BAC Information

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BAC

Clone NameB6Ng01-042G15
Chromosome14 (Build37)3 (Build37)
Map Location 46,613,101 - 46,614,20533,004,614 - 33,004,783
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685
Downstream geneLOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042G15.bB6Ng01-042G15.g
ACCDH868801DH868802
length1,093484
definitionDH868801|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G15, 5' end.DH868802|Mus musculus domesticus DNA, BAC clone: B6Ng01-042G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,613,101 - 46,614,205)(33,004,614 - 33,004,783)
sequence
gaattcctctcagctcagggaggttttatggccaaccattcttaagaaat
atgtgttaattttaccaattgaaattttatttatgaagaaattccatgta
ctcaggaggatggcatggataggctggctttgttgcaaatgagtaaccca
gatcctataaagatggaagaagggcccaagatgccccttcagtgaatgaa
gcactggaatttattttcccactgaggttagggatagccaagacctcatt
cggggccatgcgtctataacctaccaaaaagctggaagacagtcaccatt
tctgagataaagcaatgatctctatggtttaaaaagatgaaatacatagc
taagacttgagcgattaagcaaaggctacaagaattcatctctcagcttt
actcatttctgtcactattttatatacactgaagctgacttcagtaatgg
aaggcatccacttcctttatgtatgtgaattatgtttctggggctctcag
catgagagtggtacagaattcttgataggctgaagagaggggccacagat
tttataagtgccttgtgcttttcctctcagaacctgcttttcacatttca
tttctttccctgtcttcctcatcattctttttgtggtcagtcgggttgcc
acccaaacccacagtgacacctgctggctaatcaaatatggcccgacttg
ctgcaatcaaagcaacccagggagtgtgttaaactagcattaactactac
aagattctttcaaactcaggaaggtgagaaaagcctgaatgactatggtt
aagggttgttttggaaaatcttcccgaggcagtaaacatgtaaaatgtaa
aaactgtgggtttctttcttttcttttctttctttctttttttcccccct
ttgagagttttaagtacaacctggaccatgaaccaattatttaattgtga
gatagaagtatgcaaataatcatggcaagtcactcttgtaatgtttgcat
cagtccacatttttattgcatatggtagcacgtaccatccccgaacaaag
ttcccgaagacagaataccccatgacgtctttttctctctgac
gaattccacagtggttgtataagtctgcactcccactagccaggatgagt
gtccccttactccacattctcatcagcatgagctgtcacttgtgttattg
atcttagtcatcctgacaggtgtcaaatggaatctcaaaatagttttaat
gcatttccctgatgaccaaagatactgaatgttttaaaagtgtttttcaa
ctgtttgagtttccacttttgagaagtctctgtttatacttgtacaacgt
ttttatttgggttgttttcttgatatctagtttaaaaaaatttttttttc
atttatttatttatttatttatgtatttatttatttatttatttatttat
ttatttatttatttaatgtaagtacactgtagctgtcttcagacacacca
gaagagggagtcagatcttgttaggctcaggacctttggaagagcagtca
ggtgctcttacctgctgagccatctcaccagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46613101_46614205
seq2: B6Ng01-042G15.b_44_1136 (reverse)

seq1  GTCAGAGAGAAAAAAGAACCGTCCATGTGCGTATTCTGTTCTTTGGGGAA  50
      ||||||||| |||||||  ||| |||| | |||||||||   || |||||
seq2  GTCAGAGAG-AAAAAGA--CGT-CATG-GGGTATTCTGT--CTTCGGGAA  43

seq1  CTTTGTTTCGTGATGGTTACGTGCTACCATATGCAATAAAAATGT-GACT  99
      |||||||  | ||||| |||||||||||||||||||||||||||| ||||
seq2  CTTTGTTCGGGGATGG-TACGTGCTACCATATGCAATAAAAATGTGGACT  92

seq1  GATGCAAACATTACAAAGAGTGACTTGCCATGAATTATTTGCATAACTTC  149
      |||||||||||||| ||||||||||||||||| ||||||||||| |||||
seq2  GATGCAAACATTAC-AAGAGTGACTTGCCATG-ATTATTTGCAT-ACTTC  139

seq1  TATCTCACAATTAAATAATTGGTTCATGGTCCAGGTTGTACTTAAAACTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACAATTAAATAATTGGTTCATGGTCCAGGTTGTACTTAAAACTC  189

seq1  TCAAAGGGGGGAAAAAAAAAGAAAGAAAGAAAAGAAAAGAAAGAAACCCA  249
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGGGG--AAAAAAAGAAAGAAAGAAAAGAAAAGAAAGAAACCCA  237

seq1  CAGTTTTTACATTTTACATGTTTACTGCCTCGGGAAGATTTTCCAAAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTACATTTTACATGTTTACTGCCTCGGGAAGATTTTCCAAAACA  287

seq1  ACCCTTAACCATAGTCATTCAGGCTTTTCTCACCTTCCTGAGTTTGAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAACCATAGTCATTCAGGCTTTTCTCACCTTCCTGAGTTTGAAAG  337

seq1  AATCTTGTAGTAGTTAATGCTAGTTTAACACACTCCCTGGGTTGCTTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGTAGTAGTTAATGCTAGTTTAACACACTCCCTGGGTTGCTTTGA  387

seq1  TTGCAGCAAGTCGGGCCATATTTGATTAGCCAGCAGGTGTCACTGTGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAAGTCGGGCCATATTTGATTAGCCAGCAGGTGTCACTGTGGGT  437

seq1  TTGGGTGGCAACCCGACTGACCACAAAAAGAATGATGAGGAAGACAGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGCAACCCGACTGACCACAAAAAGAATGATGAGGAAGACAGGGA  487

seq1  AAGAAATGAAATGTGAAAAGCAGGTTCTGAGAGGAAAAGCACAAGGCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAATGTGAAAAGCAGGTTCTGAGAGGAAAAGCACAAGGCACT  537

seq1  TATAAAATCTGTGGCCCCTCTCTTCAGCCTATCAAGAATTCTGTACCACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCTGTGGCCCCTCTCTTCAGCCTATCAAGAATTCTGTACCACT  587

seq1  CTCATGCTGAGAGCCCCAGAAACATAATTCACATACATAAAGGAAGTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCTGAGAGCCCCAGAAACATAATTCACATACATAAAGGAAGTGGA  637

seq1  TGCCTTCCATTACTGAAGTCAGCTTCAGTGTATATAAAATAGTGACAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCATTACTGAAGTCAGCTTCAGTGTATATAAAATAGTGACAGAA  687

seq1  ATGAGTAAAGCTGAGAGATGAATTCTTGTAGCCTTTGCTTAATCGCTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAAAGCTGAGAGATGAATTCTTGTAGCCTTTGCTTAATCGCTCAA  737

seq1  GTCTTAGCTATGTATTTCATCTTTTTAAACCATAGAGATCATTGCTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCTATGTATTTCATCTTTTTAAACCATAGAGATCATTGCTTTAT  787

seq1  CTCAGAAATGGTGACTGTCTTCCAGCTTTTTGGTAGGTTATAGACGCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATGGTGACTGTCTTCCAGCTTTTTGGTAGGTTATAGACGCATG  837

seq1  GCCCCGAATGAGGTCTTGGCTATCCCTAACCTCAGTGGGAAAATAAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAATGAGGTCTTGGCTATCCCTAACCTCAGTGGGAAAATAAATTC  887

seq1  CAGTGCTTCATTCACTGAAGGGGCATCTTGGGCCCTTCTTCCATCTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTCATTCACTGAAGGGGCATCTTGGGCCCTTCTTCCATCTTTAT  937

seq1  AGGATCTGGGTTACTCATTTGCAACAAAGCCAGCCTATCCATGCCATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGGGTTACTCATTTGCAACAAAGCCAGCCTATCCATGCCATCCT  987

seq1  CCTGAGTACATGGAATTTCTTCATAAATAAAATTTCAATTGGTAAAATTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTACATGGAATTTCTTCATAAATAAAATTTCAATTGGTAAAATTA  1037

seq1  ACACATATTTCTTAAGAATGGTTGGCCATAAAACCTCCCTGAGCTGAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATTTCTTAAGAATGGTTGGCCATAAAACCTCCCTGAGCTGAGAG  1087

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1093

seq1: chr3_33004614_33004783
seq2: B6Ng01-042G15.g_424_548 (reverse)

seq1  GGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAA  50
      ||||||||||||||||||||  |||||||||||| |||||||||||| ||
seq2  GGGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCTGACTGCTCTTCCAAA  50

seq1  GGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT  100
      ||||| |||                                      | |
seq2  GGTCCTGAG--------------------------------------CCT  62

seq1  AACAAGCTCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTA  112

seq1  CTTACATATAATAATAAATA  170
      |||||||       ||||||
seq2  CTTACAT-------TAAATA  125