BAC Information

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BAC

Clone NameB6Ng01-042K20
Chromosome14 (Build37)
Map Location 82,544,993 - 82,546,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K20.g
ACCDH868978
length1,136
definitionDH868978|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattctccaatgaacttctctggttttcctatgtggaaaggcac
tatcataaatctacccgatccttgtccaaccaaagacttctcagttcaaa
ctcaagttcactttccaataattttgggaaagatccgctaagccttcttc
tttctccctgtacctccctctgttttgaaggttatagcattgcctttgtt
ttggcttttctctcatccacactgtttgctcattaattttattgcagcaa
attgtatatctttaattctttggctgcatctcttaaaacatctagaaata
ttcaattgattatgtcattataatttcacctacatggtggttcatatctt
ccctattccatagcattgttcttctagaatttgattctagagggcatcat
tgttttctgtttcactattatttatttatttatttatttatttatttatt
tatttatttatttattgccctcaccaagtatctaagttaatgcatgttgt
agacagcaagtaacaattacttaatcccaaaatgcaagatctgtcaggat
tgcagggcatattatctatcagaataaggtggaatatttgtctggtgtgc
ttatttcaaattcttctactaaaaaagcattcgtgtttaatggtctgggt
tagggccagaatttagtttttataagcagatgctgttcttgccttgagaa
actagattacttttctatttttaactgctactaaattttggataaatata
attttaacactttaaagtaaatgtttgtaaatccacatgttttctttcaa
aatatatatatttgtattacccaggaactgtctttcttttctcatactaa
aaaactacctttttcaaatttaaaaagttctcattattttccatcgcttg
tttttctatcaagagacataattactacattagaggcatataggatcatc
taaaattgtaacttcctgcgtctgaccgtaatggcccttattcgtggcac
ctgcaccgactgagtatgcactaagcgcgactgcggtggtaaaaactcct
cataagatccaactggaagcattattcaatactggataagctggattggc
cctcgtgggtgagacctcctcctggctggtagtctt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_82544993_82546150
seq2: B6Ng01-042K20.g_66_1201

seq1  GAATTCTATTCTCCAATGAACTTCTCTGGTTTTCCTATGTGGAAAGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTCTCCAATGAACTTCTCTGGTTTTCCTATGTGGAAAGGCAC  50

seq1  TATCATAAATCTACCCCATCCTTGTCCAACCAAAGACTTCTCAGTTCAAA  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATCATAAATCTACCCGATCCTTGTCCAACCAAAGACTTCTCAGTTCAAA  100

seq1  CTCAAGTTCACTTTCCAATAATTTTGGGAAAGATCCGCTAAGCCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTTCACTTTCCAATAATTTTGGGAAAGATCCGCTAAGCCTTCTTC  150

seq1  TTTCTCCCTGTACCTCCCTCTGTTTTGAAGGTTATAGCATTGCCTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTGTACCTCCCTCTGTTTTGAAGGTTATAGCATTGCCTTTGTT  200

seq1  TTGGCTTTTCTCTCATCCACACTGTTTGCTCATTAATTTTATTGCAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTTCTCTCATCCACACTGTTTGCTCATTAATTTTATTGCAGCAA  250

seq1  ATTGTATATCTTTAATTCTTTGGCTGCATCTCTTAAAACATCTAGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATCTTTAATTCTTTGGCTGCATCTCTTAAAACATCTAGAAATA  300

seq1  TTCAATTGATTATGTCATTATAATTTCACCTACATGGTGGTTCATATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTGATTATGTCATTATAATTTCACCTACATGGTGGTTCATATCTT  350

seq1  CCCTATTCCATAGCATTGTTCTTCTAGAATTTGATTCTAGAGGGCATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCCATAGCATTGTTCTTCTAGAATTTGATTCTAGAGGGCATCAT  400

seq1  TGTTTTCTGTTTCACTATTATTTATTTATTTATTTATTTATTTATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGTTTCACTATTATTTATTTATTTATTTATTTATTTATTTATT  450

seq1  TATTTATTTATTTATTGCCCTCACCAAGTATCTAAGTTAATGCATGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTGCCCTCACCAAGTATCTAAGTTAATGCATGTTGT  500

seq1  AGACAGCAAGTAACAATTACTTAATCCCAAAATGCAAGATCTGTCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAAGTAACAATTACTTAATCCCAAAATGCAAGATCTGTCAGGAT  550

seq1  TGCAGGGCATATTATCTATCAGAATAAGGTGGAATATTTGTCTGGTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCATATTATCTATCAGAATAAGGTGGAATATTTGTCTGGTGTGC  600

seq1  TTATTTCAAATTCTTCTACTAAAAAAGCATTCGTGTTTAATGGTCTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAAATTCTTCTACTAAAAAAGCATTCGTGTTTAATGGTCTGGGT  650

seq1  TAGGGCCAGAATTTAGTTTTTATAAGCAGATGCTGTTCTTGCCTTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCCAGAATTTAGTTTTTATAAGCAGATGCTGTTCTTGCCTTGAGAA  700

seq1  ACTAGATTACTTTTCTATTTTTAACTGCTACTAAATTTTGGATAAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTACTTTTCTATTTTTAACTGCTACTAAATTTTGGATAAATATA  750

seq1  ATTTTAACACTTTAAAGTAAATGTTTGTAAATCCACATGTTTTCTTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTTTAACACTTTAAAGTAAATGTTTGTAAATCCACATGTTTTCTTTCA-  799

seq1  AAATATTTATATTTGTATTTCCGAGGAACTGTCTTTCTTTTCTCATACTA  850
      |||||| |||||||||||| || |||||||||||||||||||||||||||
seq2  AAATATATATATTTGTATTACCCAGGAACTGTCTTTCTTTTCTCATACTA  849

seq1  AAAGAACTTCCTTTTTCAGATTTTAAAAATGTTCTCATTATTTTTCCTTC  900
      ||| |||| ||||||||| ||||  |||| |||||||||| |||||| ||
seq2  AAA-AACTACCTTTTTCAAATTT--AAAAAGTTCTCATTA-TTTTCCATC  895

seq1  GTTTTGTTTTTCTATC-AGAGATATCATTATTTACTACATTAGTGGCATA  949
      |  ||||||||||||| ||||| |    || |||||||||||| ||||||
seq2  G-CTTGTTTTTCTATCAAGAGACA----TAATTACTACATTAGAGGCATA  940

seq1  TAGGATCTTCTAATATTGTAACTTCCTGTGTTCTTACCTGTAATGGCTGT  999
      ||||||| ||||| |||||||||||||| | ||| ||| ||||||||   
seq2  TAGGATCATCTAAAATTGTAACTTCCTGCG-TCTGACC-GTAATGGC-CC  987

seq1  TTTTTTGTGTCACCTTGACACAGACTGGAGTTATCACTAAAACGGAGCTT  1049
      || || ||| |||||   ||| |||| ||||   |||| || ||   || 
seq2  TTATTCGTGGCACCT--GCACCGACT-GAGTATGCACT-AAGCGCGACTG  1033

seq1  CAGTTGATAAAAATGCCTCCATAAGATCCAAATGTAAGGCATTTTCTCAA  1099
      | | || ||||||  ||| |||||||||||| || || ||||| | ||||
seq2  C-GGTGGTAAAAACTCCT-CATAAGATCCAACTGGAA-GCATTAT-TCAA  1079

seq1  TTAGTGATCAAGCTGGATTGGCCCCTTGTGGGTGGGACCATCTCTGGGCT  1149
       || ||   |||||||||||| |||| ||||||| ||||  |||  ||||
seq2  -TACTGGATAAGCTGGATTGG-CCCTCGTGGGTGAGACCTCCTCCTGGCT  1127

seq1  GGTAGTCTT  1158
      |||||||||
seq2  GGTAGTCTT  1136