BAC Information

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BAC

Clone NameB6Ng01-043J09
Chromosome14 (Build37)
Map Location 14,276,282 - 14,398,938
singlet/doubletdoublet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J09.bB6Ng01-043J09.g
ACCDH869603DH869604
length1,1401,068
definitionDH869603|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J09, 5' end.DH869604|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,397,787 - 14,398,938)(14,276,282 - 14,277,334)
sequence
gaattctccataaagtgttgtgtaagaagtctcgcctttggtgtgtctgt
aggaagttattttggttttgattactttaatggagatgggatgactgttc
tttgggtttggtcttcaactgtataagagtagagatggtgagccaagcac
tagctttcatgcaataactcttcgctctttgctctgtggctgtgatatga
cttagctgtttagttccagctgccttggcttctccacagtgatggactat
aactataacttggcactgggagccaaacaaacactttctctcttaggcta
agtttgtcacagcactggaaaccaaactactaccaaaggtgaaacagtga
aaacatcaaagaatcaatggtaaggggaagggcctgctgcagtcgtggcc
agtggccatctttctacatatataagatggagtaagaactgggaaaatgg
ttagaccctcagcaagtgcctctctaacagcgagttgagtgggcatcatc
caaatcatcccaaggctgcatctgcttacactggctccttgtgagcagca
acttgtggcaagattggaaccaagagggtttgctcttcacagctctacca
actgcaagatgtcttcctgtcggatccctaggatatatgctccttttaaa
acaaactttgattattgggttttcttttaatatcacagaagtttcatact
gggctctttctgttttcattagtagaattatatcttctttgtcccttccc
ctaggatgtaataataataataaataataataaaccagtttggtgtatta
tataacttttgatctcatttgatctttgttgatgagaaagactattttgc
gcagggccagaacagcatgactcaacaaaatgatttttatgtgactaaaa
taagttttttcttttaaataacaaatggactttttcccagtgtatgagta
aactggccgtgcagagtctttctttggatgaggattttgcctggccctta
gatctgagagtgtcttcttcatccaaacaaacaaacaaacaacaacaaat
ccctcccaaacccaaagaaacaacgttctgcttactgccacttctttcat
gtactctacaggagaagcgacgactctggcttcaattttg
gaattcaccaataaggctaagctgattgcccagcagacagtactggggtt
ccagggcacactacatttgtaggttttatttttttattttgtatctggat
atgtttgggttttttattggatattttctttatttacatttcaaatgtta
tacccttttctgatttctcctctgaaaaacaccttcccttattccctccc
tcctccccctgctcaccaacccacccatttcctggccttggcattcccca
atactggggcatagagccttcataggacaaaggccctctcctcccattga
tgtcctactagtagttttaaaacatttaaaacattggttctggagatcaa
actcaggtctataaggttgctcaacaagcattttacaaactgagctatct
cgcccacccagttgggctgggttttgaaggatccttatgagtttgtaacc
tacatccttgcactcttaaaagggaaagtggcttttcagcaatgcattca
atggggatttgctttaaaccttggagagtaacttgagcagcgtttgctgc
cttccatggagaacaacactttcaccttcttcatctcttagatagtgttg
gtgaacctaaatcacctgtgcccattcagccagctggagtccctgattct
gtcagatagtcatgggactttgactatgagatgagagcagaaagtatgac
actgaaatccataccattgcctgaactaaaaggattttgaaaatgtgcaa
agggaacagctgtttttccaccctcctgtgctcagagtgaaaggtttagt
caggttgaactaataagaagcttgaaatccctttatagagaataagtctg
cccatgcaggcaaaagacaccactgaggactcccacttgcaagttgttgg
ggtaaagaaaaagacaagtgtgacacagctgaaaaaacaataggaaacaa
aacaaaacacagagtgaaattgggactacctgaaagggggagggcaactt
ctggaaggaatgcagtggctgtttctgagtgacaaatataatataaatta
atcataataaataataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_14397787_14398938
seq2: B6Ng01-043J09.b_45_1184 (reverse)

seq1  CAAAATGGAAG-CAGAGTCGCTTCGCTTCTCCTGTGATGTACATGGAAGA  49
      |||||| |||| ||||||||  |||||||||||||   ||||||| ||| 
seq2  CAAAATTGAAGCCAGAGTCG--TCGCTTCTCCTGTAGAGTACATGAAAG-  47

seq1  AAGTGGCAGTAAAGCAGGAACGTGGTTTCTTTGGGTTTGGGGGGGATTTG  99
      |||||||||| ||||| |||||| ||||||||||||||||| ||||||||
seq2  AAGTGGCAGT-AAGCA-GAACGTTGTTTCTTTGGGTTTGGGAGGGATTTG  95

seq1  TTTGTTTGTTTGTTTGTTTGTTTTGGATGAAGAAGACACTCTCAGAATTC  149
      ||   ||||||||||||||| |||||||||||||||||||||||||  ||
seq2  TT--GTTGTTTGTTTGTTTG-TTTGGATGAAGAAGACACTCTCAGA--TC  140

seq1  TAAGGGCCAAGGCAAAAATCCTCATTCCAAAGAAAGAACTCTGCACGGCC  199
      |||||||| |||| |||||||||| ||||||||||| |||||||||||||
seq2  TAAGGGCC-AGGC-AAAATCCTCA-TCCAAAGAAAG-ACTCTGCACGGCC  186

seq1  AGTTTACTCATACACTGGGAAAAAGTCCATTTGTTATTTTAAAAGAAAAA  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTTTACTCATACACTGGGAAAAAGTCCATTTGTTA-TTTAAAAGAAAAA  235

seq1  ACTTATTTTAGTCACAT-AAAATCATTTTGTTGAGTCATGCTGTTCTGGC  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTTATTTTAGTCACATAAAAATCATTTTGTTGAGTCATGCTGTTCTGGC  285

seq1  CCTGCGC-AAATAGTCTTTCTCATCAACAAAGATCAAATGAGATCAAAAG  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGCAAAATAGTCTTTCTCATCAACAAAGATCAAATGAGATCAAAAG  335

seq1  TTATATAATACACCAAACTGGTTTATTATTATTTATTATTATTATTACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAATACACCAAACTGGTTTATTATTATTTATTATTATTATTACAT  385

seq1  CCTAGGGGAAGGGACAAAGAAGATATAATTCTACTAATGAAAACAGAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGGAAGGGACAAAGAAGATATAATTCTACTAATGAAAACAGAAAG  435

seq1  AGCCCAGTATGAAACTTCTGTGATATTAAAAGAAAACCCAATAATCAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTATGAAACTTCTGTGATATTAAAAGAAAACCCAATAATCAAAG  485

seq1  TTTGTTTTAAAAGGAGCATATATCCTAGGGATCCGACAGGAAGACATCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAAAAGGAGCATATATCCTAGGGATCCGACAGGAAGACATCTT  535

seq1  GCAGTTGGTAGAGCTGTGAAGAGCAAACCCTCTTGGTTCCAATCTTGCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGTAGAGCTGTGAAGAGCAAACCCTCTTGGTTCCAATCTTGCCA  585

seq1  CAAGTTGCTGCTCACAAGGAGCCAGTGTAAGCAGATGCAGCCTTGGGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGCTGCTCACAAGGAGCCAGTGTAAGCAGATGCAGCCTTGGGATG  635

seq1  ATTTGGATGATGCCCACTCAACTCGCTGTTAGAGAGGCACTTGCTGAGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGATGCCCACTCAACTCGCTGTTAGAGAGGCACTTGCTGAGGG  685

seq1  TCTAACCATTTTCCCAGTTCTTACTCCATCTTATATATGTAGAAAGATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCATTTTCCCAGTTCTTACTCCATCTTATATATGTAGAAAGATGG  735

seq1  CCACTGGCCACGACTGCAGCAGGCCCTTCCCCTTACCATTGATTCTTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCACGACTGCAGCAGGCCCTTCCCCTTACCATTGATTCTTTGA  785

seq1  TGTTTTCACTGTTTCACCTTTGGTAGTAGTTTGGTTTCCAGTGCTGTGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACTGTTTCACCTTTGGTAGTAGTTTGGTTTCCAGTGCTGTGAC  835

seq1  AAACTTAGCCTAAGAGAGAAAGTGTTTGTTTGGCTCCCAGTGCCAAGTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGCCTAAGAGAGAAAGTGTTTGTTTGGCTCCCAGTGCCAAGTTA  885

seq1  TAGTTATAGTCCATCACTGTGGAGAAGCCAAGGCAGCTGGAACTAAACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGTCCATCACTGTGGAGAAGCCAAGGCAGCTGGAACTAAACAG  935

seq1  CTAAGTCATATCACAGCCACAGAGCAAAGAGCGAAGAGTTATTGCATGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCATATCACAGCCACAGAGCAAAGAGCGAAGAGTTATTGCATGAA  985

seq1  AGCTAGTGCTTGGCTCACCATCTCTACTCTTATACAGTTGAAGACCAAAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGCTTGGCTCACCATCTCTACTCTTATACAGTTGAAGACCAAAC  1035

seq1  CCAAAGAACAGTCATCCCATCTCCATTAAAGTAATCAAAACCAAAATAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAACAGTCATCCCATCTCCATTAAAGTAATCAAAACCAAAATAAC  1085

seq1  TTCCTACAGACACACCAAAGGCGAGACTTCTTACACAACACTTTATGGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACAGACACACCAAAGGCGAGACTTCTTACACAACACTTTATGGAG  1135

seq1  AATTC  1152
      |||||
seq2  AATTC  1140

seq1: chr14_14276282_14277334
seq2: B6Ng01-043J09.g_70_1137

seq1  GAATTCACCAATAAGGCTAAGCTGATTGCCCAGCAGACAGTACTGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAATAAGGCTAAGCTGATTGCCCAGCAGACAGTACTGGGGTT  50

seq1  CCAGGGCACACTACATTTGTAGGTTTTATTTTTTTATTTTGTATCTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCACACTACATTTGTAGGTTTTATTTTTTTATTTTGTATCTGGAT  100

seq1  ATGTTTGGGTTTTTTATTGGATATTTTCTTTATTTACATTTCAAATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGGTTTTTTATTGGATATTTTCTTTATTTACATTTCAAATGTTA  150

seq1  TACCCTTTTCTGATTTCTCCTCTGAAAAACACCTTCCCTTATTCCCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTTCTGATTTCTCCTCTGAAAAACACCTTCCCTTATTCCCTCCC  200

seq1  TCCTCCCCCTGCTCACCAACCCACCCATTTCCTGGCCTTGGCATTCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCTGCTCACCAACCCACCCATTTCCTGGCCTTGGCATTCCCCA  250

seq1  ATACTGGGGCATAGAGCCTTCATAGGACAAAGGCCCTCTCCTCCCATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGGCATAGAGCCTTCATAGGACAAAGGCCCTCTCCTCCCATTGA  300

seq1  TGTCCTACTAGTAGTTTTAAAACATTTAAAACATTGGTTCTGGAGATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTACTAGTAGTTTTAAAACATTTAAAACATTGGTTCTGGAGATCAA  350

seq1  ACTCAGGTCTATAAGGTTGCTCAACAAGCATTTTACAAACTGAGCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTCTATAAGGTTGCTCAACAAGCATTTTACAAACTGAGCTATCT  400

seq1  CGCCCACCCAGTTGGGCTGGGTTTTGAAGGATCCTTATGAGTTTGTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACCCAGTTGGGCTGGGTTTTGAAGGATCCTTATGAGTTTGTAACC  450

seq1  TACATCCTTGCACTCTTAAAAGGGAAAGTGGCTTTTCAGCAATGCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTTGCACTCTTAAAAGGGAAAGTGGCTTTTCAGCAATGCATTCA  500

seq1  ATGGGGATTTGCTTTAAACCTTGGAGAGTAACTTGAGCAGCGTTTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGATTTGCTTTAAACCTTGGAGAGTAACTTGAGCAGCGTTTGCTGC  550

seq1  CTTCCATGGAGAACAACACTTTCACCTTCTTCATCTCTTAGATAGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGGAGAACAACACTTTCACCTTCTTCATCTCTTAGATAGTGTTG  600

seq1  GTGAACCTAAATCACCTGTGCCCATTCAGCCAGCTGGAGTCCCTGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTAAATCACCTGTGCCCATTCAGCCAGCTGGAGTCCCTGATTCT  650

seq1  GTCAGATAGTCATGGGACTTTGACTATGAGATGAGAGCAGAAAGTATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATAGTCATGGGACTTTGACTATGAGATGAGAGCAGAAAGTATGAC  700

seq1  ACTGAAATCCATACCATTGCCTGAACTAAAAGGATTTTGAAAATGTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCCATACCATTGCCTGAACTAAAAGGATTTTGAAAATGTGCAA  750

seq1  AGGGAACAGCTGTTTTTCCACCCTCCTGTGCTCAGAGTGAAAGGTTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGCTGTTTTTCCACCCTCCTGTGCTCAGAGTGAAAGGTTTAGT  800

seq1  CAGGTTGAACTAATAAGAAGCTTGAAATCCCTTTATAGAGAATAAGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGAACTAATAAGAAGCTTGAAATCCCTTTATAGAGAATAAGTCTG  850

seq1  CCCATGCAGGCAAAAGACACCACTGAGGACTCCCACTTGCAAGATGTT-G  899
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  CCCATGCAGGCAAAAGACACCACTGAGGACTCCCACTTGCAAGTTGTTGG  900

seq1  GGTTAAGAAAAAGACAAGTGTGACAACAGCTGAAAAAAACAAAAGAAAAC  949
      ||| |||||||||||||||||||| ||||||| ||||||||| || ||||
seq2  GGTAAAGAAAAAGACAAGTGTGAC-ACAGCTG-AAAAAACAATAGGAAAC  948

seq1  AAAACAAAACACAGAGTGAAATTGGGACTACCTGAAGGGGGAGGGGCAAC  999
      |||||||||||||||||||||||||||||||||||| ||||  |||||||
seq2  AAAACAAAACACAGAGTGAAATTGGGACTACCTGAAAGGGGGAGGGCAAC  998

seq1  TCCTGAAAGGGATGCAGTGGCTGTTTACTGAGTGACAATAAATAA-ATAA  1048
      | ||| |||| ||||||||||||||| ||||||||||| | |||| ||||
seq2  TTCTGGAAGGAATGCAGTGGCTGTTT-CTGAGTGACAA-ATATAATATAA  1046

seq1  ATAAA-----------------  1053
      || ||                 
seq2  ATTAATCATAATAAATAATAAA  1068