BAC Information

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BAC

Clone NameB6Ng01-042C07
Chromosome14 (Build37)
Map Location 28,271,761 - 28,360,021
singlet/doubletdoublet
Overlap geneCcdc66
Upstream geneSlmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147
Downstream geneLOC665370, Erc2, LOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C07.bB6Ng01-042C07.g
ACCDH868602DH868603
length968921
definitionDH868602|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C07, 5' end.DH868603|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,271,761 - 28,272,734)(28,359,102 - 28,360,021)
sequence
gaattcatatgtgttaaaccacttctcctacaaagctataattcccagct
ctttctttttatattttgaagaaggaactatcagagattcccagtctaac
ctgcagcttgtgatcttatctcagcctcccaagtagctgaggttataggc
ctgtgccaccagacctggctgtctgtgtatatttgtgtgcacatgtctga
tgctcatggaggccagataaaaagtgcattggaacccccaagaacctcca
tttgtgaatactaggaaccaaaccctggtcctctgcaaaagaagcaaata
cccttactgggcaatgttggcgcatggctttgatcccagcactctgaagg
cagaggcaggtggatctcttgagttcaaggaccccttggtctacagagtg
agctccaggacaaccagagctacacagagaaaccctgacttgaaaaacaa
acaaacaaaaaaagcaagtactcttaactgttgaaccatctctcctgctc
ctgctttgtaaatctatcactttgccatagtgaagagttttaatctaacc
tagtagtattctctatacttagtagaaagtgtgtctctttaaaagtagta
gtaataataaggtatatgtaacttctgtctccccaaactacaggttcttg
ttaaacctttaggggaatgtttctgttttttgtaatttctggtattttgt
atgttactttctccacatagttaaaaggtccttatactatttatctttca
ggtcatctcttgacaggtaaaattatgtaatgtgaataatacttattaat
aactataagattaaattttggcagcatatttcattgaacatttatttgaa
atttcatatgcagttaattcaaagcctgctttatacccaggtccagcatc
tgccttgcaaataatgccttttgtgctatgagaataagttctattattta
cacaatttatttttcaca
gaattccacattaacaaagaaagaaaacacctcaaggaaaccttcctagg
aatttgctgttttaagagatactttattaaacatttatacacatgcaaaa
atgtatcccaaattaaataattccttttggaaaaaggcccagaaaaggat
atagaaccgtttataacttattaactcacaaacacactgaatctatgcca
ggcttctgcataatgtaattccactgagtgtttggttcatttggggctat
ctttccaggctagtggatgctagtcacaagtgtttataggtaaatgtcca
tctttgcttttcagtttctgtgaagactcccttcctgaaaacctcaactt
gtggcttataaaacagacgaattctcaggatcttctcactggtgcctaat
ggtttacctccttggcctgagggtgcatctcctctgcctgatggtttacc
tcctctgcctaaccattttctggggctttcatgacaaaataccagggatc
tggtggcagaagattaaaacctcctgggaaccaaaagccccgggtctcag
gtgttgaccgctttgcttctcctgagacatctgtccttggcttgcgaaca
gcacattcatctcttggggctttgcatccaaatctcctcttctaataagg
acaccagccgtccatcccaacgctttctttttaacttaattacttctgta
aatgttcttgtcaatcaaacacagtaacattccgtggtactggctgggca
gaacttcaacacatgagctttcaaggagcatagttcagcctgttacaacc
aatttccaaggggaccaggagagaaaatgcccacaagtgtggaatggaag
aagaaggggacttgtacttcagaggaggaaggatagcagcaagcagtggg
gaggagagagggatggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28271761_28272734
seq2: B6Ng01-042C07.b_44_1011

seq1  GAATTCATATGTGTTAAACCACTTCTCCTACAAAGCTATAATTCCCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTGTTAAACCACTTCTCCTACAAAGCTATAATTCCCAGCT  50

seq1  CTTTCTTTTTATATTTTGAAGAAGGAACTATCAGAGATTCCCAGTCTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTATATTTTGAAGAAGGAACTATCAGAGATTCCCAGTCTAAC  100

seq1  CTGCAGCTTGTGATCTTATCTCAGCCTCCCAAGTAGCTGAGGTTATAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTGTGATCTTATCTCAGCCTCCCAAGTAGCTGAGGTTATAGGC  150

seq1  CTGTGCCACCAGACCTGGCTGTCTGTGTATATTTGTGTGCACATGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCACCAGACCTGGCTGTCTGTGTATATTTGTGTGCACATGTCTGA  200

seq1  TGCTCATGGAGGCCAGATAAAAAGTGCATTGGAACCCCCAAGAACCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGAGGCCAGATAAAAAGTGCATTGGAACCCCCAAGAACCTCCA  250

seq1  TTTGTGAATACTAGGAACCAAACCCTGGTCCTCTGCAAAAGAAGCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATACTAGGAACCAAACCCTGGTCCTCTGCAAAAGAAGCAAATA  300

seq1  CCCTTACTGGGCAATGTTGGCGCATGGCTTTGATCCCAGCACTCTGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTGGGCAATGTTGGCGCATGGCTTTGATCCCAGCACTCTGAAGG  350

seq1  CAGAGGCAGGTGGATCTCTTGAGTTCAAGGACCCCTTGGTCTACAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTGGATCTCTTGAGTTCAAGGACCCCTTGGTCTACAGAGTG  400

seq1  AGCTCCAGGACAACCAGAGCTACACAGAGAAACCCTGACTTGAAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGACAACCAGAGCTACACAGAGAAACCCTGACTTGAAAAACAA  450

seq1  ACAAACAAAAAAAGCAAGTACTCTTAACTGTTGAACCATCTCTCCTGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAAGCAAGTACTCTTAACTGTTGAACCATCTCTCCTGCTC  500

seq1  CTGCTTTGTAAATCTATCACTTTGCCATAGTGAAGAGTTTTAATCTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTAAATCTATCACTTTGCCATAGTGAAGAGTTTTAATCTAACC  550

seq1  TAGTAGTATTCTCTATACTTAGTAGAAAGTGTGTCTCTTTAAAAGTAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTATTCTCTATACTTAGTAGAAAGTGTGTCTCTTTAAAAGTAGTA  600

seq1  GTAATAATAAGGTATATGTAACTTCTGTCTCCCCAAACTACAGGTTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATAAGGTATATGTAACTTCTGTCTCCCCAAACTACAGGTTCTTG  650

seq1  TTAAACCTTTAGGGGAATGTTTCTGTTTTTTGTAATTTCTGGTATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTTTAGGGGAATGTTTCTGTTTTTTGTAATTTCTGGTATTTTGT  700

seq1  ATGTTACTTTCTCCACATAGTTAAAAGGTCCTTATACTATTTATCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTTTCTCCACATAGTTAAAAGGTCCTTATACTATTTATCTTTCA  750

seq1  GGTCATCTCTTGACAGGTAAAATTATGTAATGTGAATAATACTTATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGTCATCTCTTGACAGGTAAAATTATGTAATGTGAATAATACTTATT-AA  799

seq1  TAACTATAAGATTAAATTTTGGCAGCATATTTCATTGAACA-TTATTTGA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACTATAAGATTAAATTTTGGCAGCATATTTCATTGAACATTTATTTGA  849

seq1  ATTTTCATAGGCAGTTATTTCAAAGCCTGCTTTATACCCAGTGTCCAGCA  899
      | ||||||| ||||||| ||||||||||||||||||||||| ||||||||
seq2  AATTTCATATGCAGTTAATTCAAAGCCTGCTTTATACCCAG-GTCCAGCA  898

seq1  TACTGCCTTGCAAATAATGCCTTTTGTGCTAATGAGAAATAAGTTTCTAT  949
      | |||||||||||||||||||||||||||| ||||| |||||| ||||||
seq2  T-CTGCCTTGCAAATAATGCCTTTTGTGCT-ATGAG-AATAAG-TTCTAT  944

seq1  ATTTAACATCAAGTTATTTTTCACA  974
        || ||| ||| ||||||||||||
seq2  TATTTACA-CAATTTATTTTTCACA  968

seq1: chr14_28359102_28360021
seq2: B6Ng01-042C07.g_67_986 (reverse)

seq1  CTCCCCATCCCTCTCTCCTCCCCACTGCTTGCTGCTATCCTTCCTCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCCCTCTCTCCTCCCCACTGCTTGCTGCTATCCTTCCTCCTCT  50

seq1  GAAGTACAAGTCCCCTTCTTCTTCCATTCCACACTTGTGGGCATTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACAAGTCCCCTTCTTCTTCCATTCCACACTTGTGGGCATTTTCTC  100

seq1  TCCTGGTCCCCTTGGAAATTGGTTGTAACAGGCTGAACTATGCTCCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTCCCCTTGGAAATTGGTTGTAACAGGCTGAACTATGCTCCTTGA  150

seq1  AAGCTCATGTGTTGAAGTTCTGCCCAGCCAGTACCACGGAATGTTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGTGTTGAAGTTCTGCCCAGCCAGTACCACGGAATGTTACTGT  200

seq1  GTTTGATTGACAAGAACATTTACAGAAGTAATTAAGTTAAAAAGAAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTGACAAGAACATTTACAGAAGTAATTAAGTTAAAAAGAAAGCG  250

seq1  TTGGGATGGACGGCTGGTGTCCTTATTAGAAGAGGAGATTTGGATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATGGACGGCTGGTGTCCTTATTAGAAGAGGAGATTTGGATGCAAA  300

seq1  GCCCCAAGAGATGAATGTGCTGTTCGCAAGCCAAGGACAGATGTCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGAGATGAATGTGCTGTTCGCAAGCCAAGGACAGATGTCTCAGG  350

seq1  AGAAGCAAAGCGGTCAACACCTGAGACCCGGGGCTTTTGGTTCCCAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAGCGGTCAACACCTGAGACCCGGGGCTTTTGGTTCCCAGGAG  400

seq1  GTTTTAATCTTCTGCCACCAGATCCCTGGTATTTTGTCATGAAAGCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATCTTCTGCCACCAGATCCCTGGTATTTTGTCATGAAAGCCCCA  450

seq1  GAAAATGGTTAGGCAGAGGAGGTAAACCATCAGGCAGAGGAGATGCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTTAGGCAGAGGAGGTAAACCATCAGGCAGAGGAGATGCACCC  500

seq1  TCAGGCCAAGGAGGTAAACCATTAGGCACCAGTGAGAAGATCCTGAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAAGGAGGTAAACCATTAGGCACCAGTGAGAAGATCCTGAGAAT  550

seq1  TCGTCTGTTTTATAAGCCACAAGTTGAGGTTTTCAGGAAGGGAGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGTTTTATAAGCCACAAGTTGAGGTTTTCAGGAAGGGAGTCTTCA  600

seq1  CAGAAACTGAAAAGCAAAGATGGACATTTACCTATAAACACTTGTGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGAAAAGCAAAGATGGACATTTACCTATAAACACTTGTGACTA  650

seq1  GCATCCACTAGCCTGGAAAGATAGCCCCAAATGAACCAAACACTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACTAGCCTGGAAAGATAGCCCCAAATGAACCAAACACTCAGTGG  700

seq1  AATTACATTATGCAGAAGCCTGGCATAGATTCAGTGTGTTTGTGAGTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATTATGCAGAAGCCTGGCATAGATTCAGTGTGTTTGTGAGTTAA  750

seq1  TAAGTTATAAACGGTTCTATATCCTTTTCTGGGCCTTTTTCCAAAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTATAAACGGTTCTATATCCTTTTCTGGGCCTTTTTCCAAAAGGAA  800

seq1  TTATTTAATTTGGGATACATTTTTGCATGTGTATAAATGTTTAATAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATTTGGGATACATTTTTGCATGTGTATAAATGTTTAATAAAGT  850

seq1  ATCTCTTAAAACAGCAAATTCCTAGGAAGGTTTCCTTGAGGTGTTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAAACAGCAAATTCCTAGGAAGGTTTCCTTGAGGTGTTTTCTT  900

seq1  TCTTTGTTAATGTGGAATTC  920
      ||||||||||||||||||||
seq2  TCTTTGTTAATGTGGAATTC  920