BAC Information

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BAC

Clone NameB6Ng01-044A10
Chromosome14 (Build37)
Map Location 79,973,815 - 80,104,398
singlet/doubletdoublet
Overlap geneElf1, Sugt1, Lect1
Upstream geneDgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, LOC668560
Downstream genePcdh8, EG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A10.bB6Ng01-044A10.g
ACCDH869902DH869903
length1,0021,165
definitionDH869902|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A10, 5' end.DH869903|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,973,815 - 79,974,821)(80,103,240 - 80,104,398)
sequence
gaattcctgtcctctacaagagtagtgcatgctcctaaccgctgagtcat
ctttcacaactgagacactcaggatgcactgaatacggagaatacatggt
attcttcacctgggaaaatcctgttttacaatacttctgaagcttaagtg
ggaaggtcaggagtcaggtctcttcttcaggtgttaatgtgccagacgtt
ggaaagtctcttagtctggtttaatcaaatcagactttaaaaggtgctaa
atatctaattgaccaagaaaaaaatcctatctttaggttggtcttctgaa
aaatttagtactattctcatttgattttagaataaagtaagagatattgg
tctaaaattaagtggatatttatagttcttagggtttgtcttagtttggg
ttactattgttatgaaaaaacactatgactagagtaagttggagaggaaa
gagttttatttggcttacacatccacatcataagccatcactaaatgaag
tcagggcaggaaacagggcaggaaacaggacaggaacctggaggcaggag
ctgatacagatgccatgaaggagtgtgcctcatgacttgctcctcatgac
ttactcagcctgctgtcttacaggacccaggaccatcagcccaggagtga
aaccacccacaatgggctgaccccaccccgacagcctctcatcactaatt
aagaatatgctctacagatgtgtctacagcttgatcatacagaggcattt
tctcaactggggtttcctcttctcagataactctagcttgtgtcaggttg
acataaaaccagtcagcacaggtttcctttctttattctgccatgggttt
ccagaacatgaatatatgtagattttacagggtctgggagaaccactgcc
tcttcagtttgggttactattgctacggtgaaataccatgacccacagcc
agatggggaggaaagggtttatgtaatcattagatttagtttttgggctg
ga
gaattctggaaccttcaccgtaactgctgtctgtgctgctccaggagaag
tctggcagctttacctccaggagaaaaggagagctgtggtggctggaggg
ccgactgctaaagcccgattttgcccactttataaacaattgtttgagtc
gggcctaaacaaggaggacagcaggggacaatagggatgacactatccac
agggacattggcacactgtacatccaacaccctctccaaagtggtcatat
gagcccacggggggacctagctggggtggggtctcagaaaaaaaaaaaaa
aaacagccttgtgagaaaggaacagaaccttctcaggtagaaaaggcagg
gttaccatggcgaccacaaattcttggcccagtggattgagtcttaattc
agagaagcctgcttttccagagggggaaaaaaatgaaataaagcaaatca
gagtcccccctgagctgtggcagccttccacagaggggcggtgtctctgg
cggcctcacaatctaaacagattaaccgccagtgcctcgaggcctgtgaa
aggcgtctgcagaagatgaagtgggttttcatacctgacagtatcccaga
tggagcttagcgtggctttaccaaagaagctgccagaacaaatatgacac
actgctctgacaggatcccgttccagttgtggctctcccgcggccgactg
ccgttggaccctcacaatgctggctttctcctagccagtcggctgtcgtt
tattgacccaagctaagcccctgggctcttggtgctttcctactcaactg
cccacagccatcacagcccgtttcaacagaggctgcgttgtaattccact
tccacggatgaagccctcgcggtctggaaccattgtggcccagtgtgagg
agtcctgacacctcctctttcccagcagccagcgcctcctctgaggccct
agctagccaacatactcggactctcgaaacctagcatgcttcccaaagtc
tagataagaggacaaactacaaggagcttacagtcctccttggcttgacc
ccggtgcccacatattactcagaagatgaaaccagccatccacttacaca
aaacgagattactgcctttttcatgttttacccctggtcctctccacaag
atgccaacaaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_79973815_79974821
seq2: B6Ng01-044A10.b_46_1047

seq1  GAATTCCTGTCCTCTACAAGAGTAGTGCATGCTCCTAACCGCTGAGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTCTACAAGAGTAGTGCATGCTCCTAACCGCTGAGTCAT  50

seq1  CTTTCACAACTGAGACACTCAGGATGCACTGAATACGGAGAATACATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAACTGAGACACTCAGGATGCACTGAATACGGAGAATACATGGT  100

seq1  ATTCTTCACCTGGGAAAATCCTGTTTTACAATACTTCTGAAGCTTAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCACCTGGGAAAATCCTGTTTTACAATACTTCTGAAGCTTAAGTG  150

seq1  GGAAGGTCAGGAGTCAGGTCTCTTCTTCAGGTGTTAATGTGCCAGACGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCAGGAGTCAGGTCTCTTCTTCAGGTGTTAATGTGCCAGACGTT  200

seq1  GGAAAGTCTCTTAGTCTGGTTTAATCAAATCAGACTTTAAAAGGTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTCTTAGTCTGGTTTAATCAAATCAGACTTTAAAAGGTGCTAA  250

seq1  ATATCTAATTGACCAAGAAAAAAATCCTATCTTTAGGTTGGTCTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATTGACCAAGAAAAAAATCCTATCTTTAGGTTGGTCTTCTGAA  300

seq1  AAATTTAGTACTATTCTCATTTGATTTTAGAATAAAGTAAGAGATATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTACTATTCTCATTTGATTTTAGAATAAAGTAAGAGATATTGG  350

seq1  TCTAAAATTAAGTGGATATTTATAGTTCTTAGGGTTTGTCTTAGTTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTAAGTGGATATTTATAGTTCTTAGGGTTTGTCTTAGTTTGGG  400

seq1  TTACTATTGTTATGAAAAAACACTATGACTAGAGTAAGTTGGAGAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGTTATGAAAAAACACTATGACTAGAGTAAGTTGGAGAGGAAA  450

seq1  GAGTTTTATTTGGCTTACACATCCACATCATAAGCCATCACTAAATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTATTTGGCTTACACATCCACATCATAAGCCATCACTAAATGAAG  500

seq1  TCAGGGCAGGAAACAGGGCAGGAAACAGGACAGGAACCTGGAGGCAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGGAAACAGGGCAGGAAACAGGACAGGAACCTGGAGGCAGGAG  550

seq1  CTGATACAGATGCCATGAAGGAGTGTGCCTCATGACTTGCTCCTCATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACAGATGCCATGAAGGAGTGTGCCTCATGACTTGCTCCTCATGAC  600

seq1  TTACTCAGCCTGCTGTCTTACAGGACCCAGGACCATCAGCCCAGGAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGCCTGCTGTCTTACAGGACCCAGGACCATCAGCCCAGGAGTGA  650

seq1  AACCACCCACAATGGGCTGACCCCACCCCGACAGCCTCTCATCACTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCACAATGGGCTGACCCCACCCCGACAGCCTCTCATCACTAATT  700

seq1  AAGAATATGCTCTACAGATGTGTCTACAGCTTGATCATACAGAGGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATGCTCTACAGATGTGTCTACAGCTTGATCATACAGAGGCATTT  750

seq1  TCTCAACTGGGGTTTCCTCTTCTCAGATAACTCTAGCTTGTGTCAGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTGGGGTTTCCTCTTCTCAGATAACTCTAGCTTGTGTCAGGTTG  800

seq1  ACATAAAACCAGTCAGCACAGGTTTCCTTTCTTTATTCTGCCATGGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACCAGTCAGCACAGGTTTCCTTTCTTTATTCTGCCATGGGTTT  850

seq1  CCAGAACATGAATTATATGTAGAATTTTACAGGGTCTGGGAGAACCACTG  900
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  CCAGAACATGAA-TATATGTAG-ATTTTACAGGGTCTGGGAGAACCACTG  898

seq1  CCTCTTCAGTTTGGGTTACTATTGCTACGGTGAAATACCATGACCCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCAGTTTGGGTTACTATTGCTACGGTGAAATACCATGACCCACAG  948

seq1  CCAGATGGGGAGGAAAGGGTTTATGTAAATCATTAAGATTTCAGTTTTTG  1000
      |||||||||||||||||||||||||| ||||||| |||||| ||||||||
seq2  CCAGATGGGGAGGAAAGGGTTTATGT-AATCATT-AGATTT-AGTTTTTG  995

seq1  GGCTGGA  1007
      |||||||
seq2  GGCTGGA  1002

seq1: chr14_80103240_80104398
seq2: B6Ng01-044A10.g_69_1233 (reverse)

seq1  TGTTTTTGTTGGCATCTTGTTGATGAGA-CAGGGGTAAAACATGGAAAAA  49
      |||||||||||||||||||| ||   || ||||||||||||||| |||| 
seq2  TGTTTTTGTTGGCATCTTGTGGAGAGGACCAGGGGTAAAACATGAAAAAG  50

seq1  GCAGT-ATCTCG-TTTGTGT-AGTGGATGGCTGGTATCATCTTCTGGAGT  96
      ||||| |||||| ||||||| |||||||||||||| ||||||||| ||||
seq2  GCAGTAATCTCGTTTTGTGTAAGTGGATGGCTGGTTTCATCTTCT-GAGT  99

seq1  AATATGTGGGCCACGGGGGCCAGCCCAGGAGGACTGTAAGCTCCTTGTAG  146
      |||||||||||  ||||| | |||| ||||||||||||||||||||||||
seq2  AATATGTGGGCACCGGGGTCAAGCCAAGGAGGACTGTAAGCTCCTTGTAG  149

seq1  TTTGTCCTCTTCTCTAGACTTTGGGAAGCATGCTAGGTATCGAGAGTCCG  196
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TTTGTCCTCTTATCTAGACTTTGGGAAGCATGCTAGGTTTCGAGAGTCCG  199

seq1  AGTATGTGTGCTAGCTAGGGCCTCAGAGGAAGCGCTGGCTGCTGGGAAAG  246
      |||||||  ||||||||||||||||||||| |||||||||||||||||||
seq2  AGTATGTTGGCTAGCTAGGGCCTCAGAGGAGGCGCTGGCTGCTGGGAAAG  249

seq1  A-GAGGTGTCAGGACTCCTCACACTGGGCCACAATGGTTCCAGACCGCGA  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGTCAGGACTCCTCACACTGGGCCACAATGGTTCCAGACCGCGA  299

seq1  GGGCTTCATCCGT-GAAGTGGAATTACAACGCAGCCTCTGTTGAAACGGG  344
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATCCGTGGAAGTGGAATTACAACGCAGCCTCTGTTGAAACGGG  349

seq1  CTGTGATGGCTGTGGGCAGTTGAGTAGGAAAGCACCAAGAG-CCAGGGGC  393
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGTGATGGCTGTGGGCAGTTGAGTAGGAAAGCACCAAGAGCCCAGGGGC  399

seq1  TTAGCTTGGGTCAATAAACGACAGCCGACTGGCTAGGAGAAAGCCAGCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGGGTCAATAAACGACAGCCGACTGGCTAGGAGAAAGCCAGCAT  449

seq1  TGTGAGGGTCCAACGGCAGTCGGCCGCGGGAGAGCCACAACTGGAACGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGTCCAACGGCAGTCGGCCGCGGGAGAGCCACAACTGGAACGGG  499

seq1  ATCCTGTCAGAGCAGTGTGTCATATTTGTTCTGGCAGCTTCTTTGGTAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCAGAGCAGTGTGTCATATTTGTTCTGGCAGCTTCTTTGGTAAA  549

seq1  GCCACGCTAAGCTCCATCTGGGATACTGTCAGGTATGAAAACCCACTTCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGCTAAGCTCCATCTGGGATACTGTCAGGTATGAAAACCCACTTCA  599

seq1  TCTTCTGCAGACGCCTTTCACAGGCCTCGAGGCACTGGCGGTTAATCTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCAGACGCCTTTCACAGGCCTCGAGGCACTGGCGGTTAATCTGT  649

seq1  TTAGATTGTGAGGCCGCCAGAGACACCGCCCCTCTGTGGAAGGCTGCCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTGTGAGGCCGCCAGAGACACCGCCCCTCTGTGGAAGGCTGCCAC  699

seq1  AGCTCAGGGGGGACTCTGATTTGCTTTATTTCATTTTTTTCCCCCTCTGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGGGGACTCTGATTTGCTTTATTTCATTTTTTTCCCCCTCTGG  749

seq1  AAAAGCAGGCTTCTCTGAATTAAGACTCAATCCACTGGGCCAAGAATTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGGCTTCTCTGAATTAAGACTCAATCCACTGGGCCAAGAATTTG  799

seq1  TGGTCGCCATGGTAACCCTGCCTTTTCTACCTGAGAAGGTTCTGTTCCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGCCATGGTAACCCTGCCTTTTCTACCTGAGAAGGTTCTGTTCCTT  849

seq1  TCTCACAAGGCTGTTTTTTTTTTTTTTTTCTGAGACCCCACCCCAGCTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAGGCTGTTTTTTTTTTTTTTTTCTGAGACCCCACCCCAGCTAG  899

seq1  GTCCCCCCGTGGGCTCATATGACCACTTTGGAGAGGGTGTTGGATGTACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCGTGGGCTCATATGACCACTTTGGAGAGGGTGTTGGATGTACA  949

seq1  GTGTGCCAATGTCCCTGTGGATAGTGTCATCCCTATTGTCCCCTGCTGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCAATGTCCCTGTGGATAGTGTCATCCCTATTGTCCCCTGCTGTC  999

seq1  CTCCTTGTTTAGGCCCGACTCAAACAATTGTTTATAAAGTGGGCAAAATC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGTTTAGGCCCGACTCAAACAATTGTTTATAAAGTGGGCAAAATC  1049

seq1  GGGCTTTAGCAGTCGGCCCTCCAGCCACCACAGCTCTCCTTTTCTCCTGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTAGCAGTCGGCCCTCCAGCCACCACAGCTCTCCTTTTCTCCTGG  1099

seq1  AGGTAAAGCTGCCAGACTTCTCCTGGAGCAGCACAGACAGCAGTTACGGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGCTGCCAGACTTCTCCTGGAGCAGCACAGACAGCAGTTACGGT  1149

seq1  GAAGGTTCCAGAATTC  1159
      ||||||||||||||||
seq2  GAAGGTTCCAGAATTC  1165