BAC Information

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BAC

Clone NameB6Ng01-038P19
Chromosome14 (Build37)1 (Build37)
Map Location 80,499,545 - 80,500,03045,056,789 - 45,057,905
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734, Olfm4
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038P19.bB6Ng01-038P19.g
ACCDH866386DH866387
length9621,103
definitionDH866386|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P19, 5' end.DH866387|Mus musculus domesticus DNA, BAC clone: B6Ng01-038P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,499,545 - 80,500,030)(45,056,789 - 45,057,905)
sequence
gaattctcaactgaggaataccaaatggctgagaagcacctcaaacaatg
ttcaacatccttaatcattagggaaatgtaaatcaaaacaaccctcagat
tctacctcacaccattcagaatggttaagataaaaaattcaggtgactgc
agatgctggagaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaactactctggaaatcagtctggtggagtttcc
tcagaaaattggacatagtactaccagaggatccagcaatatctctcccg
ggcatatacccagaaaatgttccaactggtaataaggatacatgattcac
taagttcatagcagccttatttataatagccagaaactaggaagaaccca
gatgcccctcaacagaggaatggatacagaaaatctggtacatttacaca
atggagtactactccactattaaaaacaatgaatttatgaaattcttagg
caaatgaatggatctggaggatatcatcctgagtgaagtaaccctatcac
aaaagaactcacatgatatgtattcactgataagtggatattagcccaga
aacttagaatacccaaaatacaatttgcaaaacccatttgctgctcttaa
atatggccacaattcaattcccaacatcaacactgtgggtgactcatagc
cttccataactccagtttcagaaagtgctctggaacttatactctcttct
agactcttttgggtaccatacacacacatagtgtacgtactatgtttggc
agaacacccatttatataaaacaaaaaataaatattataaagttaaaata
gtttaaagtagaacattgaataatagaagctttgatgggagaaatctgtt
ttcctttgatcttaaagataagatcattcagtctctacagttgctttccg
atgtaggcactt
gaattcagttatcctctctaccctccactcctgataagatctcttatcca
atcactccgggtacaattatgagagtactggctagttttgtgtcaacttg
acacagctggagttatcacagagaaaggagcttcagttgaggaaatgcct
ccatgagattcagctgtaaggcattttctcagttagtgataaaggggaaa
aggctccttgtgggtgggaccatctctgggctggtagtcttggattctat
aagagagcaggctgagcaagccaggggaagcaagccagtaaagaacatcc
ctccatggcttctgcatcagctcctgctttctgacctgcttgagttccag
tcctgacttcctttggtgataaacagcagtatggaagtgtaagccgaata
aaccctttcctctccaatttgcttgttggtcatgcaggaatagaaaccct
ggctaagacagaggagtatggttctaatagttttgtcacattattgtatg
ttttaatatcacttgtcatcaaaatagcatttcattctaacttgtgtttt
ctttctttctttttttttttattattaggtattttccttgtttacatttt
caatgctatcccaaaggtcattttttcttttcaacatgaaacatagaaca
acaatcattcaaacaatgaaacaaaaatagacacacgtggacagattggt
gcaccaatgacagacaatacccagagagggaagagatcttagtataacca
gaactaatggtatctccagtaggagtcagagagaaagcaagatgtcttct
gatttccccttgtccctaggaaagctctgaaatccattttccttctcttt
tgctaatgtggcccagaccggagacaactgcttttctgaaacctattctc
tctctttatttctcatgtcatatgtatatttaccatcctatttctgggaa
ccatgcacagcataaatatacttgagctaagaatttttctgacatctttg
ttgttgttgtctgtgtttggtatttttctctttcaaattcatttgttaaa
tttatattactttaatcatgctccttctccggatgcacctcttgactggg
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80499545_80500030
seq2: B6Ng01-038P19.b_195_676 (reverse)

seq1  GTTTTGCAAGTTGTAACTTATGTCTTGGTTATTCTAAGTTTCTGGGCTAA  50
      ||||||||| |||||       | |||| |||||||||||||||||||||
seq2  GTTTTGCAAATTGTA-------TTTTGGGTATTCTAAGTTTCTGGGCTAA  43

seq1  TATCCACTTATCAATGAGTACATATCATGTGAGTTCTTTTGTGATTGGGT  100
      ||||||||||||| ||| ||||||||||||||||||||||||||| ||||
seq2  TATCCACTTATCAGTGAATACATATCATGTGAGTTCTTTTGTGATAGGGT  93

seq1  TACCTCACTCAGGATGATACCCTCCAGATCCATCTATTTGCCTAGGAATT  150
      ||| ||||||||||||||| |||||||||||||  ||||||||| |||||
seq2  TACTTCACTCAGGATGATATCCTCCAGATCCATTCATTTGCCTAAGAATT  143

seq1  TCATAAATTCATTCTTTTTAATAGCTGAGTATTACTCCATTGTGTAAATG  200
      ||||||||||||| ||||||||||  ||||| ||||||||||||||||||
seq2  TCATAAATTCATTGTTTTTAATAGTGGAGTAGTACTCCATTGTGTAAATG  193

seq1  TACCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTT  250
      ||||| ||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TACCAGATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTC  243

seq1  CCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATG  300
      | || |||||||||||||||||||||||||||||||| ||||| | ||||
seq2  CTAGTTTCTGGCTATTATAAATAAGGCTGCTATGAACTTAGTGAATCATG  293

seq1  TTTCCTTCTTATCGGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGT  350
      | ||||| ||| | |||||||||| |||||| ||||||||| |||||| |
seq2  TATCCTTATTACCAGTTGGAACATTTTCTGGGTATATGCCCGGGAGAGAT  343

seq1  ATTGTGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAA---CTG  397
      ||||  ||||||||||||||||||||||||||||||||||||||   |  
seq2  ATTGCTGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAAACTCCA  393

seq1  CCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAATAAT  447
      ||||||||||||||||||| |||||||||||||||||||||||||  |||
seq2  CCAGACTGATTTCCAGAGTAGTTGTACAAGCTTGCAATCCCACCAGCAAT  443

seq1  GGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATC  486
      |||||||||||||||||||||||||||||| ||||||||
seq2  GGAGGAGTGTTCCTCTTTCTCCACATCCTCTCCAGCATC  482

seq1: chr1_45056789_45057905
seq2: B6Ng01-038P19.g_69_1171

seq1  GAATTCAGTTATCCTCTCTACCCTCCACTCCTGATAAGATCTCTTATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTATCCTCTCTACCCTCCACTCCTGATAAGATCTCTTATCCA  50

seq1  ATCACTCCGGGTACAATTATGAGAGTACTGGCTAGTTTTGTGTCAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCCGGGTACAATTATGAGAGTACTGGCTAGTTTTGTGTCAACTTG  100

seq1  ACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCT  150

seq1  CCATGAGATTCAGCTGTAAGGCATTTTCTCAGTTAGTGATAAAGGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGATTCAGCTGTAAGGCATTTTCTCAGTTAGTGATAAAGGGGAAA  200

seq1  AGGCTCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGATTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGATTCTAT  250

seq1  AAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCC  300

seq1  CTCCATGGCTTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGCTTCTGCATCAGCTCCTGCTTTCTGACCTGCTTGAGTTCCAG  350

seq1  TCCTGACTTCCTTTGGTGATAAACAGCAGTATGGAAGTGTAAGCCGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTTCCTTTGGTGATAAACAGCAGTATGGAAGTGTAAGCCGAATA  400

seq1  AACCCTTTCCTCTCCAATTTGCTTGTTGGTCATGCAGGAATAGAAACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTCCTCTCCAATTTGCTTGTTGGTCATGCAGGAATAGAAACCCT  450

seq1  GGCTAAGACAGAGGAGTATGGTTCTAATAGTTTTGTCACATTATTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGACAGAGGAGTATGGTTCTAATAGTTTTGTCACATTATTGTATG  500

seq1  TTTTAATATCACTTGTCATCAAAATAGCATTTCATTCTAACTTGTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCACTTGTCATCAAAATAGCATTTCATTCTAACTTGTGTTTT  550

seq1  CTTTCTTTCTTTTTTTTTTTATTATTAGGTATTTTCCTTGTTTACATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTTTTTTTTTATTATTAGGTATTTTCCTTGTTTACATTTT  600

seq1  CAATGCTATCCCAAAGGTCATTTTTTCTTTTCAACATGAAACATAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATCCCAAAGGTCATTTTTTCTTTTCAACATGAAACATAGAACA  650

seq1  ACAATCATTCAAACAATGAAACAAAAATAGACACACGTGGACAGATTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATTCAAACAATGAAACAAAAATAGACACACGTGGACAGATTGGT  700

seq1  GCACCAATGACAGACAATACCCAGAGAGGGAAGAGATCTTAGTATAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATGACAGACAATACCCAGAGAGGGAAGAGATCTTAGTATAACCA  750

seq1  GAACTAATGGTATCTCCAGTAGGAGTCAGAGAGAAAGCAAGATGTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATGGTATCTCCAGTAGGAGTCAGAGAGAAAGCAAGATGTCTTCT  800

seq1  GATTTCCCCTTGTCCCTAGGAAAGCTCTGAAATCCATTTTCCTTCTCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCCCTTGTCCCTAGGAAAGCTCTGAAATCCATTTTCCTTCTCTTT  850

seq1  TGCTAATGTGGCCCAGACCGGAGACAACTGCTTTTCTGAAACCTATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGTGGCCCAGACCGGAGACAACTGCTTTTCTGAAACCTATTCTC  900

seq1  TCTCTTTATTTCTCATGTCATATGTATATTTACCATTCCTATTTCTGGGA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCTTTATTTCTCATGTCATATGTATATTTACCA-TCCTATTTCTGGGA  949

seq1  ACCATGCACAGCATAAATATACTTGAGCTAAGAATTTTTCTGACATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCATGCACAGCATAAATATACTTGAGCTAAGAATTTTTCTGACATC-TT  998

seq1  TGTTGTTGTTGTTCTTGTTGTTTGGTATTTTTCTCTTTTTTAAAAATTCA  1050
      ||||||||||| |||   ||||||||||||||||||||     |||||||
seq2  TGTTGTTGTTG-TCT--GTGTTTGGTATTTTTCTCTTT----CAAATTCA  1041

seq1  TTTTGTTTAATTTTATATTACTTTAAATCATGCTCCTCTCTCCTGATGCA  1100
      |||   |||| ||||||||||||| |||||||||||| ||||| ||||||
seq2  TTT--GTTAAATTTATATTACTTT-AATCATGCTCCT-TCTCCGGATGCA  1087

seq1  CCTCTTGACTGTGGAAA  1117
      ||||||||||| |||||
seq2  CCTCTTGACTG-GGAAA  1103