BAC Information

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BAC

Clone NameB6Ng01-034D17
Chromosome14 (Build37)10 (Build37)
Map Location 24,722,709 - 24,723,6085,440,846 - 5,441,232
singlet/doubletsingletsinglet
Overlap geneKcnma1
Upstream gene1700112E06Rik
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D17.bB6Ng01-034D17.g
ACCDH863044DH863045
length893654
definitionDH863044|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D17, 5' end.DH863045|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(24,722,709 - 24,723,608)(5,440,846 - 5,441,232)
sequence
gaattctgcggttactgcaacagccagaacttgcttggtcacacatagaa
cgggggaaaaaatattccaacgttcaagtttggagtcttctggcaagaga
agtgccttctgcttggtggtattgtaaatctggcagggactttacatgaa
caaatagcttgcaaggtccagtgtggctcagggctgtccccagagagtca
tgccatttagtgggtccttgtgtgaagacaggaacgatttcaacaaaatg
gcagacttaaaaggcctggcagaatgcctggcacacacagaagcctctaa
gtatctgatgccatgttgtgtggcaattcagaaaataacaattcaggtag
gaaagataaagtttgcatctggttcccatgccaacccaagaaaaaagttc
aaaatgggatgattctagctattgtttagagggttctgtgtcccttagga
aagctctggccacaacacagcaaaagctacaggacacatgcaagccttca
cattcactccagcctcccgttagcctcagcctgtgaggcacacaacagcc
tttctcaggatcagcagagaaaagcaaggataggagcttagcctgcatct
tgaccaagaaagtccaggttggcttcaacctcatctccactgctatagct
ctgaactcacataagacatcaaaatgccaacagattcccttaaaagtctt
cccaatttctctgtatagttattctctctaaccctgagaacttctggttc
atttgctaaacagatttctgctgagcatggaccatgtgtcaggctttata
ggcaatgactttaattagaatttgacaggaagagaaacattatacaagag
tagaatagcaaggattcagccaggcagagtgcacttgttacag
gaattctatgtaactaaggggtcatgtcctattatttggcaatgtacccg
gttcattctgagggtgttccaggaggcccttatctcaaaaatgttcttgg
aacagtctttagttgggagggttcgaactctagggtgaggagttcaggaa
tgtattctggggtgaagagttcaggagtgttctgggaacaatctctggat
ggaaggggtcgggctctggggtgaggaagagttcagtaaaatttttttat
ctttattcttcaactccagcttgtttcttcataccatttgcttggaaaat
tgttttccagcctttcattctaaggtagtgtctatctttttctctgagat
gagtttcctgtaagcagcaaaatgttgggtcttgtttgtgtagccagttt
gttagtctatgtctttttattggggagttgagaccattgatattaagaga
tattaaggaaaagtaattgttggctcctcttatttttgttgttaaatttg
gcattctgtttttgtggctgtcttcttttaggtttgttgagggattacct
tcttgttttttctaggggcgaggttccttgtccttgtattggtttttttt
ctgttattatcctttgaagggctgggatttcgtggaaaggtagtgtgtga
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_24722709_24723608
seq2: B6Ng01-034D17.b_46_938

seq1  GAATTCTGCGGTTACTGCAACAGCCAGAACTTGCTTGGTCACACATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCGGTTACTGCAACAGCCAGAACTTGCTTGGTCACACATAGAA  50

seq1  CGGGGGAAAAAATATTCCAACGTTCAAGTTTGGAGTCTTCTGGCAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAAAAAATATTCCAACGTTCAAGTTTGGAGTCTTCTGGCAAGAGA  100

seq1  AGTGCCTTCTGCTTGGTGGTATTGTAAATCTGGCAGGGACTTTACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTCTGCTTGGTGGTATTGTAAATCTGGCAGGGACTTTACATGAA  150

seq1  CAAATAGCTTGCAAGGTCCAGTGTGGCTCAGGGCTGTCCCCAGAGAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCTTGCAAGGTCCAGTGTGGCTCAGGGCTGTCCCCAGAGAGTCA  200

seq1  TGCCATTTAGTGGGTCCTTGTGTGAAGACAGGAACGATTTCAACAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTAGTGGGTCCTTGTGTGAAGACAGGAACGATTTCAACAAAATG  250

seq1  GCAGACTTAAAAGGCCTGGCAGAATGCCTGGCACACACAGAAGCCTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTAAAAGGCCTGGCAGAATGCCTGGCACACACAGAAGCCTCTAA  300

seq1  GTATCTGATGCCATGTTGTGTGGCAATTCAGAAAATAACAATTCAGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGATGCCATGTTGTGTGGCAATTCAGAAAATAACAATTCAGGTAG  350

seq1  GAAAGATAAAGTTTGCATCTGGTTCCCATGCCAACCCAAGAAAAAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATAAAGTTTGCATCTGGTTCCCATGCCAACCCAAGAAAAAAGTTC  400

seq1  AAAATGGGATGATTCTAGCTATTGTTTAGAGGGTTCTGTGTCCCTTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGATGATTCTAGCTATTGTTTAGAGGGTTCTGTGTCCCTTAGGA  450

seq1  AAGCTCTGGCCACAACACAGCAAAAGCTACAGGACACATGCAAGCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGCCACAACACAGCAAAAGCTACAGGACACATGCAAGCCTTCA  500

seq1  CATTCACTCCAGCCTCCCGTTAGCCTCAGCCTGTGAGGCACACAACAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTCCAGCCTCCCGTTAGCCTCAGCCTGTGAGGCACACAACAGCC  550

seq1  TTTCTCAGGATCAGCAGAGAAAAGCAAGGATAGGAGCTTAGCCTGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGATCAGCAGAGAAAAGCAAGGATAGGAGCTTAGCCTGCATCT  600

seq1  TGACCAAGAAAGTCCAGGTTGGCTTCAACCTCATCTCCACTGCTATAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGAAAGTCCAGGTTGGCTTCAACCTCATCTCCACTGCTATAGCT  650

seq1  CTGAACTCACATAAGACATCAAAATGCCAACAGATTCCCTTAAAAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCACATAAGACATCAAAATGCCAACAGATTCCCTTAAAAGTCTT  700

seq1  CCCAACTTCTCTGTATAGTTATTCTCTCTAACCCTGAGAACTTCTGGTTC  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTCTCTGTATAGTTATTCTCTCTAACCCTGAGAACTTCTGGTTC  750

seq1  ATTTGCTAAACAGATTTCTGCTGAGCATGGACCATGTGCCAGGCTTTATA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTTGCTAAACAGATTTCTGCTGAGCATGGACCATGTGTCAGGCTTTATA  800

seq1  GGCAATGACTTTAAATTAGAATTTGACAGGGAAGAAGAAACCAATATACA  850
      |||||||||||| ||||||||||||||| ||||| ||||| || ||||| 
seq2  GGCAATGACTTT-AATTAGAATTTGACA-GGAAG-AGAAA-CATTATAC-  845

seq1  AAGAGTAGAAACAGCAAGGAGTCCAGCCAGGCAGAAGTGCACTTG-TACA  899
      |||||||| || |||||||| | ||||||||||| |||||||||| ||||
seq2  AAGAGTAG-AATAGCAAGGA-TTCAGCCAGGCAG-AGTGCACTTGTTACA  892

seq1  G  900
      |
seq2  G  893

seq1: chr10_5440846_5441232
seq2: B6Ng01-034D17.g_330_721 (reverse)

seq1  AAATTCACACATTACCTTTCCAC-AAAT-CCAGCCCTTCAAAGGATAATA  48
      ||||||||||| ||||||||||| |||| |||||||||||||||||||||
seq2  AAATTCACACACTACCTTTCCACGAAATCCCAGCCCTTCAAAGGATAATA  50

seq1  ACAG-AAAAAAACCAATACAAGGAC-GGGAAACTC-ACCCTAGAAAAAAC  95
      |||| ||||||||||||||||||||  |||| |||  |||||||||||||
seq2  ACAGAAAAAAAACCAATACAAGGACAAGGAACCTCGCCCCTAGAAAAAAC  100

seq1  AAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAAAACAGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAAAACAGA  150

seq1  ATGCCAACTTTAACAACAAAAATAAAAGGAACCAACAATTACTTTTCCTT  195
      ||||||| ||||||||||||||||| |||| |||||||||||||||||||
seq2  ATGCCAAATTTAACAACAAAAATAAGAGGAGCCAACAATTACTTTTCCTT  200

seq1  AATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGAC  250

seq1  TAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAA  300

seq1  ACTCATCTCAGAGAAAAGGATAGACACTACCTCAGAATGAAAGGCTGGAA  345
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  ACTCATCTCAGAGAAAAAGATAGACACTACCTTAGAATGAAAGGCTGGAA  350

seq1  AACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGT  387
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGT  392