BAC Information

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BAC

Clone NameB6Ng01-039O17
Chromosome14 (Build37)
Map Location 28,692,183 - 28,847,399
singlet/doubletdoublet
Overlap geneErc2
Upstream geneDnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039O17.bB6Ng01-039O17.g
ACCDH867047DH867048
length1,1951,095
definitionDH867047|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O17, 5' end.DH867048|Mus musculus domesticus DNA, BAC clone: B6Ng01-039O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,846,185 - 28,847,399)(28,692,183 - 28,693,290)
sequence
gaattctccctgaacattaagaagattggtatctttcctctgtgcagaat
ggaaaaatgcctgagattttgtgtttgtttgcttttgtttttgttttgta
gacccttaaattaaatgtaagtcctgcatgcagtatgtttacaagaggcg
ggattttaaatggatagtgactggccagagagagctcacagaagcacgtc
agagggttttcaaatgcacccttagcagcaacggggtatattataaagta
ctcaattaacgtgtctgaaaagccaaatattcttttaatatataggaaag
acttctggactccatctctgagtgtactagggctataaccaagacagcat
ttgaaagcaatgataaactgtattatttgtctagaattagaaactaaggg
aaaaaacagactcagtgcacgttaacctacatatatttaacgtgacaaca
caaaactccttcaggatcagagactggtagttaagtgaagacaggttatt
attaggagaaataattaagattcaaagacaaacttttaaattcctacgaa
atgacatcagcacattatttagcagaagggagtacctacagcaaaggaat
agaaagtaaatgctttatttgtgctccagaatgtatttgcaggaagatgt
caaagcctgatccttatttcctctgagtgtagacacaaggacattgtaca
gacagtaaaatgcccccatacattcaaaacaactacagtaaattcaccag
aaacatgaaggtagccatattcaaaataaacacacatgagcaaaaacgtc
ctgggtaccagtaactggttagaaaataaacgatgggggttagagagatg
gcttagtggtaaagagcactgactgctcttcaagaggacccgagtttaat
tcccagcaaccacgtggcagctcacaagtgtctgcaactctaggtccagg
ggatctgacaccctcacacatacatatatgcaggcaaaataccaatgcac
gttgtaattaaattaataattaaaatgaaaaaaaaggaaaacgtacctgc
tgcttgtaaccggtttaaaactattgtacatacatgtaaatacatggcca
caatagcttaaggtgaactcacaaaataaattaccagttctggaagaaaa
ggcaaccttaccgtgagaaaaaacactttaaggtggatcggttta
gaattccaggacagccagagctacacagagaaaccctgtctcaaaaaaaa
aaaaaaaaaaattagagtaagttttgggaacccagacagtacaagcctta
gaggtgactcctgaacagaacttaaactcagaggttggaatttcagattg
ctttttgtcttggttttggccaaaaatcaccattgttaactagtgctttg
ccaaatctaaagttaaataaaaggaatagtttgctttgtagaggcagtct
cgtgtcttatgcatctctcatactggcctcaaatttactatgtaaccaag
gatgaccatgaactaacacctgatcctcctgtctctccttccaaaataac
agggttccatgtgccattatgccctgttcagaagtacagaaaagcctctc
tatgagccccctaatttcaggaagatgacataaattagagctgacaagat
attccatacttgtcccttgttccttagggaaactgagggtgaagttctga
actccatttgtttccacaacatttgcatcagctctgcaacggggcttcct
gcaagggtctgcagaatcctgcttctctcaagctttgtgtgagcttcaac
ccactgctctctgggaactctgtgtgccctacagacttgctgatctgtgt
ggaagtctctgcaggtcctggagaagggacctgtatcccgataggggatg
gccctctccagacacaccttccagcacctagttgatcctgggctaaagtc
tgctgagtaaaaggaaagagaagagaatgatgtcactgacgatctatctt
tttgcaggaatctccatggtttaaaattggccctgatttgatctggcagg
tacgccccacatctgtatgtgggaaactgtgtgcacttctctgagaaatt
cctttctcgtggagccctttgctgattctatggccaagaggctttctcac
tcctttccctctgctggagagcagcctgtgaggacagctcaaaagcacgc
ttcattttccctatttaatgctaatgcctttgaagatgtatcttactgac
ttcagtttttctgacccaatttggcatgtgcccaagctttcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28846185_28847399
seq2: B6Ng01-039O17.b_43_1237 (reverse)

seq1  TAAACACGATCCAACTTTTTTAAAGTGTTTTTTTTCTACAGTAAAGTTTT  50
      ||||| ||||||| |    |||||||||||||| || || |||| |  ||
seq2  TAAAC-CGATCCACC----TTAAAGTGTTTTTTCTC-ACGGTAAGG--TT  42

seq1  GACATTTTTCTATTACAGGACTGGGTTATTTATTTTTGTAGTATCTACTT  100
      | |  |||||  || ||| ||| ||| |||||||||   ||| ||  |||
seq2  GCC--TTTTC--TTCCAGAACT-GGTAATTTATTTTGTGAGT-TCACCTT  86

seq1  TTAAAGCTATTGT-GACATGTATGTAACATGTATGTACACATAGTTTTTA  149
         |||||||||| | ||||||| | ||||||||||||| |||||||| |
seq2  ---AAGCTATTGTGGCCATGTAT-TTACATGTATGTACA-ATAGTTTTAA  131

seq1  AACCGTTAC-AGCAGCAGGTACGTTTTTCCTTTTATTTTCATTTTTAATT  198
      | | ||||| ||||||||||||| |||||||||| |||||| ||||||||
seq2  ACCGGTTACAAGCAGCAGGTACG-TTTTCCTTTT-TTTTCA-TTTTAATT  178

seq1  ATTTATTTTAATTAC-ACGTGCATTGGTATTTTGCCTGCATATATGTATG  247
      | ||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  A-TTAATTTAATTACAACGTGCATTGGTATTTTGCCTGCATATATGTATG  227

seq1  TGTGAGGGTGTCAGATCCCCTGGACCTAGAGTTGCAGACACTTGTGAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTGTCAGATCCCCTGGACCTAGAGTTGCAGACACTTGTGAGCT  277

seq1  GCCACGTGGTTGCTGGGAATTAAACTCGGGTCCTCTTGAAGAGCAGTCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTGGTTGCTGGGAATTAAACTCGGGTCCTCTTGAAGAGCAGTCAG  327

seq1  TGCTCTTTACCACTAAGCCATCTCTCTAACCCCCATCGTTTATTTTCTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTACCACTAAGCCATCTCTCTAACCCCCATCGTTTATTTTCTAA  377

seq1  CCAGTTACTGGTACCCAGGACGTTTTTGCTCATGTGTGTTTATTTTGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTACTGGTACCCAGGACGTTTTTGCTCATGTGTGTTTATTTTGAAT  427

seq1  ATGGCTACCTTCATGTTTCTGGTGAATTTACTGTAGTTGTTTTGAATGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTACCTTCATGTTTCTGGTGAATTTACTGTAGTTGTTTTGAATGTA  477

seq1  TGGGGGCATTTTACTGTCTGTACAATGTCCTTGTGTCTACACTCAGAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCATTTTACTGTCTGTACAATGTCCTTGTGTCTACACTCAGAGGA  527

seq1  AATAAGGATCAGGCTTTGACATCTTCCTGCAAATACATTCTGGAGCACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGATCAGGCTTTGACATCTTCCTGCAAATACATTCTGGAGCACAA  577

seq1  ATAAAGCATTTACTTTCTATTCCTTTGCTGTAGGTACTCCCTTCTGCTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATTTACTTTCTATTCCTTTGCTGTAGGTACTCCCTTCTGCTAA  627

seq1  ATAATGTGCTGATGTCATTTCGTAGGAATTTAAAAGTTTGTCTTTGAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGCTGATGTCATTTCGTAGGAATTTAAAAGTTTGTCTTTGAATC  677

seq1  TTAATTATTTCTCCTAATAATAACCTGTCTTCACTTAACTACCAGTCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTTCTCCTAATAATAACCTGTCTTCACTTAACTACCAGTCTCT  727

seq1  GATCCTGAAGGAGTTTTGTGTTGTCACGTTAAATATATGTAGGTTAACGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAAGGAGTTTTGTGTTGTCACGTTAAATATATGTAGGTTAACGT  777

seq1  GCACTGAGTCTGTTTTTTCCCTTAGTTTCTAATTCTAGACAAATAATACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAGTCTGTTTTTTCCCTTAGTTTCTAATTCTAGACAAATAATACA  827

seq1  GTTTATCATTGCTTTCAAATGCTGTCTTGGTTATAGCCCTAGTACACTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCATTGCTTTCAAATGCTGTCTTGGTTATAGCCCTAGTACACTCA  877

seq1  GAGATGGAGTCCAGAAGTCTTTCCTATATATTAAAAGAATATTTGGCTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAGTCCAGAAGTCTTTCCTATATATTAAAAGAATATTTGGCTTT  927

seq1  TCAGACACGTTAATTGAGTACTTTATAATATACCCCGTTGCTGCTAAGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACGTTAATTGAGTACTTTATAATATACCCCGTTGCTGCTAAGGG  977

seq1  TGCATTTGAAAACCCTCTGACGTGCTTCTGTGAGCTCTCTCTGGCCAGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGAAAACCCTCTGACGTGCTTCTGTGAGCTCTCTCTGGCCAGTC  1027

seq1  ACTATCCATTTAAAATCCCGCCTCTTGTAAACATACTGCATGCAGGACTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCATTTAAAATCCCGCCTCTTGTAAACATACTGCATGCAGGACTT  1077

seq1  ACATTTAATTTAAGGGTCTACAAAACAAAAACAAAAGCAAACAAACACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATTTAAGGGTCTACAAAACAAAAACAAAAGCAAACAAACACAA  1127

seq1  AATCTCAGGCATTTTTCCATTCTGCACAGAGGAAAGATACCAATCTTCTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGGCATTTTTCCATTCTGCACAGAGGAAAGATACCAATCTTCTT  1177

seq1  AATGTTCAGGGAGAATTC  1215
      ||||||||||||||||||
seq2  AATGTTCAGGGAGAATTC  1195

seq1: chr14_28692183_28693290
seq2: B6Ng01-039O17.g_67_1161

seq1  GAATTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAA  50

seq1  AAAAAAAAAAATTAGAGTAAGTTTTGGGAACCCAGACAGTACAAGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAATTAGAGTAAGTTTTGGGAACCCAGACAGTACAAGCCTTA  100

seq1  GAGGTGACTCCTGAACAGAACTTAAACTCAGAGGTTGGAATTTCAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACTCCTGAACAGAACTTAAACTCAGAGGTTGGAATTTCAGATTG  150

seq1  CTTTTTGTCTTGGTTTTGGCCAAAAATCACCATTGTTAACTAGTGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTGGTTTTGGCCAAAAATCACCATTGTTAACTAGTGCTTTG  200

seq1  CCAAATCTAAAGTTAAATAAAAGGAATAGTTTGCTTTGTAGAGGCAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTAAAGTTAAATAAAAGGAATAGTTTGCTTTGTAGAGGCAGTCT  250

seq1  CGTGTCTTATGCATCTCTCATACTGGCCTCAAATTTACTATGTAACCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCTTATGCATCTCTCATACTGGCCTCAAATTTACTATGTAACCAAG  300

seq1  GATGACCATGAACTAACACCTGATCCTCCTGTCTCTCCTTCCAAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCATGAACTAACACCTGATCCTCCTGTCTCTCCTTCCAAAATAAC  350

seq1  AGGGTTCCATGTGCCATTATGCCCTGTTCAGAAGTACAGAAAAGCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCCATGTGCCATTATGCCCTGTTCAGAAGTACAGAAAAGCCTCTC  400

seq1  TATGAGCCCCCTAATTTCAGGAAGATGACATAAATTAGAGCTGACAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCCCCCTAATTTCAGGAAGATGACATAAATTAGAGCTGACAAGAT  450

seq1  ATTCCATACTTGTCCCTTGTTCCTTAGGGAAACTGAGGGTGAAGTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATACTTGTCCCTTGTTCCTTAGGGAAACTGAGGGTGAAGTTCTGA  500

seq1  ACTCCATTTGTTTCCACAACATTTGCATCAGCTCTGCAACGGGGCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTTGTTTCCACAACATTTGCATCAGCTCTGCAACGGGGCTTCCT  550

seq1  GCAAGGGTCTGCAGAATCCTGCTTCTCTCAAGCTTTGTGTGAGCTTCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTCTGCAGAATCCTGCTTCTCTCAAGCTTTGTGTGAGCTTCAAC  600

seq1  CCACTGCTCTCTGGGAACTCTGTGTGCCCTACAGACTTGCTGATCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCTCTCTGGGAACTCTGTGTGCCCTACAGACTTGCTGATCTGTGT  650

seq1  GGAAGTCTCTGCAGGTCCTGGAGAAGGGACCTGTATCCCGATAGGGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTCTGCAGGTCCTGGAGAAGGGACCTGTATCCCGATAGGGGATG  700

seq1  GCCCTCTCCAGACACACCTTCCAGCACCTAGTTGATCCTGGGCTAAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCAGACACACCTTCCAGCACCTAGTTGATCCTGGGCTAAAGTC  750

seq1  TGCTGAGTAAAAGG-AAGAGAAGAGAATGATGTCACTGACGATCTATCTT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTAAAAGGAAAGAGAAGAGAATGATGTCACTGACGATCTATCTT  800

seq1  TTTGCAGGAATCTCCATGGTTTAAAATTGGCCCTGATTTGATCTGGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGAATCTCCATGGTTTAAAATTGGCCCTGATTTGATCTGGCAGG  850

seq1  TACGCCCCACATCTGTATGTGGGAAACTGTGTGCACTTCTCTGAGAAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCCCACATCTGTATGTGGGAAACTGTGTGCACTTCTCTGAGAAATT  900

seq1  CCTTTCTCGTGGAGCCCCTTTGCTGATTCTATGGCCAAAGAGGCTTTCTC  949
      |||||||||||||| ||||||||||||||||||||| |||||||||||| 
seq2  CCTTTCTCGTGGAG-CCCTTTGCTGATTCTATGGCC-AAGAGGCTTTCT-  947

seq1  CACTCCTTTCCCCTCTGCTGGAGAGCAGCCTGTGAGGACAGCTCAAAAGC  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  CACTCCTTT-CCCTCTGCTGGAGAGCAGCCTGTGAGGACAGCTCAAAAG-  995

seq1  CACGCTTTCATTTTCCCTATTTAATGCTAATGCCTTTGAAAGAATGTATT  1049
      ||||| ||||||||||||||||||||||||||||||||||   ||||| |
seq2  CACGC-TTCATTTTCCCTATTTAATGCTAATGCCTTTGAA--GATGTA-T  1041

seq1  CTTAACCTGACTTCAGTATATCTGACACAATATGAGCATGTTGCCCAAAG  1099
      ||||  ||||||||||| | |||||| |||| || ||||| ||||| |||
seq2  CTTA--CTGACTTCAGTTTTTCTGACCCAATTTG-GCATG-TGCCC-AAG  1086

seq1  CTTTCACTT  1108
      |||||||||
seq2  CTTTCACTT  1095