BAC Information

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BAC

Clone NameB6Ng01-039A22
Chromosome14 (Build37)
Map Location 41,039,218 - 41,040,365
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3, LOC100040439
Downstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A22.bB6Ng01-039A22.g
ACCDH866438DH866439
length1,1331,259
definitionDH866438|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A22, 5' end.DH866439|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaagagaacttcttaggaaaatgctcaaaacacagctgaaca
ctttagaatttgaatgtgttttggattaaatttaactacaaaataaaaat
atttactagttatttgtgcacattatatatacagactcagtaaaaatata
acttctgggataaatataataaaaatatgtggatgttcagaaatatgtag
tatcagctcaccacagccttggcctctgtatctgcagatttctccaacct
tgaattgaaaacactctgacataagtgtcaaaggttaggtggcttatcct
gtttatactgtatctgcactgaataagttaacctttttctgctcactagt
ccataaacaataatgtaataacattatttgcaaaacattgatgatgtatt
tgattttataaattggcatgagaaagatttagatgatacaaaagaatatc
tggagagtataaagcaacagttacctatttaagaatttaagcatccatgg
attttggtatctataggggtctatccatcagtctctgagaataccaatgg
atggctgcatgtgagtacacaaatacccatgaagatgtaaccattgccaa
cttctgcacactgactctttcaagtggcattcacataaagtatgctagat
atgatgacttcataagccaaggatgactagtaaacaaaacagataaaatg
ttcacattgtggtgtttctgaattagtggaaatgaaaataaaaaggatta
ttgagtatatctaacagtaagttatggagaaaagtgcaggttaaagaaga
tgggagttacaatttcaaatatgaagatgaaaagagctcttattagacca
atattttaaaattaagaaattttaattttgagagcctcatacatccatac
agtaaaaaatgaacatatttacagccatttttccgtataaattctcctta
tatattgcccaaaatgtcccctctcagcttcatgtccttcctgtttgata
tctaataaatccagtagctctgctaatatgtatatgagcatggggccttc
atagcatatggaaatctccagtggaacagcttcaagcaacagcaacaaac
aacagcgactcttgtttcctagcaactaccagt
gaattcctaggcaaatggttgtcagtgttttctatggtagcttctacacc
tgagattctctcttctatctcttgtattctgttggttatgcttgcattct
tggcttctgacttcttttctaggttttctattttcagagtggtttccctt
tgtggtttttctactgtttctacttccatttttagatcctggatgttttt
gttcaattctttcacctgattggatgtgttctcctgtatttctttaagga
agttatttatttattcttaaagtcctctatcatcatcttgagaagtgact
ttagatccatatcttgcttttccgttgtgatggtatatccaggacttgct
aaggcgggaaagtttggttctgatgatgccaagaaaccttgctttctgtt
gtttctgttctatgtttgcctcctgacatctgattatctcaagtgcttgc
tgccttcaatatatctgattggagcctgtccttcctgtaatccctgttga
ttcatggctcttcagagtccagatttctttgtgatgctgtgattccagga
tcctgtgaacatgggattctgggtgtgtcagagttcttggcattaatgtt
tcctctgggaccctgagatcttcgtgtgaccaagttcctgggatcctggg
atcctggaatcctaagttcctgggcatgttacagctcctggaagtagtgt
ctgctctcaggaccatggggcagtctactgtgtttgaaagcaaggtatac
cagcattgaccagaagggaaactgtgtccttacccctgctgtcacaggcc
cctcacaattgttttggaaccgatgttgagttccactcacaagagccaag
attctgggtgtgctagggcacctgctgcgtgaagagtcctctggataccg
tgggactgtccactgagtttgcgcccatggtggccctaagctggcgtcaa
ccagaagggacccaagccctggtcaggcggtttcctgcatccctgcctct
gcctgcacaggctgttcactatggtttggaacagatgtgcatccactcac
cagtgaatttaagatcttggggtgctaggtgctataagccatggagagtc
ctctggggaacatggacatctgctggattcatgtccaagatatcgacctg
catgaacgggagatgtccaaggcttcactctccattgtgcaatgagcact
gtcttgaacacatccaatggttgtccagaagaagccggataggaaaaggt
ttctcttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41039218_41040365
seq2: B6Ng01-039A22.b_45_1177

seq1  GAATTCTCTAAGAGAACTTCTTAGGAAAATGCTCAAAACACAGCTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAGAACTTCTTAGGAAAATGCTCAAAACACAGCTGAACA  50

seq1  CTTTAGAATTTGAATGTGTTTTGGATTAAATTTAACTACAAAATAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAATTTGAATGTGTTTTGGATTAAATTTAACTACAAAATAAAAAT  100

seq1  ATTTACTAGTTATTTGTGCACATTATATATACAGACTCAGTAAAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAGTTATTTGTGCACATTATATATACAGACTCAGTAAAAATATA  150

seq1  ACTTCTGGGATAAATATAATAAAAATATGTGGATGTTCAGAAATATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGGATAAATATAATAAAAATATGTGGATGTTCAGAAATATGTAG  200

seq1  TATCAGCTCACCACAGCCTTGGCCTCTGTATCTGCAGATTTCTCCAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTCACCACAGCCTTGGCCTCTGTATCTGCAGATTTCTCCAACCT  250

seq1  TGAATTGAAAACACTCTGACATAAGTGTCAAAGGTTAGGTGGCTTATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAAAACACTCTGACATAAGTGTCAAAGGTTAGGTGGCTTATCCT  300

seq1  GTTTATACTGTATCTGCACTGAATAAGTTAACCTTTTTCTGCTCACTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACTGTATCTGCACTGAATAAGTTAACCTTTTTCTGCTCACTAGT  350

seq1  CCATAAACAATAATGTAATAACATTATTTGCAAAACATTGATGATGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACAATAATGTAATAACATTATTTGCAAAACATTGATGATGTATT  400

seq1  TGATTTTATAAATTGGCATGAGAAAGATTTAGATGATACAAAAGAATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATAAATTGGCATGAGAAAGATTTAGATGATACAAAAGAATATC  450

seq1  TGGAGAGTATAAAGCAACAGTTACCTATTTAAGAATTTAAGCATCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGTATAAAGCAACAGTTACCTATTTAAGAATTTAAGCATCCATGG  500

seq1  ATTTTGGTATCTATAGGGGTCTATCCATCAGTCTCTGAGAATACCAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTATCTATAGGGGTCTATCCATCAGTCTCTGAGAATACCAATGG  550

seq1  ATGGCTGCATGTGAGTACACAAATACCCATGAAGATGTAACCATTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCATGTGAGTACACAAATACCCATGAAGATGTAACCATTGCCAA  600

seq1  CTTCTGCACACTGACTCTTTCAAGTGGCATTCACATAAAGTATGCTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCACACTGACTCTTTCAAGTGGCATTCACATAAAGTATGCTAGAT  650

seq1  ATGATGACTTCATAAGCCAAGGATGACTAGTAAACAAAACAGATAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGACTTCATAAGCCAAGGATGACTAGTAAACAAAACAGATAAAATG  700

seq1  TTCACATTGTGGTGTTTCTGAATTAGTGGAAATGAAAATAAAAAGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTGTGGTGTTTCTGAATTAGTGGAAATGAAAATAAAAAGGATTA  750

seq1  TTGAGTATATCTAACAGTAAGTTATGGAGAAAAGTGCAGGTTAAAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATATCTAACAGTAAGTTATGGAGAAAAGTGCAGGTTAAAGAAGA  800

seq1  TGGGAGTTACAATTTCAAATATGAAGATGAAAAGAGCTCTTATTAGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTACAATTTCAAATATGAAGATGAAAAGAGCTCTTATTAGACCA  850

seq1  ATATTTTAAAATTAAGAAATTTTAATTTTGAGAGCCTCATACATCCATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAATTAAGAAATTTTAATTTTGAGAGCCTCATACATCCATAC  900

seq1  AGTAAAAAATGAACATATTTACAGCCATTTTTCCGTATAAATTCTCCTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAATGAACATATTTACAGCCATTTTTCCGTATAAATTCTCCTTA  950

seq1  TATATTGCCCAAAATGTCCCCTCTCAGCTTCATGTCCTTCCTGTTTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TATATTGCCCAAAATGTCCCCTCTCAGCTTCATGTCCTTCCTG-TTTGA-  998

seq1  TAATCTAATAAATCCAGTTAGCTCTGCTTATATGTATATGAGCATGGGGC  1050
        ||||||||||||||| |||||||||| |||||||||||||||||||| 
seq2  -TATCTAATAAATCCAG-TAGCTCTGCTAATATGTATATGAGCATGGGG-  1045

seq1  CCTCCATAAGCATATGGGAAATCTTCCAGTGGAACAGCCTCAAGCAAACA  1100
      ||| ||| ||||||| ||||||| |||||||||||||| ||||||||   
seq2  CCTTCAT-AGCATAT-GGAAATC-TCCAGTGGAACAGCTTCAAGCAA--C  1090

seq1  AGCAAACAAACAAACAAGCAGACTCTTGTTTCCCTAGCAACTACCAGT  1148
      ||| |||||||||   ||| ||||||||||| ||||||||||||||||
seq2  AGC-AACAAACAA--CAGC-GACTCTTGTTT-CCTAGCAACTACCAGT  1133