BAC Information

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BAC

Clone NameB6Ng01-039N19
Chromosome14 (Build37)
Map Location 65,789,126 - 65,946,822
singlet/doubletdoublet
Overlap geneFzd3, LOC668286, Fbxo16
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
Downstream geneZfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039N19.bB6Ng01-039N19.g
ACCDH867004DH867005
length1,0591,027
definitionDH867004|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N19, 5' end.DH867005|Mus musculus domesticus DNA, BAC clone: B6Ng01-039N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,945,756 - 65,946,822)(65,789,126 - 65,790,160)
sequence
gaattccatcctagagggtgggtagttgagatttatgactacaactgaag
atggacagagagaaatgggaggaagaccacaaacagaagaatcaaaactg
gaaaggacagacatcaaaattcacgtgggaatggaaacgtgtgtggttta
aacatttgagacgacactgggctttatctgaaggctccagtttcatcttt
tttttttttttttatgtctctttaagagattctgggcatagcgtggtggc
gcacacctttaatcccaacacttgggaggcagagacaggcgaatttctga
gttcgaggccagcctggtctacaaagtgagttccaggacagccagtgcta
tacagagaaaccctgtctcgaaaaacaaaaaaaaaacaaaaacaaaaaca
aaacaaaccaaaaaaaaccaaaaaacacaaaacccaacaacaacaaaaga
attagaaaagagaaaaaagaaaaaaagaaaaaatttaaaatataaaaaag
aaaaggaagaaattatctgataatccgaaatttatttatttatttgtttg
ttttgagacggtctcactaagtaactctgactgtcctagaattcactatg
taggccaggctggtagagatctcatgctgggactaaaggtgtatgccact
atgcccagctaattccagttcttgacagcagtcttcagccgctctctgaa
agcccatgggaacaccagatctaatccttcccactccctgccaccttctc
tgccctctaggctgtggggagaaatgggaggatttccaggccaaatactg
aatgaggaggccgtgtccactcaggaagagtggctatggagcaactgtga
ggtgggaagaggtgttctttggagtcaaactctcgtctgacccaggcctg
ctgttagacatctttgcttgggcttgctactccatcctaattccgcaacg
gtagataaaggtgccaggtcctccctctgcccctccttccttctcccccc
ccccccccctaaggtcttgtggtaaccatatctaagtatggcaggggctt
ctgaaacct
gaattctttagggatagcacacaatgcaataacagtctcatcgtttagct
atgagtatttgtgtgtgtgtgtgcgcgcgcgcgcgcaaatttcctcatat
cacgaatccaactaacccgccttgaaaattagaagtgttatttactgaat
ccgcatcaacatgtaacggttattaatattcggtttcacattgtgactaa
ttggccacagagaagagtgggtagagcatggggcagaaagccaaagacgg
gagttttgagaagcaaaggtgtggaagaacagaaagggagagaaggagag
cgctgtagcaggctcagaacccaaccaaaggcgggcaaagtcaagagcaa
tggcccgccacctattccacatcacagcccccacagggatctgagaagcg
gtgggtcttcacccacacaatagatgtgtttctatattggtgggctctgc
gccaccaatccaaacagcacaacaaagcaagtgggaggagacaatgaggc
ttgaggtggagagacaactgaaagaaccacaaaggcagacagcaagcagc
agagaaggggcacagcagtctccaaaccgccccccaccaccaaggttcat
ctaagcgcaatcctgagctaaacagaagacaggcagaagacagggaaagt
ctctccgtgcctttccattgctctagcctgtcccctctctcatcacacat
acttattggctagaactgtatgtatagatagatgcctgctctcttggcag
tccacccggcgtactcccctggcctaggctagcaaagccctttggttttc
tttgtacaacgaagagactcaatagatggaaatggacgtttttatttatt
tattattgttgttgttgtattgtgctgtttgttttggagacaggtttctc
tgtgtagtcctggctgttctggaacttactctgtagctggttctcgaact
tagaaatccgcctgctctgctctcaagtgctggattaaaggtgtgtgcac
actgcccagctgaaaatggacatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65945756_65946822
seq2: B6Ng01-039N19.b_47_1105 (reverse)

seq1  AGGTTTCAGAAGCCCTTGCC-TACTCTGGTTTGGTTTCCACAAGACCCTT  49
      ||||||||||||||| |||| ||||  | | ||||| |||||||| ||||
seq2  AGGTTTCAGAAGCCCCTGCCATACTTAGATATGGTTACCACAAGA-CCTT  49

seq1  AGTGGGGGGGGGGGGGGGAGAAAGGAAGGAGGGGCAGAGGGAGGACCTGG  99
      |  ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  A--GGGGGGGGGGGGGGGAG-AAGGAAGGAGGGGCAGAGGGAGGACCTGG  96

seq1  CACCTTTATCTTACCGTTGCGGAATTTAGGATGGAGTAGCAAGCCCAAGC  149
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CACCTTTATC-TACCGTTGCGGAA-TTAGGATGGAGTAGCAAGCCCAAGC  144

seq1  AATGACTGTCTAACAGCAGGCCTGGGTCATGACTGAGAGTTTGACTCCAA  199
      || || ||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AAAGA-TGTCTAACAGCAGGCCTGGGTCA-GAC-GAGAGTTTGACTCCAA  191

seq1  AGAACACCTCTTCCCACCTCACAGTTGCTCCATAGCCACTCTTCCTGAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCTCTTCCCACCTCACAGTTGCTCCATAGCCACTCTTCCTGAGT  241

seq1  GGACACGGCCTCCTCATTCAGTATTTGGCCTGGAAATCCTCCCATTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGCCTCCTCATTCAGTATTTGGCCTGGAAATCCTCCCATTTCTC  291

seq1  CCCACAGCCTAGAGGGCAGAGAAGGTGGCAGGGAGTGGGAAGGATTAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTAGAGGGCAGAGAAGGTGGCAGGGAGTGGGAAGGATTAGAT  341

seq1  CTGGTGTTCCCATGGGCTTTCAGAGAGCGGCTGAAGACTGCTGTCAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCCCATGGGCTTTCAGAGAGCGGCTGAAGACTGCTGTCAAGAA  391

seq1  CTGGAATTAGCTGGGCATAGTGGCATACACCTTTAGTCCCAGCATGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAGCTGGGCATAGTGGCATACACCTTTAGTCCCAGCATGAGAT  441

seq1  CTCTACCAGCCTGGCCTACATAGTGAATTCTAGGACAGTCAGAGTTACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAGCCTGGCCTACATAGTGAATTCTAGGACAGTCAGAGTTACTT  491

seq1  AGTGAGACCGTCTCAAAACAAACAAATAAATAAATAAATTTCGGATTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACCGTCTCAAAACAAACAAATAAATAAATAAATTTCGGATTATC  541

seq1  AGATAATTTCTTCCTTTTCTTTTTTATATTTTAAATTTTTTCTTTTTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTCTTCCTTTTCTTTTTTATATTTTAAATTTTTTCTTTTTTTC  591

seq1  TTTTTTCTCTTTTCTAATTCTTTTGTTGTTGTTGGGTTTTGTGTTTTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTTTCTAATTCTTTTGTTGTTGTTGGGTTTTGTGTTTTTTG  641

seq1  GTTTTTTTTGGTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTTGTTTTTCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTGGTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTTGTTTTTCG  691

seq1  AGACAGGGTTTCTCTGTATAGCACTGGCTGTCCTGGAACTCACTTTGTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGTTTCTCTGTATAGCACTGGCTGTCCTGGAACTCACTTTGTAG  741

seq1  ACCAGGCTGGCCTCGAACTCAGAAATTCGCCTGTCTCTGCCTCCCAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCGAACTCAGAAATTCGCCTGTCTCTGCCTCCCAAGTG  791

seq1  TTGGGATTAAAGGTGTGCGCCACCACGCTATGCCCAGAATCTCTTAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTAAAGGTGTGCGCCACCACGCTATGCCCAGAATCTCTTAAAGA  841

seq1  GACATAAAAAAAAAAAAAAAAGATGAAACTGGAGCCTTCAGATAAAGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAAAAAAAAAAAAAAGATGAAACTGGAGCCTTCAGATAAAGCCC  891

seq1  AGTGTCGTCTCAAATGTTTAAACCACACACGTTTCCATTCCCACGTGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGTCTCAAATGTTTAAACCACACACGTTTCCATTCCCACGTGAAT  941

seq1  TTTGATGTCTGTCCTTTCCAGTTTTGATTCTTCTGTTTGTGGTCTTCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTCTGTCCTTTCCAGTTTTGATTCTTCTGTTTGTGGTCTTCCTC  991

seq1  CCATTTCTCTCTGTCCATCTTCAGTTGTAGTCATAAATCTCAACTACCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTCTGTCCATCTTCAGTTGTAGTCATAAATCTCAACTACCCA  1041

seq1  CCCTCTAGGATGGAATTC  1067
      ||||||||||||||||||
seq2  CCCTCTAGGATGGAATTC  1059

seq1: chr14_65789126_65790160
seq2: B6Ng01-039N19.g_67_1093

seq1  GAATTCTTTAGGGATAGCACACAATGCAATAACAGTCTCATCGTTTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGGATAGCACACAATGCAATAACAGTCTCATCGTTTAGCT  50

seq1  ATGAGTATTTGTGTGTGTGTGTGCGCGCGCGCGCGCAAATTTCCTCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATTTGTGTGTGTGTGTGCGCGCGCGCGCGCAAATTTCCTCATAT  100

seq1  CACGAATCCAACTAACCCGCCTTGAAAATTAGAAGTGTTATTTACTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAATCCAACTAACCCGCCTTGAAAATTAGAAGTGTTATTTACTGAAT  150

seq1  CCGCATCAACATGTAACGGTTATTAATATTCGGTTTCACATTGTGACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATCAACATGTAACGGTTATTAATATTCGGTTTCACATTGTGACTAA  200

seq1  TTGGCCACAGAGAAGAGTGGGTAGAGCATGGGGCAGAAAGCCAAAGACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCACAGAGAAGAGTGGGTAGAGCATGGGGCAGAAAGCCAAAGACGG  250

seq1  GAGTTTTGAGAAGCAAAGGTGTGGAAGAACAGAAAGGGAGAGAAGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGAGAAGCAAAGGTGTGGAAGAACAGAAAGGGAGAGAAGGAGAG  300

seq1  CGCTGTAGCAGGCTCAGAACCCAACCAAAGGCGGGCAAAGTCAAGAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTAGCAGGCTCAGAACCCAACCAAAGGCGGGCAAAGTCAAGAGCAA  350

seq1  TGGCCCGCCACCTATTCCACATCACAGCCCCCACAGGGATCTGAGAAGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCGCCACCTATTCCACATCACAGCCCCCACAGGGATCTGAGAAGCG  400

seq1  GTGGGTCTTCACCCACACAATAGATGTGTTTCTATATTGGTGGGCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTTCACCCACACAATAGATGTGTTTCTATATTGGTGGGCTCTGC  450

seq1  GCCACCAATCCAAACAGCACAACAAAGCAAGTGGGAGGAGACAATGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAATCCAAACAGCACAACAAAGCAAGTGGGAGGAGACAATGAGGC  500

seq1  TTGAGGTGGAGAGACAACTGAAAGAACCACAAAGGCAGACAGCAAGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGGAGAGACAACTGAAAGAACCACAAAGGCAGACAGCAAGCAGC  550

seq1  AGAGAAGGGGCACAGCAGTCTCCAAACCGCCCCCCACCACCAAGGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGGGCACAGCAGTCTCCAAACCGCCCCCCACCACCAAGGTTCAT  600

seq1  CTAAGCGCAATCCTGAGCTAAACAGAAGACAGGCAGAAGACAGGGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCGCAATCCTGAGCTAAACAGAAGACAGGCAGAAGACAGGGAAAGT  650

seq1  CTCTCCGTGCCTTTCCATTGCTCTAGCCTGTCCCCTCTCTCATCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGTGCCTTTCCATTGCTCTAGCCTGTCCCCTCTCTCATCACACAT  700

seq1  ACTTATTGGCTAGAACTGTATGTATAGATAGATGCCTGCTCTCTTGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGGCTAGAACTGTATGTATAGATAGATGCCTGCTCTCTTGGCAG  750

seq1  TCCACCCGGCGTACTCCCCTGGCCTAGGCTAGCAAAGCCC-TTGGTTTTC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCACCCGGCGTACTCCCCTGGCCTAGGCTAGCAAAGCCCTTTGGTTTTC  800

seq1  TTTGTACAACGAAGAGACTCAATAGATGGAAATGGACGTTTTTATTTA-T  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGTACAACGAAGAGACTCAATAGATGGAAATGGACGTTTTTATTTATT  850

seq1  TATTATTGTTGTTGTTGTATTGTTGCTGTTTTGTTTTTGGAGACAGGGTT  898
      |||||||||||||||||||||| ||||||||   ||||||||||| ||||
seq2  TATTATTGTTGTTGTTGTATTG-TGCTGTTT--GTTTTGGAGACA-GGTT  896

seq1  TCTCTGTGTAGTCCTGGCTGTTCTGGAACTTACTCTGTAGGCTGG-TCTC  947
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TCTCTGTGTAGTCCTGGCTGTTCTGGAACTTACTCTGTA-GCTGGTTCTC  945

seq1  GAACTTAGAAATCCGCCTGTCTCTGCCTCTCAAGTGCTGGGATTTAAAGG  997
      ||||||||||||||||||| ||||| ||||||||||||||   |||||||
seq2  GAACTTAGAAATCCGCCTG-CTCTG-CTCTCAAGTGCTGG--ATTAAAGG  991

seq1  TGTGTGCCACCACTGCCCAGCTGAAAATGGACATTTTA  1035
      |||||||   ||||||||||||||||||||||||||||
seq2  TGTGTGC--ACACTGCCCAGCTGAAAATGGACATTTTA  1027