BAC Information

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BAC

Clone NameB6Ng01-039P15
Chromosome14 (Build37)
Map Location 123,974,012 - 124,110,839
singlet/doubletdoublet
Overlap geneVgcnl1, Itgbl1, LOC668700
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneFgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P15.bB6Ng01-039P15.g
ACCDH867085DH867086
length1,2101,083
definitionDH867085|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P15, 5' end.DH867086|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,974,012 - 123,975,235)(124,109,745 - 124,110,839)
sequence
gaattcagataccacatgtttatctgtgtaggctttgctcttacctgcaa
acctgctatttttgtctatacgtctcagagagtaaatggttaaacaacca
ctcaggctctcatcacaattttaaaatatcctttgttcccatttaaaaaa
taaaagaaaggctctaactgtgaaaattgctacttgattgagtcagaaaa
atacagttttaggcagacacactgcttatttcttttacatcacattctca
tttgtagacaaatgattcatccttctctaagtctaatctgatgctatttt
agttttgacacctacaaaatcagtgcagactggggaatgggcctcaggat
ttcagagtgaggttttaaggctttttccaagctctccatttgccagtcat
atgatcaaaaatgttctaaggatctctaaactctgtttcctcatctgaga
gacaggaaaacagtactgatggaaaggcatatgtgaaaagtatgtagagt
aaactaggggttctagcagttcatagtataggtacttaattgtgtcttta
aaatgattacattaattacagtaaaatatgacctaaatgtcacaaaaaat
gtctacatgatattggaaacatcttgtttatagagttgagcagttggaag
acactgtgcatatgacctagtttgtcattgttggcattcagaaaagtcag
ggtgaatgtcaaagatgaaaaatggactagtgcttcatccactccagtag
tgaccctcgtgacaaggccaaaagcctggacgcagacccgaggcaaaaag
ttcagggaaacttaatctcctggaattatggcatcctgtaataacgaatg
ctccaaatctgtccttgctttagtcagtaaacaggtctgtgtgctttccc
tcaatattgctttatcataagtgcctctaaggattgattttgacatatag
ctaagttagattcttcaccagtcctaggcagtccttgagccaaccctggg
catggataactgagtcactgtcctacacaggaatttatataatataattt
attaaggtatttttcttcatttacatttccaatgctatcccaaaatccct
atacctgccccaatttacaatatccagaagaaaggatgggtgtgggtcta
ggagaactagagtagatacttagactgtgatagctgagttacacccatac
accggaattt
gaattccctgccatttgctggtgttgatcttccttactccagacgaagag
acactttaaatcattcaaattctcctatggacaaataatagaacttttgg
tcatatagggacaccagagattaaatcaagtcaaggaacagtagtcagaa
gttaaacatcaagtcaaaaacaaacaaatactcccaaacaagcaagcagg
gccccctacactctgcaacagagcaagagatgacataaaacttggcatat
gaatgataatcactagaaaatagatatttgtatgtatgttgtatatgtgt
ttatgtgcatatacggagtccaataattgatgtcaaatgtcttcttcaat
agctctccatcgtggtttttgagacatgttctatcagtaaaactaaaatt
cactaattctgttaggctggataaatgggaagctctggaggtctttctgt
ctctgtccctctagcagcagcaatacaaattcatgctgttatacacatct
ctaacttgggtgctgggagtctgaattcacatcctcaatattgcaaaatc
ctctacctattgcacaatctccccatcctagaaacataaaagtttaccgt
taagaaatggcatcccactttatttattgtcaagagaaagttggaagagt
aatgaagttagatacattgcctgtgactccagagggtcgtaaagttgaag
taatattctaagcttgatgccatttgtcctggaagggtttaagacatttc
aaccagatattcacgatgatgctgatatttctgttatatgctcttcacaa
agaaattagcctatttatccaaaaagtttccattattatttgatcagggg
gaaaaaagctgtttgaagactataaaatggtatttcctgctaagtgcctc
taagttagtcgtgattgtcaacttggcagatctgagaagtcacatagaga
caacctctaggatatttgtgaagtatatagaagaagttaaagttacatct
tagtgagatgtaagacccacttagatatggatatggataccattccatgt
ctggatttccaggtgaataaaaagaagaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123974012_123975235
seq2: B6Ng01-039P15.b_44_1253

seq1  GAATTCAGATACCACATGTTTATCTGTGTAGGCTTTGCTCTTACCTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACCACATGTTTATCTGTGTAGGCTTTGCTCTTACCTGCAA  50

seq1  ACCTGCTATTTTTGTCTATACGTCTCAGAGAGTAAATGGTTAAACAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTATTTTTGTCTATACGTCTCAGAGAGTAAATGGTTAAACAACCA  100

seq1  CTCAGGCTCTCATCACAATTTTAAAATATCCTTTGTTCCCATTTAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCTCATCACAATTTTAAAATATCCTTTGTTCCCATTTAAAAAA  150

seq1  TAAAAGAAAGGCTCTAACTGTGAAAATTGCTACTTGATTGAGTCAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAGGCTCTAACTGTGAAAATTGCTACTTGATTGAGTCAGAAAA  200

seq1  ATACAGTTTTAGGCAGACACACTGCTTATTTCTTTTACATCACATTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTTTAGGCAGACACACTGCTTATTTCTTTTACATCACATTCTCA  250

seq1  TTTGTAGACAAATGATTCATCCTTCTCTAAGTCTAATCTGATGCTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACAAATGATTCATCCTTCTCTAAGTCTAATCTGATGCTATTTT  300

seq1  AGTTTTGACACCTACAAAATCAGTGCAGACTGGGGAATGGGCCTCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGACACCTACAAAATCAGTGCAGACTGGGGAATGGGCCTCAGGAT  350

seq1  TTCAGAGTGAGGTTTTAAGGCTTTTTCCAAGCTCTCCATTTGCCAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGAGGTTTTAAGGCTTTTTCCAAGCTCTCCATTTGCCAGTCAT  400

seq1  ATGATCAAAAATGTTCTAAGGATCTCTAAACTCTGTTTCCTCATCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAAAAATGTTCTAAGGATCTCTAAACTCTGTTTCCTCATCTGAGA  450

seq1  GACAGGAAAACAGTACTGATGGAAAGGCATATGTGAAAAGTATGTAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAAACAGTACTGATGGAAAGGCATATGTGAAAAGTATGTAGAGT  500

seq1  AAACTAGGGGTTCTAGCAGTTCATAGTATAGGTACTTAATTGTGTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGGGTTCTAGCAGTTCATAGTATAGGTACTTAATTGTGTCTTTA  550

seq1  AAATGATTACATTAATTACAGTAAAATATGACCTAAATGTCACAAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTACATTAATTACAGTAAAATATGACCTAAATGTCACAAAAAAT  600

seq1  GTCTACATGATATTGGAAACATCTTGTTTATAGAGTTGAGCAGTTGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATGATATTGGAAACATCTTGTTTATAGAGTTGAGCAGTTGGAAG  650

seq1  ACACTGTGCATATGACCTAGTTTGTCATTGTTGGCATTCAGAAAAGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGCATATGACCTAGTTTGTCATTGTTGGCATTCAGAAAAGTCAG  700

seq1  GGTGAATGTCAAAGATGAAAAATGGACTAGTGCTTCATCCACTCCAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGTCAAAGATGAAAAATGGACTAGTGCTTCATCCACTCCAGTAG  750

seq1  TGACCCTCGTGACAAGGCCAAAAGCCTGGACGCAGACCCGAGGCAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCGTGACAAGGCCAAAAGCCTGGACGCAGACCCGAGGCAAAAAG  800

seq1  TTCAGGGAAACTTAATCTCCTGGAATTATGGCATCCTGTAATAACGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGAAACTTAATCTCCTGGAATTATGGCATCCTGTAATAACGAATG  850

seq1  CTCCAAATCTGTCCTTGCTTTAGTCAGTAAACAGGTCTGTGTGCTTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATCTGTCCTTGCTTTAGTCAGTAAACAGGTCTGTGTGCTTTCCC  900

seq1  TCAATATTGCTTTATCATAAGTGCCTCTAAGGATTGATTTTGACATATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTGCTTTATCATAAGTGCCTCTAAGGATTGATTTTGACATATAG  950

seq1  CTAAGTTAGATTCTTCACCAGTCCTAGGCAGTCCTTGAGCCAACCCTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTAGATTCTTCACCAGTCCTAGGCAGTCCTTGAGCCAACCCTGGG  1000

seq1  CATGGATAACTGAGTCACTGTCCTACACAGGAATTTTTTATTATTATTAT  1050
      |||||||||||||||||||||||||||||||||||| |      || |||
seq2  CATGGATAACTGAGTCACTGTCCTACACAGGAATTTAT-----ATAATAT  1045

seq1  TATTTTATTAGGTA-TTTTCTTCATTTACATTTCCAATGCTATCCCAAAA  1099
       ||||  | ||||| |||||||||||||||||||||||||||||||||||
seq2  AATTTATTAAGGTATTTTTCTTCATTTACATTTCCAATGCTATCCCAAAA  1095

seq1  TTCCCCTATACCCTGCCCCCCAAATTTACAATTATCTAGAAAGAAGGATG  1149
      |  ||||||| ||||||||   ||||||||| |||| ||||  |||||||
seq2  T--CCCTATA-CCTGCCCC---AATTTACAA-TATCCAGAAGAAAGGATG  1138

seq1  GTTGT-GGTCTAGGGAGGAACTAGAGTAGATACTTAGAACTGTAGATAGC  1198
      | ||| ||||||||   |||||||||||||||||||| ||||| ||||||
seq2  GGTGTGGGTCTAGG--AGAACTAGAGTAGATACTTAG-ACTGT-GATAGC  1184

seq1  TGAGTTACACCCATACACAGGAATTT  1224
      |||||||||||||||||| |||||||
seq2  TGAGTTACACCCATACACCGGAATTT  1210

seq1: chr14_124109745_124110839
seq2: B6Ng01-039P15.g_66_1148 (reverse)

seq1  TATTTTCTCTTTTTTAATTCACTCTGGAAATCCAGACCATGGAATGGTAT  50
      |||||||| | |||| |||||| ||||||||||||| |||||||||||||
seq2  TATTTTCT-TCTTTTTATTCAC-CTGGAAATCCAGA-CATGGAATGGTAT  47

seq1  CCATATCCATATCTAAAGTGGGTCTTTACATCTCACTTAAGATGTAACTT  100
      |||||||||||||| ||||||||| ||||||||||| |||||||||||||
seq2  CCATATCCATATCT-AAGTGGGTC-TTACATCTCAC-TAAGATGTAACTT  94

seq1  TAACTTCTTCTATATAACTTCACAAATATCCTTAGAGGTTTGTCTTCTAT  150
      ||||||||||||||| ||||||||||||||| |||||| ||||| |||||
seq2  TAACTTCTTCTATAT-ACTTCACAAATATCC-TAGAGG-TTGTC-TCTAT  140

seq1  GTGACTTCTCAGATCTGCCAAGTTGACAATCACGACTAACCTTAGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGACTTCTCAGATCTGCCAAGTTGACAATCACGACTAA-CTTAGAGGCA  189

seq1  CCTTAGCAGGAAATACCATTTTATAGTCTTCAAACAGCTTTTTTCCCCCT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTTAGCAGGAAATACCATTTTATAGTCTTCAAACAGCTTTTTTCCCCCT  238

seq1  GATCAAATAATAATGGAAACTTTTTGGATAAATAGGCTAATTTCTTTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATAATAATGGAAACTTTTTGGATAAATAGGCTAATTTCTTTGTG  288

seq1  AAGAGCATATAACAGAAATATCAGCATCATCGTGAATATCTGGTTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATATAACAGAAATATCAGCATCATCGTGAATATCTGGTTGAAAT  338

seq1  GTCTTAAACCCTTCCAGGACAAATGGCATCAAGCTTAGAATATTACTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAACCCTTCCAGGACAAATGGCATCAAGCTTAGAATATTACTTCA  388

seq1  ACTTTACGACCCTCTGGAGTCACAGGCAATGTATCTAACTTCATTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACGACCCTCTGGAGTCACAGGCAATGTATCTAACTTCATTACTCT  438

seq1  TCCAACTTTCTCTTGACAATAAATAAAGTGGGATGCCATTTCTTAACGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTTCTCTTGACAATAAATAAAGTGGGATGCCATTTCTTAACGGT  488

seq1  AAACTTTTATGTTTCTAGGATGGGGAGATTGTGCAATAGGTAGAGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTATGTTTCTAGGATGGGGAGATTGTGCAATAGGTAGAGGATTT  538

seq1  TGCAATATTGAGGATGTGAATTCAGACTCCCAGCACCCAAGTTAGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTGAGGATGTGAATTCAGACTCCCAGCACCCAAGTTAGAGATG  588

seq1  TGTATAACAGCATGAATTTGTATTGCTGCTGCTAGAGGGACAGAGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACAGCATGAATTTGTATTGCTGCTGCTAGAGGGACAGAGACAGA  638

seq1  AAGACCTCCAGAGCTTCCCATTTATCCAGCCTAACAGAATTAGTGAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCAGAGCTTCCCATTTATCCAGCCTAACAGAATTAGTGAATTT  688

seq1  TAGTTTTACTGATAGAACATGTCTCAAAAACCACGATGGAGAGCTATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTACTGATAGAACATGTCTCAAAAACCACGATGGAGAGCTATTGA  738

seq1  AGAAGACATTTGACATCAATTATTGGACTCCGTATATGCACATAAACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACATTTGACATCAATTATTGGACTCCGTATATGCACATAAACACA  788

seq1  TATACAACATACATACAAATATCTATTTTCTAGTGATTATCATTCATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACATACATACAAATATCTATTTTCTAGTGATTATCATTCATATG  838

seq1  CCAAGTTTTATGTCATCTCTTGCTCTGTTGCAGAGTGTAGGGGGCCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTTATGTCATCTCTTGCTCTGTTGCAGAGTGTAGGGGGCCCTGC  888

seq1  TTGCTTGTTTGGGAGTATTTGTTTGTTTTTGACTTGATGTTTAACTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTGGGAGTATTTGTTTGTTTTTGACTTGATGTTTAACTTCTG  938

seq1  ACTACTGTTCCTTGACTTGATTTAATCTCTGGTGTCCCTATATGACCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGTTCCTTGACTTGATTTAATCTCTGGTGTCCCTATATGACCAAA  988

seq1  AGTTCTATTATTTGTCCATAGGAGAATTTGAATGATTTAAAGTGTCTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTATTTGTCCATAGGAGAATTTGAATGATTTAAAGTGTCTCTT  1038

seq1  CGTCTGGAGTAAGGAAGATCAACACCAGCAAATGGCAGGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGGAGTAAGGAAGATCAACACCAGCAAATGGCAGGGAATTC  1083