BAC Information

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BAC

Clone NameB6Ng01-042E20
Chromosome14 (Build37)
Map Location 99,261,540 - 99,376,534
singlet/doubletdoublet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E20.bB6Ng01-042E20.g
ACCDH868719DH868720
length1,1231,159
definitionDH868719|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E20, 5' end.DH868720|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,261,540 - 99,262,674)(99,375,361 - 99,376,534)
sequence
gaattcataaaagagcaaatgaataggacagttcaaaggagatatttcac
tgaaatatcctgctgctgccgttctattctgcatttaaggaaataatacc
catgcccaaacagcctctttctcccttaagtggagggttggtatcacaca
gaatgtctacacaggggaaccgattgaaggcagagctgaaagctacagtt
cagcctgatcagccatgtcatatgtctggggcaagtccagcagggtttag
aatgtgctttgaaagagtcagtgggagttgtcagcggcccacacaggcag
gaactgctatcctgtgttccctcagatgggaaaggagcctgcaggggttt
tatgagtgggaagcctgtgttctaggttctgggtgaggtttttgtatgct
tctaaatgcacctttctaacaaacttaggaaggggactcttttcacattt
gtactctgtttctaaacagaaattgcgttatttctttaaaattagaaagc
gagagcatagaagatgtaattatggacacaaagctacattacatagatgg
gtgaagctgaacccacatagagagctgtgggtttctgggcacattttaac
ccagcactcaatgctgggaagagaataaatagttgaactagcctggtaat
cccaatagtcctgggctgataaacagacacagagacaatctgcctgctag
ttctaatggtagctctgggcagaggcagggtgagcctgagtccctttggt
ttcttctttgtccattcttccaaataggaatgggtgtctggtccctattc
tagtggctgagtcaggagtatcgttgtgagaaaaggcagaagaagaaaga
gagcccatcttctctctcatcacttgaagagtaaaatcaagaacgaccag
actcgaagctcacggacttccacaacatagaaacgaaatgacacacttgt
catgatgtgacattgtttttcttcttacaagaagagcagctggaaatcta
gaggctttacagagatgttcagcccattcccactagccgtgataactcca
cttctgctacttgttcgagaattgatgcgtcctgagaactagactgacaa
gtcaagttcagatcatgccattt
gaattccatttactttctcaccttgctatcacaagacctgtgtgaagagt
ctcagagaatatccctcctgatccagctagcagcccatctgttctttggg
tctgccctgtgtctacctgccacccttttgcccttggccagatttacatt
tctctttgtatcagttgatgaaatcttcttcctacatcaagttcctactc
aaattctacttactttacaaagcagaaatattagcttctatttctagctc
cacttagcgactttctgaacctttcccttttatggcatgtaccttttcta
ttgcatgcttcttaattttccctgatctattacaaggccttcaaagtatt
atgagaaacaatatttatatataagtatatgattaatataacattaagca
attaacaaaataataatgttaactttatgatcctttcaacctctatatga
gatcaaaggcatcaaaatataaatattgaggcaggatccaagcaggaact
atgttataaatataatagggcaggaaacagctcatgagtggactgcactt
cactaaggcagtgtcagagtgtatcgaatgtcatggtgactctctaatgt
cctcagaagtccatttagcttctatgcagtatctttttgccacttttact
tcttataaaaatatagttgggtgatgagctttaattgtcaatttgacaca
atctagaatcgactgagaagagtctcaatggaagattgtctacaatggtt
tggtttgtgggcgtgtctgtgggcattgtcttaaattagttgatgtgagg
agttctagcccactgtgagaagaactattccctaggcagacatgaaatca
gagtatataagaactccaaagttattttagagtaccctaaagtgagatgc
cttggagtttgaagacaactttagtcccttactttcatgagttgcaccac
tttaagtaagttgcttaatctcaaatttttcagtcccttcatctatgaga
gatatatacattttattttgtagagtttgggtgaaaaaataaataaatta
ctaataagaaccaaaatgagattactatatagggagtggtaccattgaat
caatatttgtgcaatcattaatatgtactattgccatgtttaggaacgca
agagaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99261540_99262674
seq2: B6Ng01-042E20.b_47_1169

seq1  GAATTCATAAAAGAGCAAATGAATAGGACAGTTCAAAGGAGATATTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAAAGAGCAAATGAATAGGACAGTTCAAAGGAGATATTTCAC  50

seq1  TGAAATATCCTGCTGCTGCCGTTCTATTCTGCATTTAAGGAAATAATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCCTGCTGCTGCCGTTCTATTCTGCATTTAAGGAAATAATACC  100

seq1  CATGCCCAAACAGCCTCTTTCTCCCTTAAGTGGAGGGTTGGTATCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAAACAGCCTCTTTCTCCCTTAAGTGGAGGGTTGGTATCACACA  150

seq1  GAATGTCTACACAGGGGAACCGATTGAAGGCAGAGCTGAAAGCTACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTACACAGGGGAACCGATTGAAGGCAGAGCTGAAAGCTACAGTT  200

seq1  CAGCCTGATCAGCCATGTCATATGTCTGGGGCAAGTCCAGCAGGGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGATCAGCCATGTCATATGTCTGGGGCAAGTCCAGCAGGGTTTAG  250

seq1  AATGTGCTTTGAAAGAGTCAGTGGGAGTTGTCAGCGGCCCACACAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTTGAAAGAGTCAGTGGGAGTTGTCAGCGGCCCACACAGGCAG  300

seq1  GAACTGCTATCCTGTGTTCCCTCAGATGGGAAAGGAGCCTGCAGGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTATCCTGTGTTCCCTCAGATGGGAAAGGAGCCTGCAGGGGTTT  350

seq1  TATGAGTGGGAAGCCTGTGTTCTAGGTTCTGGGTGAGGTTTTTGTATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTGGGAAGCCTGTGTTCTAGGTTCTGGGTGAGGTTTTTGTATGCT  400

seq1  TCTAAATGCACCTTTCTAACAAACTTAGGAAGGGGACTCTTTTCACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGCACCTTTCTAACAAACTTAGGAAGGGGACTCTTTTCACATTT  450

seq1  GTACTCTGTTTCTAAACAGAAATTGCGTTATTTCTTTAAAATTAGAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGTTTCTAAACAGAAATTGCGTTATTTCTTTAAAATTAGAAAGC  500

seq1  GAGAGCATAGAAGATGTAATTATGGACACAAAGCTACATTACATAGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATAGAAGATGTAATTATGGACACAAAGCTACATTACATAGATGG  550

seq1  GTGAAGCTGAACCCACATAGAGAGCTGTGGGTTTCTGGGCACATTTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTGAACCCACATAGAGAGCTGTGGGTTTCTGGGCACATTTTAAC  600

seq1  CCAGCACTCAATGCTGGGAAGAGAATAAATAGTTGAACTAGCCTGGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCAATGCTGGGAAGAGAATAAATAGTTGAACTAGCCTGGTAAT  650

seq1  CCCAATAGTCCTGGGCTGATAAACAGACACAGAGACAATCTGCCTGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAGTCCTGGGCTGATAAACAGACACAGAGACAATCTGCCTGCTAG  700

seq1  TTCTAATGGTAGCTCTGGGCAGAGGCAGGGTGAGCCTGAGTCCCTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGGTAGCTCTGGGCAGAGGCAGGGTGAGCCTGAGTCCCTTTGGT  750

seq1  TTCTTCTTTGTCCATTCTTCCAAATAGGAATGGGTGTCTGGTCCCTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTGTCCATTCTTCCAAATAGGAATGGGTGTCTGGTCCCTATTC  800

seq1  TAGTGGCTGAGTCAGGAGTATCGTTGTGAGAAAAGGCAGAAGAAGAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCTGAGTCAGGAGTATCGTTGTGAGAAAAGGCAGAAGAAGAAAGA  850

seq1  GAGCCCATCTTCTCTCTCATCACTTGAAGAGTAAAATCAAGAAGGACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGCCCATCTTCTCTCTCATCACTTGAAGAGTAAAATCAAGAACGACCAG  900

seq1  ACTCGAAGCTCACGGACTTCCACAACATAGAAACGAAATGACACACTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAAGCTCACGGACTTCCACAACATAGAAACGAAATGACACACTTGT  950

seq1  CATGATGTGACATTGTTTTTCTTCTTACAAAGAAGAGCAAGCTGGAAATC  1000
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CATGATGTGACATTGTTTTTCTTCTTAC-AAGAAGAGC-AGCTGGAAATC  998

seq1  TAGAGGCTTTACAGAGATGTTCAGCCCAATTCCCACTAGCCGTTGATAAC  1050
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TAGAGGCTTTACAGAGATGTTCAGCCC-ATTCCCACTAGCCG-TGATAAC  1046

seq1  TCCACTTCTGCTACTTGGTTCGGAGAATTGATGCCGTCCTGAG-ACTAGA  1099
      |||||||||||||||| |||| ||||||||||| ||||||||| ||||||
seq2  TCCACTTCTGCTACTT-GTTC-GAGAATTGATG-CGTCCTGAGAACTAGA  1093

seq1  CTGACAAGTTCAAGGTCTCCAGGATCAGTGCCATTT  1135
      |||||||| ||||| ||     ||||| ||||||||
seq2  CTGACAAG-TCAAGTTC----AGATCA-TGCCATTT  1123

seq1: chr14_99375361_99376534
seq2: B6Ng01-042E20.g_64_1222 (reverse)

seq1  CATTTCTCTTGCTGTTTCCTAAAAACAT-GCAATAGTTACATAATAAAAT  49
      ||||||||||||   |||||  |||||| ||||||| |||||| |  |||
seq2  CATTTCTCTTGC--GTTCCT--AAACATGGCAATAG-TACATATT--AAT  43

seq1  GAATAGCAACAAAAATAATGATTAAATAGTACCACTCACTATATAGTAAA  99
      || |     || ||||| ||||| ||| ||||||||| |||||||||  |
seq2  GATT----GCACAAATATTGATTCAATGGTACCACTCCCTATATAGT--A  87

seq1  ATCTCATTTTGTGTCTTA-TAGTAATTTATTTA-TTTCTCACCCAAACTC  147
      |||||||||||  ||||| |||||||||||||| ||| ||||||||||||
seq2  ATCTCATTTTGGTTCTTATTAGTAATTTATTTATTTTTTCACCCAAACTC  137

seq1  TACAGAATAGATGTTATTATTATTCTCTTTATAGATGAGGGGACTGAAAA  197
      |||| |||| |   || |||   ||||   |||||||| |||||||||||
seq2  TACAAAATAAAATGTA-TATATCTCTC---ATAGATGAAGGGACTGAAAA  183

seq1  ATTTTGAGATTAAGCAACTTACTTAAAGTGGTGCAACTCATGAAAGTAAG  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTGAGATTAAGCAACTTACTTAAAGTGGTGCAACTCATGAAAGTAAG  232

seq1  GGACTAAAGTTGTCTTCAAACTCCAAGGCATCTCACTTTAGGGTACTCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAGTTGTCTTCAAACTCCAAGGCATCTCACTTTAGGGTACTCTA  282

seq1  AAATAACTTTGGAGTTCTTATATACTCTGATTTCATGTCTGCCTAGGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTTGGAGTTCTTATATACTCTGATTTCATGTCTGCCTAGGGAA  332

seq1  TAGTTCTTCTCACAGTGGGCTAGAACTCCTCACATCAACTAATTTAAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCTCACAGTGGGCTAGAACTCCTCACATCAACTAATTTAAGAC  382

seq1  AATGCCCACAGACACGCCCACAAACCAAACCATTGTAGACAATCTTCCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCACAGACACGCCCACAAACCAAACCATTGTAGACAATCTTCCAT  432

seq1  TGAGACTCTTCTCAGTCGATTCTAGATTGTGTCAAATTGACAATTAAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCTTCTCAGTCGATTCTAGATTGTGTCAAATTGACAATTAAAGC  482

seq1  TCATCACCCAACTATATTTTTATAAGAAGTAAAAGTGGCAAAAAGATACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCCAACTATATTTTTATAAGAAGTAAAAGTGGCAAAAAGATACT  532

seq1  GCATAGAAGCTAAATGGACTTCTGAGGACATTAGAGAGTCACCATGACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAGCTAAATGGACTTCTGAGGACATTAGAGAGTCACCATGACAT  582

seq1  TCGATACACTCTGACACTGCCTTAGTGAAGTGCAGTCCACTCATGAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATACACTCTGACACTGCCTTAGTGAAGTGCAGTCCACTCATGAGCTG  632

seq1  TTTCCTGCCCTATTATATTTATAACATAGTTCCTGCTTGGATCCTGCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCCTATTATATTTATAACATAGTTCCTGCTTGGATCCTGCCTC  682

seq1  AATATTTATATTTTGATGCCTTTGATCTCATATAGAGGTTGAAAGGATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATATTTTGATGCCTTTGATCTCATATAGAGGTTGAAAGGATCA  732

seq1  TAAAGTTAACATTATTATTTTGTTAATTGCTTAATGTTATATTAATCATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAACATTATTATTTTGTTAATTGCTTAATGTTATATTAATCATA  782

seq1  TACTTATATATAAATATTGTTTCTCATAATACTTTGAAGGCCTTGTAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATATATAAATATTGTTTCTCATAATACTTTGAAGGCCTTGTAATA  832

seq1  GATCAGGGAAAATTAAGAAGCATGCAATAGAAAAGGTACATGCCATAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGGAAAATTAAGAAGCATGCAATAGAAAAGGTACATGCCATAAAA  882

seq1  GGGAAAGGTTCAGAAAGTCGCTAAGTGGAGCTAGAAATAGAAGCTAATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTTCAGAAAGTCGCTAAGTGGAGCTAGAAATAGAAGCTAATAT  932

seq1  TTCTGCTTTGTAAAGTAAGTAGAATTTGAGTAGGAACTTGATGTAGGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTGTAAAGTAAGTAGAATTTGAGTAGGAACTTGATGTAGGAAG  982

seq1  AAGATTTCATCAACTGATACAAAGAGAAATGTAAATCTGGCCAAGGGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCATCAACTGATACAAAGAGAAATGTAAATCTGGCCAAGGGCAA  1032

seq1  AAGGGTGGCAGGTAGACACAGGGCAGACCCAAAGAACAGATGGGCTGCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGCAGGTAGACACAGGGCAGACCCAAAGAACAGATGGGCTGCTA  1082

seq1  GCTGGATCAGGAGGGATATTCTCTGAGACTCTTCACACAGGTCTTGTGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCAGGAGGGATATTCTCTGAGACTCTTCACACAGGTCTTGTGAT  1132

seq1  AGCAAGGTGAGAAAGTAAATGGAATTC  1174
      |||||||||||||||||||||||||||
seq2  AGCAAGGTGAGAAAGTAAATGGAATTC  1159