BAC Information

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BAC

Clone NameB6Ng01-039F15
Chromosome14 (Build37)
Map Location 104,392,954 - 104,530,617
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039F15.bB6Ng01-039F15.g
ACCDH866645DH866646
length1,0331,037
definitionDH866645|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F15, 5' end.DH866646|Mus musculus domesticus DNA, BAC clone: B6Ng01-039F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,392,954 - 104,393,987)(104,529,581 - 104,530,617)
sequence
gaattctgccatctgtcttggagtatggagcccgtaccccagaaatggtg
gcgcaggagcacagaggaatctgcatgtctggtgacatcatggaggtccc
acgccaacctcagactttctgaccagggcggcttgtgtgtgagagaagaa
gctcaggcattttacagccgctgttattttagggctgttattcttaaacg
ataaaagatctttcagaaacaaaataattgtaatgttgaggaggaaggag
gtgaagtgtggcacagcatactagctttgccataaccaactattcaggcc
atgcactagccttgtgcatggctaatgcaatcactattcatgcttacaga
agataaggccagatggcacactgcaatgcttacttagttcacagagccac
ttaaacaagttctattaaaacggatctctacgtcatgctttctctcttta
ctctatttgctacttataagaatttgttcttagttctacgtttcttgtct
taattcaaagcctgccttagagtcttctgatcaaaggtattttggaagat
agtatgcatcgatttatgtgacacttttccaagaagattgtacatatgtt
tgtaataagattggttattctttgcaatatttaactttatttttaaatct
gtttttagtgggttctaagtatcttggtggtgtcatttctgtatgtacaa
ccatatctaaacttgttttcttgctttgtgagtggtgttggttctctcgt
ggttggcctgaaagtgttagcaaagcttaccttgcttagaaagcaggctt
tgctcaatgctttagtttttttttttttttcttatttaggtgtattttat
gattattttcatgccagatgactggtcaagtctgaagaatgtatttgcct
gagtgaaaacagaggtcaatttatcagcatggtctaagctcaagtcatta
attaataaggaattacccactgaaagcactaatttgtaatcgcattagat
gcgaaaactttttggtttattctacccatcttg
gaattcaacaggttataaaaacaataggtaagaggacatggaatttgaag
gattgatggttgggaggcaaggagagatgggaagagagaatttgagatga
gaatatgatcaagacacattataaacatgtatgaaatttctaaagaataa
atgtaaaaataaatggaaaaagtagcatagaaaaatgcctttaatatact
tcaatcctgctacaacaaagctgaatctgtttaaaacaaacaaacaaaca
aaaatcaattttagtagtatatctttccaaaaccagccaaacaaaaacag
acaaagccatagtcaataagccatcataaaatgctatcactgaagtgagg
accatgctctgcttgggccactcctcatggcttatatagatggaattatg
caatgtgtatattttgtatgtgataactacatatgtactaggtatgtatt
ctgttgcatctggcttctttggctcaattttatgttttgtgagatttaac
aaagtggttgcatgtaacttcatgtcttctacctactttcactgacgtgt
ttcgtttcttaaacaaatcaccaaatttaatacattatgtgtacaaaaaa
atgaaattcctcagtcttaggttgtgtacccgtttggacacatcacatct
tacaaagagaattggcatctaaatatgaataagcaattgaacttgtcaga
cattttagttatactagtgtctttccccaccagtgtcgtgtggcatagca
gtgggtattcttttaaagatttatttctttttacatttttttctttttac
attttatttattggttctttatgaaggtcacatcttgcaccccaggtccc
ctcatttccccatcccttcgcatctgtcctctgctcttgcacctttcccc
aagaaagtaaacaaaaactacaggaaaaaagaagaaagtaaacagataag
catagaaaacatagagatgtggcatgtcacagtgttgtcccacagtattc
ccctctgtccacatacctttactagtaatgtcattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104392954_104393987
seq2: B6Ng01-039F15.b_46_1078

seq1  GAATTCTGCCATCTGTCTTGGAGTATGGAGCCCGTACCCCAGAAATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCATCTGTCTTGGAGTATGGAGCCCGTACCCCAGAAATGGTG  50

seq1  GCGCAGGAGCACAGAGGAATCTGCATGTCTGGTGACATCATGGAGGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGAGCACAGAGGAATCTGCATGTCTGGTGACATCATGGAGGTCCC  100

seq1  ACGCCAACCTCAGACTTTCTGACCAGGGCGGCTTGTGTGTGAGAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAACCTCAGACTTTCTGACCAGGGCGGCTTGTGTGTGAGAGAAGAA  150

seq1  GCTCAGGCATTTTACAGCCGCTGTTATTTTAGGGCTGTTATTCTTAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGCATTTTACAGCCGCTGTTATTTTAGGGCTGTTATTCTTAAACG  200

seq1  ATAAAAGATCTTTCAGAAACAAAATAATTGTAATGTTGAGGAGGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATCTTTCAGAAACAAAATAATTGTAATGTTGAGGAGGAAGGAG  250

seq1  GTGAAGTGTGGCACAGCATACTAGCTTTGCCATAACCAACTATTCAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGTGGCACAGCATACTAGCTTTGCCATAACCAACTATTCAGGCC  300

seq1  ATGCACTAGCCTTGTGCATGGCTAATGCAATCACTATTCATGCTTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTAGCCTTGTGCATGGCTAATGCAATCACTATTCATGCTTACAGA  350

seq1  AGATAAGGCCAGATGGCACACTGCAATGCTTACTTAGTTCACAGAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGCCAGATGGCACACTGCAATGCTTACTTAGTTCACAGAGCCAC  400

seq1  TTAAACAAGTTCTATTAAAACGGATCTCTACGTCATGCTTTCTCTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAAGTTCTATTAAAACGGATCTCTACGTCATGCTTTCTCTCTTTA  450

seq1  CTCTATTTGCTACTTATAAGAATTTGTTCTTAGTTCTACGTTTCTTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTGCTACTTATAAGAATTTGTTCTTAGTTCTACGTTTCTTGTCT  500

seq1  TAATTCAAAGCCTGCCTTAGAGTCTTCTGATCAAAGGTATTTTGGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAAAGCCTGCCTTAGAGTCTTCTGATCAAAGGTATTTTGGAAGAT  550

seq1  AGTATGCATCGATTTATGTGACACTTTTCCAAGAAGATTGTACATATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCATCGATTTATGTGACACTTTTCCAAGAAGATTGTACATATGTT  600

seq1  TGTAATAAGATTGGTTATTCTTTGCAATATTTAACTTTATTTTTAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGATTGGTTATTCTTTGCAATATTTAACTTTATTTTTAAATCT  650

seq1  GTTTTTAGTGGGTTCTAAGTATCTTGGTGGTGTCATTTCTGTATGTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTGGGTTCTAAGTATCTTGGTGGTGTCATTTCTGTATGTACAA  700

seq1  CCATATCTAAACTTGTTTTCTTGCTTTGTGAGTGGTGTTGGTTCTCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTAAACTTGTTTTCTTGCTTTGTGAGTGGTGTTGGTTCTCTCGT  750

seq1  GGTTGGCCTGAAAGTGTTAGCAAAGCTTACCTTGCTTAGAAAGCAGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCTGAAAGTGTTAGCAAAGCTTACCTTGCTTAGAAAGCAGGCTT  800

seq1  TGCTCAATGCTTTAGTTTTTTTTTTTTTTTCTTATTTAGGTGTATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAATGCTTTAGTTTTTTTTTTTTTTTCTTATTTAGGTGTATTTTAT  850

seq1  GATTATTTTCATGCCAGATGACTGGTCAAGTCTGAAGAATGTAATTTGCC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATTATTTTCATGCCAGATGACTGGTCAAGTCTGAAGAATGT-ATTTGCC  899

seq1  TGAGTG-AAACAGAGGTCAA-TTATCAGCCATGGTCTAAGCTCAAGTCAT  948
      |||||| ||||||||||||| ||||||| |||||||||||||||||||||
seq2  TGAGTGAAAACAGAGGTCAATTTATCAG-CATGGTCTAAGCTCAAGTCAT  948

seq1  TAATTAAT-AGGAATTACCCA-TGAAAGCACTAATTTGTAAATCGCATTA  996
      |||||||| |||||||||||| ||||||||||||||||| ||||||||| 
seq2  TAATTAATAAGGAATTACCCACTGAAAGCACTAATTTGT-AATCGCATT-  996

seq1  AGATGCGAAATCTTTTATGTTTAATCTTACCCATCTTG  1034
      |||||||||| |||||  ||||| || |||||||||||
seq2  AGATGCGAAAACTTTTTGGTTTATTC-TACCCATCTTG  1033

seq1: chr14_104529581_104530617
seq2: B6Ng01-039F15.g_66_1092 (reverse)

seq1  TACTAGTAAAGGTATGTGGACAGAGGGGAATACTGTGGGAC-ACACTGTG  49
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACTAGTAAAGGTATGTGGACAGAGGGGAATACTGTGGGACAACACTGTG  50

seq1  ACATGCCACATCTTCTATGTTTTCTATGCTTTATCTTGTTTTACTTTCTT  99
      |||||||||||| |||||||||||||||| ||||||   ||||||||| |
seq2  ACATGCCACATC-TCTATGTTTTCTATGC-TTATCT--GTTTACTTTC-T  95

seq1  TCTTTTTTTCCCTGTTAGTTTTTTGTTTACTTTTCTTGGGGAAAGGTTGC  149
      ||||||||  |||| ||| ||||||||||| ||||||||||||||| |||
seq2  TCTTTTTT--CCTG-TAG-TTTTTGTTTAC-TTTCTTGGGGAAAGG-TGC  139

seq1  AAGAGCAGAGGACAGATGCGAAGGGATGGGGAAATGAGGGGACCTGGGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGAGGACAGATGCGAAGGGATGGGGAAATGAGGGGACCTGGGGT  189

seq1  GCAAGATGTGACCTTCATAAAGAACCAATAAATAAAATGTAAAAAGAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGTGACCTTCATAAAGAACCAATAAATAAAATGTAAAAAGAAAA  239

seq1  AAATGTAAAAAGAAATAAATCTTTAAAAGAATACCCACTGCTATGCCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAAAAGAAATAAATCTTTAAAAGAATACCCACTGCTATGCCACA  289

seq1  CGACACTGGTGGGGAAAGACACTAGTATAACTAAAATGTCTGACAAGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACTGGTGGGGAAAGACACTAGTATAACTAAAATGTCTGACAAGTTC  339

seq1  AATTGCTTATTCATATTTAGATGCCAATTCTCTTTGTAAGATGTGATGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTATTCATATTTAGATGCCAATTCTCTTTGTAAGATGTGATGTG  389

seq1  TCCAAACGGGTACACAACCTAAGACTGAGGAATTTCATTTTTTTGTACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACGGGTACACAACCTAAGACTGAGGAATTTCATTTTTTTGTACAC  439

seq1  ATAATGTATTAAATTTGGTGATTTGTTTAAGAAACGAAACACGTCAGTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATTAAATTTGGTGATTTGTTTAAGAAACGAAACACGTCAGTGA  489

seq1  AAGTAGGTAGAAGACATGAAGTTACATGCAACCACTTTGTTAAATCTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGTAGAAGACATGAAGTTACATGCAACCACTTTGTTAAATCTCAC  539

seq1  AAAACATAAAATTGAGCCAAAGAAGCCAGATGCAACAGAATACATACCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAATTGAGCCAAAGAAGCCAGATGCAACAGAATACATACCTA  589

seq1  GTACATATGTAGTTATCACATACAAAATATACACATTGCATAATTCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATGTAGTTATCACATACAAAATATACACATTGCATAATTCCATC  639

seq1  TATATAAGCCATGAGGAGTGGCCCAAGCAGAGCATGGTCCTCACTTCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGCCATGAGGAGTGGCCCAAGCAGAGCATGGTCCTCACTTCAGT  689

seq1  GATAGCATTTTATGATGGCTTATTGACTATGGCTTTGTCTGTTTTTGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATTTTATGATGGCTTATTGACTATGGCTTTGTCTGTTTTTGTTT  739

seq1  GGCTGGTTTTGGAAAGATATACTACTAAAATTGATTTTTGTTTGTTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTTTGGAAAGATATACTACTAAAATTGATTTTTGTTTGTTTGTT  789

seq1  TGTTTTAAACAGATTCAGCTTTGTTGTAGCAGGATTGAAGTATATTAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAACAGATTCAGCTTTGTTGTAGCAGGATTGAAGTATATTAAAG  839

seq1  GCATTTTTCTATGCTACTTTTTCCATTTATTTTTACATTTATTCTTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTATGCTACTTTTTCCATTTATTTTTACATTTATTCTTTAGA  889

seq1  AATTTCATACATGTTTATAATGTGTCTTGATCATATTCTCATCTCAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATACATGTTTATAATGTGTCTTGATCATATTCTCATCTCAAATT  939

seq1  CTCTCTTCCCATCTCTCCTTGCCTCCCAACCATCAATCCTTCAAATTCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCCCATCTCTCCTTGCCTCCCAACCATCAATCCTTCAAATTCCA  989

seq1  TGTCCTCTTACCTATTGTTTTTATAACCTGTTGAATTC  1037
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTACCTATTGTTTTTATAACCTGTTGAATTC  1027