BAC Information

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BAC

Clone NameB6Ng01-038O15
Chromosome14 (Build37)
Map Location 66,387,640 - 66,554,559
singlet/doubletdoublet
Overlap genePbk, Esco2, Ccdc25, Scara3
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
Downstream geneClu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O15.bB6Ng01-038O15.g
ACCDH866334DH866335
length1,2081,152
definitionDH866334|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O15, 5' end.DH866335|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,553,333 - 66,554,559)(66,387,640 - 66,388,828)
sequence
gaattcattaacatgtaaattcccaggtttactaagatctgtaaaatcag
agtcctgcaggtgaggccaggcgacccgagtttcagtgcttctgaggcac
agtgcggtcggtatgaccacggtgctggtgtttggccaggctcagatagc
tcctaccttctagactctaagagttcaagatgagttgtcttaaaattagt
ctcgtcacattcatgctgagatctgtctattctaacctgcttgataccaa
agagacggcttagagtagggagaaacaatggaggcctgagcaacgttcac
cagggtacagactctgagggcgaacaccctcctggagaggcagttggtta
tgctcctggttgaggatatttgggaaccacacccctggctgtattaatta
tgtttcttttgctatggcaagaagaaacttaaggaacggaggactcattg
tggcttcttgtttgagaacagtccatcgtagtgggctgggcagagtaagt
agcaggaggagatagcaagatacatagcctcttcagtcagggcccagcta
gaaaatctcaaggcctactccagtgacccactatggccagcgaggtgctg
cctctaaaaggcatgccttccacaacagcaccatagctaccaaccaagtg
ctcaaaaccatgagccaatagggggcatttcacacagaaaccatagcaag
acgagaagacaaggtaaattagggcaatgccaagtagacataacgagaca
ttagactcaaaatagcaactatcaggtcttcctatttcttttcctttatg
tatgtactctcaaatgagagaaggctcaaacaaaataactattgccaact
gtaaagtgctccccaacccaacaatatgtgagattgtctttgggctctct
caaacatgttaccgttcctaattaatttgatctcttgacagatctgagat
acaaatgttcactagaagcctggggatcctaaatcacttgaaggcataat
ggtttggaggtgctaagaatactaccttcatgtttcctttgtaagatggc
tattctttctggaaaggttcattacctgccaagtcacccacagactgata
tcatcattccgctttgggcatatatatccatctgccgaattggcttcagg
atctggtcagacttcaatcacctgtaaccttcacaacgccaggccagcca
cgcctctg
gaattctcctccctccacctatagctttagagctaaggtggattctacct
gtcagacccttcctattcatccttctccaccaagtagaataggcaaagca
gctttcaagaagaacagttactctctcctgggggagaccttgagctgttg
ggagctattaagacaacactattgtcctgatctctgaattgggcctctcc
ccccgagaagaaaagggggtcaaaagcgggccaccgacgcaccactccga
gaacaaccacagtttgttccagccctaagtcagtgccagatgtcctgacc
tcaagatgtaccctgatactgccaagttcctgcttccctgtgtagtcacc
aaaagaaaaatttctgctgacccatccctcctgctgagaagtacttcctc
tttttccgatgccccatccctcctgctgaggtgcatttcccctgccccat
tcctcctgctgagaagtacttcctctttgcttgtgcatttaaaccttgag
ccttgctaatacattgggaccttgatgctactcagactgcttccatgtgt
cgttcattgcacaagcttctcgtctctctctatcccccatttggttctta
ggagaaggtcccctagagaccctcaaataacttgacctgctggacgggtc
attgagtgagtccaaatggagtcagtagtgtatgctctagtcttaggtct
ttctttagaagttgtatcagagccgggtgcagtggcgcacgcctttaatc
ccagcacttggaagacaggggcaggcagatttctgagttcaaggccagcc
tggtctacaaagtgagttccaggacaaccagggcgacacagagaaactct
gtctcaaaaaaaaaaaaaaaaaaaaaaactgaagagaagatgagaagata
agatgatgatgatgatgagagagagtgtatcaccacatgagcttcacata
tgtgctgatcactgctgagctactgactaaagtttctgctgtgaacagaa
ctttgacaagcaactctaataaggacaacattaatgggggctggctacag
gtcgaaggtcagtccataattccaaggcggaacttgcagatcaggcggta
tggtgaagagggagctgagaattccaccttctctgaggtctagaatgaac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66553333_66554559
seq2: B6Ng01-038O15.b_45_1252 (reverse)

seq1  CAGAGGCGTGGCTGGCCCTGGCGGTGGTGAGAGGTTACAGGTTGAATTGA  50
      ||||||||||||||| |||||| || |||| |||||||||||   |||||
seq2  CAGAGGCGTGGCTGG-CCTGGC-GTTGTGA-AGGTTACAGGT--GATTGA  45

seq1  TGACTGACACAGATCCTCTGAAGGCCACATCTGGCAGAATGGAATTATAA  100
       | ||||| ||||||  ||||| |||| ||  ||||| |||||  |||| 
seq2  AGTCTGAC-CAGATC--CTGAA-GCCA-ATTCGGCAG-ATGGA--TATAT  87

seq1  TTGCCCAAAGC-GAATGATTGATATCAAGTCTGTTGGGTGACTTTGGCAG  149
       |||||||||| |||||| ||||||| |||||| |||||||| |||||||
seq2  ATGCCCAAAGCGGAATGA-TGATATC-AGTCTG-TGGGTGAC-TTGGCAG  133

seq1  GTTAATGAACCTTTCCAGAAAGAATAGCCATCTACCAAAGGAAAACATGG  199
      | |||||||||||||||||||||||||||||||  |||||| ||||||| 
seq2  G-TAATGAACCTTTCCAGAAAGAATAGCCATCTTACAAAGG-AAACATGA  181

seq1  AGGTAGTATTCTTAGCACCTCCAAACCATTATGCCTTCAAGTGATTTAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTATTCTTAGCACCTCCAAACCATTATGCCTTCAAGTGATTTAGG  231

seq1  ATCCCCAGGCTTCTAGTGAACATTTTGTATCTCAGATCTGTCAAGAGATC  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCCCCAGGCTTCTAGTGAACA-TTTGTATCTCAGATCTGTCAAGAGATC  280

seq1  AAATTAATTAGGAACGGTAACATGTTTGAGAGAGCCCAAAGACAATCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAGGAACGGTAACATGTTTGAGAGAGCCCAAAGACAATCTCA  330

seq1  CATATTGTTGGGTTGGGGAGCACTTTACAGTTGGCAATAGTTATTTTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTGGGTTGGGGAGCACTTTACAGTTGGCAATAGTTATTTTGTT  380

seq1  TGAGCCTTCTCTCATTTGAGAGTACATACATAAAGGAAAAGAAATAGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTCTCTCATTTGAGAGTACATACATAAAGGAAAAGAAATAGGAA  430

seq1  GACCTGATAGTTGCTATTTTGAGTCTAATGTCTCGTTATGTCTACTTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGATAGTTGCTATTTTGAGTCTAATGTCTCGTTATGTCTACTTGGC  480

seq1  ATTGCCCTAATTTACCTTGTCTTCTCGTCTTGCTATGGTTTCTGTGTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTAATTTACCTTGTCTTCTCGTCTTGCTATGGTTTCTGTGTGAA  530

seq1  ATGCCCCCTATTGGCTCATGGTTTTGAGCACTTGGTTGGTAGCTATGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCCTATTGGCTCATGGTTTTGAGCACTTGGTTGGTAGCTATGGTG  580

seq1  CTGTTGTGGAAGGCATGCCTTTTAGAGGCAGCACCTCGCTGGCCATAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTGGAAGGCATGCCTTTTAGAGGCAGCACCTCGCTGGCCATAGTG  630

seq1  GGTCACTGGAGTAGGCCTTGAGATTTTCTAGCTGGGCCCTGACTGAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGGAGTAGGCCTTGAGATTTTCTAGCTGGGCCCTGACTGAAGAG  680

seq1  GCTATGTATCTTGCTATCTCCTCCTGCTACTTACTCTGCCCAGCCCACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTATCTTGCTATCTCCTCCTGCTACTTACTCTGCCCAGCCCACTA  730

seq1  CGATGGACTGTTCTCAAACAAGAAGCCACAATGAGTCCTCCGTTCCTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGACTGTTCTCAAACAAGAAGCCACAATGAGTCCTCCGTTCCTTAA  780

seq1  GTTTCTTCTTGCCATAGCAAAAGAAACATAATTAATACAGCCAGGGGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTTGCCATAGCAAAAGAAACATAATTAATACAGCCAGGGGTGT  830

seq1  GGTTCCCAAATATCCTCAACCAGGAGCATAACCAACTGCCTCTCCAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAAATATCCTCAACCAGGAGCATAACCAACTGCCTCTCCAGGAG  880

seq1  GGTGTTCGCCCTCAGAGTCTGTACCCTGGTGAACGTTGCTCAGGCCTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCGCCCTCAGAGTCTGTACCCTGGTGAACGTTGCTCAGGCCTCCA  930

seq1  TTGTTTCTCCCTACTCTAAGCCGTCTCTTTGGTATCAAGCAGGTTAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCCCTACTCTAAGCCGTCTCTTTGGTATCAAGCAGGTTAGAAT  980

seq1  AGACAGATCTCAGCATGAATGTGACGAGACTAATTTTAAGACAACTCATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATCTCAGCATGAATGTGACGAGACTAATTTTAAGACAACTCATC  1030

seq1  TTGAACTCTTAGAGTCTAGAAGGTAGGAGCTATCTGAGCCTGGCCAAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTTAGAGTCTAGAAGGTAGGAGCTATCTGAGCCTGGCCAAACA  1080

seq1  CCAGCACCGTGGTCATACCGACCGCACTGTGCCTCAGAAGCACTGAAACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCGTGGTCATACCGACCGCACTGTGCCTCAGAAGCACTGAAACT  1130

seq1  CGGGTCGCCTGGCCTCACCTGCAGGACTCTGATTTTACAGATCTTAGTAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCGCCTGGCCTCACCTGCAGGACTCTGATTTTACAGATCTTAGTAA  1180

seq1  ACCTGGGAATTTACATGTTAATGAATTC  1227
      ||||||||||||||||||||||||||||
seq2  ACCTGGGAATTTACATGTTAATGAATTC  1208

seq1: chr14_66387640_66388828
seq2: B6Ng01-038O15.g_70_1221

seq1  GAATTCTCCTCCCTCCACCTATAGCTTTAGAGCTAAGGTGGATTCTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCCTCCACCTATAGCTTTAGAGCTAAGGTGGATTCTACCT  50

seq1  GTCAGACCCTTCCTATTCATCCTTCTCCACCAAGTAGAATAGGCAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACCCTTCCTATTCATCCTTCTCCACCAAGTAGAATAGGCAAAGCA  100

seq1  GCTTTCAAGAAGAACAGTTACTCTCTCCTGGGGGAGACCTTGAGCTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGAAGAACAGTTACTCTCTCCTGGGGGAGACCTTGAGCTGTTG  150

seq1  GGAGCTATTAAGACAACACTATTGTCCTGATCTCTGAATTGGGCCTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTAAGACAACACTATTGTCCTGATCTCTGAATTGGGCCTCTCC  200

seq1  CCCCGAGAAGAAAAGGGGGTCAAAAGCGGGCCACCGACGCACCACTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGAAGAAAAGGGGGTCAAAAGCGGGCCACCGACGCACCACTCCGA  250

seq1  GAACAACCACAGTTTGTTCCAGCCCTAAGTCAGTGCCAGATGTCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCACAGTTTGTTCCAGCCCTAAGTCAGTGCCAGATGTCCTGACC  300

seq1  TCAAGATGTACCCTGATACTGCCAAGTTCCTGCTTCCCTGTGTAGTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGTACCCTGATACTGCCAAGTTCCTGCTTCCCTGTGTAGTCACC  350

seq1  AAAAGAAAAATTTCTGCTGACCCATCCCTCCTGCTGAGAAGTACTTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATTTCTGCTGACCCATCCCTCCTGCTGAGAAGTACTTCCTC  400

seq1  TTTTTCCGATGCCCCATCCCTCCTGCTGAGGTGCATTTCCCCTGCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGATGCCCCATCCCTCCTGCTGAGGTGCATTTCCCCTGCCCCAT  450

seq1  TCCTCCTGCTGAGAAGTACTTCCTCTTTGCTTGTGCATTTAAACCTTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGCTGAGAAGTACTTCCTCTTTGCTTGTGCATTTAAACCTTGAG  500

seq1  CCTTGCTAATACATTGGGACCTTGATGCTACTCAGACTGCTTCCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTAATACATTGGGACCTTGATGCTACTCAGACTGCTTCCATGTGT  550

seq1  CGTTCATTGCACAAGCTTCTCGTCTCTCTCTATCCCCCATTTGGTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCATTGCACAAGCTTCTCGTCTCTCTCTATCCCCCATTTGGTTCTTA  600

seq1  GGAGAAGGTCCCCTAGAGACCCTCAAATAACTTGACCTGCTGGACGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGTCCCCTAGAGACCCTCAAATAACTTGACCTGCTGGACGGGTC  650

seq1  ATTGAGTGAGTCCAAATGGAGTCAGTAGTGTATGCTCTAGTCTTAGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGAGTCCAAATGGAGTCAGTAGTGTATGCTCTAGTCTTAGGTCT  700

seq1  TTCTTTAGAAGTTGTATCAGAGCCGGGTGCAGTGGCGCACGCCTTTAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAAGTTGTATCAGAGCCGGGTGCAGTGGCGCACGCCTTTAATC  750

seq1  CCAGCACTTGGAAGACAGGGGCAGGCAGATTTCTGAGTTCAAGGCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTTGGAAGACAGGGGCAGGCAGATTTCTGAGTTCAAGGCCAGCC  800

seq1  TGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCGACACAGAGAAACCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGTCTACAAAGTGAGTTCCAGGACAACCAGGGCGACACAGAGAAACTCT  850

seq1  GTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAG  900
      ||||||||||||||||||||||||||||         |||| |||||| |
seq2  GTCTCAAAAAAAAAAAAAAAAAAAAAAA-------CTGAAG-AGAAGATG  892

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTGTATCAACCACA  950
       ||||| | |||| || || || || ||   |||   |||||| ||||||
seq2  -AGAAG-ATAAGATGATGATGATGATGA--GAGAGAGTGTATC-ACCACA  937

seq1  TGAGCTTCACATATGTGCTGATCACTGCTGAGCTACTGACTTAGAGTTTT  1000
      |||||||||||||||||||||||||||||||||||||||| || ||  ||
seq2  TGAGCTTCACATATGTGCTGATCACTGCTGAGCTACTGAC-TAAAG--TT  984

seq1  TCTGCTGTGAACAGACACTTTGACCAAGGCAACTCTTATAAAGGACAACA  1050
      ||||||||||||||| ||||||||  | |||||||| || ||||||||||
seq2  TCTGCTGTGAACAGA-ACTTTGAC--AAGCAACTCTAAT-AAGGACAACA  1030

seq1  TTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATTACCAA  1100
       ||||| ||||||||| |||||||   || | ||||||||| ||| ||||
seq2  -TTAATGGGGGCTGGC-TACAGGT--CGAAGGTCAGTCCATAATT-CCAA  1075

seq1  GGCGGGAACATGGCAGCATCCAGGCAGGTATGGTGGAGAGGGAGCTGAGA  1150
      ||| ||||| | |||| || ||||| ||||||||| ||||||||||||||
seq2  GGC-GGAAC-TTGCAG-AT-CAGGC-GGTATGGTGAAGAGGGAGCTGAGA  1120

seq1  ATTCTACACCTTCATCTGAAGGCTCCTAGAATGATACTG  1189
      ||||  ||||||| ||||| |    ||||||||| ||||
seq2  ATTC--CACCTTC-TCTGAGG---TCTAGAATGA-ACTG  1152