BAC Information

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BAC

Clone NameB6Ng01-034A16
Chromosome14 (Build37)
Map Location 69,009,254 - 69,119,351
singlet/doubletdoublet
Overlap geneAdam7
Upstream geneEbf2, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072
Downstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034A16.bB6Ng01-034A16.g
ACCDH862916DH862917
length9941,161
definitionDH862916|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A16, 5' end.DH862917|Mus musculus domesticus DNA, BAC clone: B6Ng01-034A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,009,254 - 69,010,257)(69,118,168 - 69,119,351)
sequence
gaattctcatgctagctcagcaagcatataacaaagtctcctttcacagt
gaggaaaacgaaaacctggaagattacagcgtgtagcccattctgagtgc
gaatataaccttcttactgcaagaactgtttttctactgcaatgcagtta
gttttggttgacatttaaaactttaaaaaccaagttgtaagtatcacact
ataatatttcttaccactgtctttactgtaagtaagcagcaaaatgaagc
agaaaacaaataaacaacatcaaacaaacaaaaaacgtgggtagagaacc
aaaagatagattcaaactgttcactcttgaaactggcacttgaaagactc
actattttggttaagtcatgtaaaaatttgtactggtaattttttgcaat
tcaggcatacaaactagaagattcttgaatttaattggcaccactcaagt
ttccttatatgagtttccttctattcccatgtttccagtaaggaaacatt
gcatgtttcctttatgaagaaaaatggatgtaagtaggaagtaggcactt
ccaatcccagactaatacaggaattgatgaatgcttgtcctcttgagata
aaggactgattgtattttgtcccaaattatgttagaacaacattttatca
tttttgcaccgttttgcactgattgataacaagatgctgttatcatcagt
aaatgggtatttttcctttactgaaaaaaaaaaaaccaccaggaggaaat
gtagttttctgtatggatgggtcagcctgggggtgaatctgtgtctctga
tatttattaccatggctaccacgtaacctaagatgcatgtaatggagagc
caagtgccttgtgaaaggagcagctgggatgctctgacagggcatgaccc
catgctggagaaagagagctagaagagacatcagtctacagggattgctt
ccagctgcagagtcaactgtcttctagaataccgcaagatcatc
gaattcctggggacaccttttgtttaaaatgttcatacttggtcataagc
tttgttgattaactgtgatttaaaaaaacaaaaaacaacttttagttaaa
atgtgtagttatgggtttcagcatggcatttggcatgcatgtattgtttg
tttatcttccttccttgcttctcatcctcattcctcccacatctcttgta
cccttttacctctggcagtctcttctctgattttgttttgtatgtattct
attactgtctcctcctactgctttccttaaacacacttttcccatctcaa
gtaccctttagttttgtggtctatagccacatccaaaatgcaaagttaaa
agccaaggactacataggagacacacatgagatatttttcctgctgaatc
tgggttaattcacttaactgagtaatttccagatctacccaccttcttgc
taatttcatgattttatttttctctatggctgaataaaattccattgtgt
atagtacaatattttcattacctcatttgtctattgaaggatatgtagac
tgattccactttcttgttatttgggaatagtaaacattgagcatggatgt
ccaggaacctccatgatatggtttagagacatttgcgtgactgtccagaa
gtggtcttgctggtattcatcactgtaattattgagtttgtttttattat
ttaagttctgttctttaaatgactttcttactcatgtcaccccagtcttg
gccccagtttttgaggggcagaaacaatgatacttttcaccgaagccttg
atcagctccagggctctggactctcagttaactaagatggtgaaaacaaa
gaactcacacagattctctagtaatgactcaaccctaagtgtatcttcaa
agtcacacagaagacattcatacttagagctaggagatggaccacacaca
gattctcaggtctgcatgctccctggaaggatgagaggctgtgatcagag
gagttctgtctgggattcttttgcttccttgaaaaggacctcaattgtgc
cttaacaaactgtgcatgcaatttctacctgcatttcccggaaccggtgt
gtcgtatcagatagttcaatggggttcagtacctgcctaacatctctatg
cgacattctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69009254_69010257
seq2: B6Ng01-034A16.b_45_1038

seq1  GAATTCTCATGCTAGCTCAGCAAGCATATAACTATGTCTCCTTTCACAGT  50
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  GAATTCTCATGCTAGCTCAGCAAGCATATAACAAAGTCTCCTTTCACAGT  50

seq1  GAGGAAAACGAAAACCTGGAAGATTACAGCGTGTAGCCCATTCTGAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAACGAAAACCTGGAAGATTACAGCGTGTAGCCCATTCTGAGTGC  100

seq1  GAATATAACCTTCTTACTGCAAGAACTGTTTTTCTACTGCAATGCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAACCTTCTTACTGCAAGAACTGTTTTTCTACTGCAATGCAGTTA  150

seq1  GTTTTGGTTGACATTTAAAACTTTAAAAACCAAGTTGTAAGTATCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTTGACATTTAAAACTTTAAAAACCAAGTTGTAAGTATCACACT  200

seq1  ATAATATTTCTTACCACTGTCTTTACTGTAAGTAAGCAGCAAAATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTCTTACCACTGTCTTTACTGTAAGTAAGCAGCAAAATGAAGC  250

seq1  AGAAAACAAATAAACAACATCAAACAAACAAAAAACGTGGGTAGAGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAATAAACAACATCAAACAAACAAAAAACGTGGGTAGAGAACC  300

seq1  AAAAGATAGATTCAAACTGTTCACTCTTGAAACTGGCACTTGAAAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAGATTCAAACTGTTCACTCTTGAAACTGGCACTTGAAAGACTC  350

seq1  ACTATTTTGGTTAAGTCATGTAAAAATTTGTACTGGTAATTTTTTGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTGGTTAAGTCATGTAAAAATTTGTACTGGTAATTTTTTGCAAT  400

seq1  TCAGGCATACAAACTAGAAGATTCTTGAATTTAATTGGCACCACTCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATACAAACTAGAAGATTCTTGAATTTAATTGGCACCACTCAAGT  450

seq1  TTCCTTATATGAGTTTCCTTCTATTCCCATGTTTCCAGTAAGGAAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATATGAGTTTCCTTCTATTCCCATGTTTCCAGTAAGGAAACATT  500

seq1  GCATGTTTCCTTTATGAAGAAAAATGGATGTAAGTAGGAAGTAGGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCCTTTATGAAGAAAAATGGATGTAAGTAGGAAGTAGGCACTT  550

seq1  CCAATCCCAGACTAATACAGGAATTGATGAATGCTTGTCCTCTTGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCCAGACTAATACAGGAATTGATGAATGCTTGTCCTCTTGAGATA  600

seq1  AAGGACTGATTGTATTTTGTCCCAAATTATGTTAGAACAACATTTTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGATTGTATTTTGTCCCAAATTATGTTAGAACAACATTTTATCA  650

seq1  -TTTTGCACCGTTTTGCACTGATTGATAACAAGATGCTGTTATCATCAGT  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCACCGTTTTGCACTGATTGATAACAAGATGCTGTTATCATCAGT  700

seq1  AAAT-GGTATTTTTCCTTTACTGAAAAAAAAAAAACCACCAGGAGGAAAT  748
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTATTTTTCCTTTACTGAAAAAAAAAAAACCACCAGGAGGAAAT  750

seq1  GTAGTTTTCTGTATGGATGGGTCAGCCTGGGGGTGAATCTGTGTCTCCTG  798
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAGTTTTCTGTATGGATGGGTCAGCCTGGGGGTGAATCTGTGTCT-CTG  799

seq1  ATATTTATTACCATGGCTACCACGTAACCTAAGATGCATGTAATGGAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTACCATGGCTACCACGTAACCTAAGATGCATGTAATGGAGAG  849

seq1  CCAAGTGCCTTGTGCAGAGGAGCAGCTGGGATGCTCTGACAAGGGCATGA  898
      |||||||||||||| | ||||||||||||||||||||||| |||||||||
seq2  CCAAGTGCCTTGTG-AAAGGAGCAGCTGGGATGCTCTGAC-AGGGCATGA  897

seq1  CCCCATGCTGGAGAAAGAGAGCCTAGAAAGAGACATCAGTCTAACCAGGG  948
      ||||||||||||||||||||| |||| ||||||||||||||||  |||||
seq2  CCCCATGCTGGAGAAAGAGAG-CTAG-AAGAGACATCAGTCTA--CAGGG  943

seq1  ATTGCTTCCCAGGCTGCAGAGTCAAACTGTCTCCTAGAATACCGCAAGAA  998
      |||||||||   ||||||||||| |||||||| |||||||||||||||| 
seq2  ATTGCTTCC--AGCTGCAGAGTC-AACTGTCTTCTAGAATACCGCAAGA-  989

seq1  TTCATC  1004
       |||||
seq2  -TCATC  994

seq1: chr14_69118168_69119351
seq2: B6Ng01-034A16.g_67_1227 (reverse)

seq1  CTAGAATATGTCGCATAAGAGATGTTTCATGCATGTCTACTGAACCCCAC  50
      |||||  ||||||||| |||||||||  | ||| |  |||||||||||| 
seq2  CTAGA--ATGTCGCAT-AGAGATGTT--AGGCAGG--TACTGAACCCCA-  42

seq1  TAGAACTATCTTGGATACGGACTACACAGGTTCTGCGGGGAATGCAGTTG  100
      | |||||||||  ||||| ||| |||| |||||  |||| ||||||| | 
seq2  TTGAACTATCT--GATAC-GAC-ACACCGGTTC--CGGGAAATGCAGGTA  86

seq1  GAAATTTGCATGCACAGTTTTTGTTAGGCACAATTTGAGGTCCTTTTCAG  150
      |||| ||||||||||||||| | | |||||||| ||||||||||||||| 
seq2  GAAA-TTGCATGCACAGTTTGT-TAAGGCACAA-TTGAGGTCCTTTTCAA  133

seq1  TGAAAGCAAAGAATCCCAGACAGAACTCCTCTGATCACAGCCTCTCATCC  200
       |||   |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAAGAATCCCAGACAGAACTCCTCTGATCACAGCCTCTCATCC  183

seq1  TTCCAGGGAGCACTGCAGAACTGAGAATCTTGTTGTGT-TGGTCCATCTC  249
      |||||||||||| |||||| |||||||||    ||||| |||||||||||
seq2  TTCCAGGGAGCA-TGCAGACCTGAGAATC----TGTGTGTGGTCCATCTC  228

seq1  CTAGCTCTAAGTATGAATTGTCTTCCTGTGTGACTTTGAAGATACACTTA  299
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CTAGCTCTAAGTATGAA-TGTCTT-CTGTGTGACTTTGAAGATACACTTA  276

seq1  GGGTTGAGTCATTACTAGAGAATCTGTGTGAGTTCTTTGTTTTCACCATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGTCATTACTAGAGAATCTGTGTGAGTTCTTTGTTTTCACCATC  326

seq1  TTAGTTAACTGAGAGTCCAGAGCCCTGGAGCTGATCAAGGCTTCGGTGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAACTGAGAGTCCAGAGCCCTGGAGCTGATCAAGGCTTCGGTGAA  376

seq1  AAGTATCATTGTTTCTGCCCCTCAAAAACTGGGGCCAAGACTGGGGTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCATTGTTTCTGCCCCTCAAAAACTGGGGCCAAGACTGGGGTGAC  426

seq1  ATGAGTAAGAAAGTCATTTAAAGAACAGAACTTAAATAATAAAAACAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAGAAAGTCATTTAAAGAACAGAACTTAAATAATAAAAACAAAC  476

seq1  TCAATAATTACAGTGATGAATACCAGCAAGACCACTTCTGGACAGTCACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATTACAGTGATGAATACCAGCAAGACCACTTCTGGACAGTCACG  526

seq1  CAAATGTCTCTAAACCATATCATGGAGGTTCCTGGACATCCATGCTCAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTCTAAACCATATCATGGAGGTTCCTGGACATCCATGCTCAAT  576

seq1  GTTTACTATTCCCAAATAACAAGAAAGTGGAATCAGTCTACATATCCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTATTCCCAAATAACAAGAAAGTGGAATCAGTCTACATATCCTTC  626

seq1  AATAGACAAATGAGGTAATGAAAATATTGTACTATACACAATGGAATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAAATGAGGTAATGAAAATATTGTACTATACACAATGGAATTTT  676

seq1  ATTCAGCCATAGAGAAAAATAAAATCATGAAATTAGCAAGAAGGTGGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCATAGAGAAAAATAAAATCATGAAATTAGCAAGAAGGTGGGTA  726

seq1  GATCTGGAAATTACTCAGTTAAGTGAATTAACCCAGATTCAGCAGGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAAATTACTCAGTTAAGTGAATTAACCCAGATTCAGCAGGAAAA  776

seq1  ATATCTCATGTGTGTCTCCTATGTAGTCCTTGGCTTTTAACTTTGCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATGTGTGTCTCCTATGTAGTCCTTGGCTTTTAACTTTGCATTT  826

seq1  TGGATGTGGCTATAGACCACAAAACTAAAGGGTACTTGAGATGGGAAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGGCTATAGACCACAAAACTAAAGGGTACTTGAGATGGGAAAAG  876

seq1  TGTGTTTAAGGAAAGCAGTAGGAGGAGACAGTAATAGAATACATACAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAAGGAAAGCAGTAGGAGGAGACAGTAATAGAATACATACAAAA  926

seq1  CAAAATCAGAGAAGAGACTGCCAGAGGTAAAAGGGTACAAGAGATGTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAGAGAAGAGACTGCCAGAGGTAAAAGGGTACAAGAGATGTGGG  976

seq1  AGGAATGAGGATGAGAAGCAAGGAAGGAAGATAAACAAACAATACATGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGGATGAGAAGCAAGGAAGGAAGATAAACAAACAATACATGCA  1026

seq1  TGCCAAATGCCATGCTGAAACCCATAACTACACATTTTAACTAAAAGTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATGCCATGCTGAAACCCATAACTACACATTTTAACTAAAAGTTG  1076

seq1  TTTTTTGTTTTTTTAAATCACAGTTAATCAACAAAGCTTATGACCAAGTA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTAAATCACAGTTAATCAACAAAGCTTATGACCAAGTA  1126

seq1  TGAACATTTTAAACAAAAGGTGTCCCCAGGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTAAACAAAAGGTGTCCCCAGGAATTC  1161