaatcctcagaccccatcaaaggtctc
agaaccccagatcctgaacaaaacacacacaactaatttcacacacacac
acacacacacacacacacacacacacacacacacacacacaaattaaaac
gccaaataaatccaggtaggttccatagtcttagagtacaatgaacaaga
ttagagtaaagcagtaatggcctgcagacattgcattcttacacagtaag
gcagcagttgtgaccaggtcctaccagctgttgacagaaccaatcagact
ccaagccccacaagggcaaatacaaaagaggatgaccatagaacacacag
tacttatctcattcaacaactaaacaactgtcaagacttcttataatgaa
tgtgagagatggcacactccattatgagagaaaatgtgggtttacagaga
ggacacaatacagtcaacaggatacagggcataattttacctgtagttca
aatcagtattcatgtcaatgtccaagattggaaaaagttctaacctctta
gcatttatcttcctgatataaaatttcatatcttctagtttattcatatt
cttcatatgattagtgatgttgcaattttgggatgattttttcccagcag
acactgaagataaataaacacaaatgcatttgcatagttgatggcccagg
gcaggggagaccattctgagtcccaaagagaagttgaggagagaaaacta
gagaaaggattagtcactgaaaagcagaaggttattttgagctggtctgc
taagctatattcctcttcccaccaccatgtggtcacactaacccaccact
cttataaatacccctgctctgaaatc
gaattcacatgatccttgagggctgagtcatggagtagcttcagtgacta
gaagaatgggtcagatttatttcctatactcaaagcaggcagaaaaggat
gaaagtcctccatgtaatatcaaatatatccagaagagggtgctagatcc
tcagtacccaaagtatccagaagatgggataagacagattgccatccagt
accaaagtcatccagagagcatcttaagatcaaagtcagctggtgtggta
gccctagcagcaaggaggaggaggctgcatcctgatgccctcttctgaca
gtcagaatgaaattaaggaactcttgcagagtagctgcagccttgatatt
tcctgctctctgtcacacaaatgcttcccagaagctccaagctcctgatt
cccattactggaagtccaagctcaagcccaccttctgtaggaagctcact
ctttcatgcccaggattcacagtgacttccccaggaccattaattcttgc
tctttaacactaagaccaaaggccatcttgtggctgcctctttctggtct
cggtatgttcattgttctctcctccaagaggcctgctcagttttgtcagc
atgactaagggtgaaccataaaggtagttaatgaatactccaatagcagt
tggagtcaccacacattagtaacatcacagaaaatgccagggctctccag
gttactacacaacatctagggaagggacttctgatgtctcacaggacagc
tcttaccttcctgctcagtacctcacccaaatttacctgaagtcaaagtg
ccttttccagagtgtgggatagattgccttttggtactcaaaatattaaa
agtggctatcaatcaccttccaatgacaaacgtatccagaagagatcctt
tggatcccatgcaatacacatgaaatacccagactccagatagacactag
gcatactcacacatctagataaagtgggaaagatcccttgcagtactgaa
ctatcagaaaaggctaatacacgttccagcagtctttgctgtggagactg
ttctgacagatgaatgtcaccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44326179_44327216
seq2: B6Ng01-031K19.b_48_1073 (reverse)

seq1  GATTTCAGAGCAAGGGGTAATGTAATAAAGAGT-GTGTGTTAGTTGTGAC  49
      ||||||||||| |||||| || ||   |||||| ||| ||||| ||||||
seq2  GATTTCAGAGC-AGGGGT-ATTTA--TAAGAGTGGTGGGTTAG-TGTGAC  45

seq1  CAACAATGGTGGTTGGGAAGAGGAATATAGCTTAGCAGACCAGCTCAAAA  99
      ||   ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CA--CATGGTGG-TGGGAAGAGGAATATAGCTTAGCAGACCAGCTCAAAA  92

seq1  TAACCTTTCTGCTTTTTCAGTGACTAATCCTTTCTCTAGTTTTTCTCTTC  149
      ||||| |||||| |||||||||||||||||||||||||| ||||||| ||
seq2  TAACC-TTCTGC-TTTTCAGTGACTAATCCTTTCTCTAG-TTTTCTC-TC  138

seq1  CTCAACCTTCTCTTTGGGACTCAGAATGGTCTCCCCTGCCCTGGGCCATC  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAA-CTTCTCTTTGGGACTCAGAATGGTCTCCCCTGCCCTGGGCCATC  187

seq1  AACTATGCAAATGCATTTGTGTTTATTTATCTTCAGTGTCTGCTGGGAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCAAATGCATTTGTGTTTATTTATCTTCAGTGTCTGCTGGGAAA  237

seq1  AAATCATCCCAAAATTGCAACATCACTAATCATATGAAGAATATGAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCCCAAAATTGCAACATCACTAATCATATGAAGAATATGAATAA  287

seq1  ACTAGAAGATATGAAATTTTATATCAGGAAGATAAATGCTAAGAGGTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGATATGAAATTTTATATCAGGAAGATAAATGCTAAGAGGTTAG  337

seq1  AACTTTTTCCAATCTTGGACATTGACATGAATACTGATTTGAACTACAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTCCAATCTTGGACATTGACATGAATACTGATTTGAACTACAGG  387

seq1  TAAAATTATGCCCTGTATCCTGTTGACTGTATTGTGTCCTCTCTGTAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTATGCCCTGTATCCTGTTGACTGTATTGTGTCCTCTCTGTAAAC  437

seq1  CCACATTTTCTCTCATAATGGAGTGTGCCATCTCTCACATTCATTATAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTCTCTCATAATGGAGTGTGCCATCTCTCACATTCATTATAAG  487

seq1  AAGTCTTGACAGTTGTTTAGTTGTTGAATGAGATAAGTACTGTGTGTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGACAGTTGTTTAGTTGTTGAATGAGATAAGTACTGTGTGTTCT  537

seq1  ATGGTCATCCTCTTTTGTATTTGCCCTTGTGGGGCTTGGAGTCTGATTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCATCCTCTTTTGTATTTGCCCTTGTGGGGCTTGGAGTCTGATTGG  587

seq1  TTCTGTCAACAGCTGGTAGGACCTGGTCACAACTGCTGCCTTACTGTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCAACAGCTGGTAGGACCTGGTCACAACTGCTGCCTTACTGTGTA  637

seq1  AGAATGCAATGTCTGCAGGCCATTACTGCTTTACTCTAATCTTGTTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAATGTCTGCAGGCCATTACTGCTTTACTCTAATCTTGTTCATT  687

seq1  GTACTCTAAGACTATGGAACCTACCTGGATTTATTTGGCGTTTTAATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTAAGACTATGGAACCTACCTGGATTTATTTGGCGTTTTAATTTG  737

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  787

seq1  AAATTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTCTGAGACCTTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTGTGTGTGTTTTGTTCAGGATCTGGGGTTCTGAGACCTTTGA  837

seq1  TGGGGTCTGAGGATTTGTGTGATACACAGTTTGTAGGGCATGATAGTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTGAGGATTTGTGTGATACACAGTTTGTAGGGCATGATAGTGTT  887

seq1  GAATCCTTAGAGGCCCAAGTTAATCTTGAGGGCACTTTGTTCCCTGTGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTAGAGGCCCAAGTTAATCTTGAGGGCACTTTGTTCCCTGTGTT  937

seq1  TACCTTGGTATTACATTTGAATCTCCTGGGGTAGGAGGTGTTATAAAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGTATTACATTTGAATCTCCTGGGGTAGGAGGTGTTATAAAGCC  987

seq1  TTTTTCTTTGTAAATACTAGTTAAGTCCTCTGAGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGTAAATACTAGTTAAGTCCTCTGAGAATTC  1026

seq1: chr14_44188412_44189503
seq2: B6Ng01-031K19.g_66_1140

seq1  GAATTCACATGATCCTTGAGGGCTGAGTCATGGAGTAGCTTCAGTGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGATCCTTGAGGGCTGAGTCATGGAGTAGCTTCAGTGACTA  50

seq1  GAAGAATGGGTCAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGGTCAGATTTATTTCCTATACTCAAAGCAGGCAGAAAAGGAT  100

seq1  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCCATGTAATATCAAATATATCCAGAAGAGGGTGCTAGATCC  150

seq1  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACCCAAAGTATCCAGAAGATGGGATAAGACAGATTGCCATCCAGT  200

seq1  ACCAAAGTCATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGTCATCCAGAGAGCATCTTAAGATCAAAGTCAGCTGGTGTGGTA  250

seq1  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTTCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGCAGCAAGGAGGAGGAGGCTGCATCCTGATGCCCTCTTCTGACA  300

seq1  GTCAGAATGAAATTAAGGAACTCTTGCAGAGTAGCTGCAGCCTTGATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAATTAAGGAACTCTTGCAGAGTAGCTGCAGCCTTGATATT  350

seq1  TCCTGCTCTCTGTCACACAAATGCTTCCCAGAAGCTCCAAGCTCCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCTCTGTCACACAAATGCTTCCCAGAAGCTCCAAGCTCCTGATT  400

seq1  CCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACTGGAAGTCCAAGCTCAAGCCCACCTTCTGTAGGAAGCTCACT  450

seq1  CTTTCATGCCCAGGATTCACAGTGACTTCCCCAGGACCATTAATTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGCCCAGGATTCACAGTGACTTCCCCAGGACCATTAATTCTTGC  500

seq1  TCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAACACTAAGACCAAAGGCCATCTTGTGGCTGCCTCTTTCTGGTCT  550

seq1  CGGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATGTTCATTGTTCTCTCCTCCAAGAGGCCTGCTCAGTTTTGTCAGC  600

seq1  ATGACTAAGGGTGAACCATAAAGGTAGTTAATGAATACTCCAATAGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAGGGTGAACCATAAAGGTAGTTAATGAATACTCCAATAGCAGT  650

seq1  TGGAGTCACCACACATTAGTAACATCACAGAAAATGCCAGGGCTCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCACCACACATTAGTAACATCACAGAAAATGCCAGGGCTCTCCAG  700

seq1  GTTACTACACAACATCTAGGGAAGGGACTTCTGATGTCTCACAGGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACACAACATCTAGGGAAGGGACTTCTGATGTCTCACAGGACAGC  750

seq1  TCTTACCTTCCTGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTTCCTGCTCAGTACCTCACCCAAATTTACCTGAAGTCAAAGTG  800

seq1  CCTTTTCCAGAGTGTGGGATAGATTGCCTTTTGGTACTCAAAATATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCAGAGTGTGGGATAGATTGCCTTTTGGTACTCAAAATATTAAA  850

seq1  AGGTGGCTATCAATCACCTTCCAATGACAAACGTATCCAGAAGAGATCCT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGGCTATCAATCACCTTCCAATGACAAACGTATCCAGAAGAGATCCT  899

seq1  TTGGATCCCCATGCAAATACACATGAAATACCCAGACTCCAGAATAAGAC  950
      |||||| ||||||| ||||||||||||||||||||||||||||   ||||
seq2  TTGGAT-CCCATGC-AATACACATGAAATACCCAGACTCCAGA--TAGAC  945

seq1  ACTAGGCAATACTCAACACATCTAGATAAAGTGTGATAGATCCCCTTGCA  1000
      ||||||| |||||| |||||||||||||||||| || |||| ||||||||
seq2  ACTAGGC-ATACTC-ACACATCTAGATAAAGTGGGAAAGAT-CCCTTGCA  992

seq1  GTACTGAAACTATCCAGAAGAGGCTAATACACG-TCCAGCCAGTTTCTAT  1049
      |||||| |||||| ||||| ||||||||||||| ||||| |||  ||| |
seq2  GTACTG-AACTAT-CAGAAAAGGCTAATACACGTTCCAG-CAG--TCTTT  1037

seq1  GCTGTGACGACTGTCCTGGACAGAATGGAAAATGTCACCACTA  1092
      ||||||  |||||| || ||||| |||   |||||||||||||
seq2  GCTGTGGAGACTGTTCT-GACAG-ATG---AATGTCACCACTA  1075