BAC Information

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BAC

Clone NameB6Ng01-044N07
Chromosome14 (Build37)
Map Location 27,133,568 - 27,241,446
singlet/doubletdoublet
Overlap geneLOC100039538, 4933413J09Rik, Slmap
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527
Downstream geneLOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044N07.bB6Ng01-044N07.g
ACCDH870472DH870473
length1,1561,068
definitionDH870472|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N07, 5' end.DH870473|Mus musculus domesticus DNA, BAC clone: B6Ng01-044N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,240,286 - 27,241,446)(27,133,568 - 27,134,642)
sequence
gaattcaaggctaggctggtttatataatgaaccctggctcaaaacacca
aagtaaagcgtatatacagataggcatggtaatacacagccacaatctta
gcactttggaggtagagcaggaaaattaggagttcaaggccagcctcagc
aacatagtgagtttgagatcagctacatgagatcctgtgtcagaaaacaa
acaagaaagaagttacttgaaattcacctatatataggccaaatgcctgt
tctgtaaaactgcattttccccctctgctttcttttcatcttcacaaaca
cacacacacttatattttcatatgattttgcttaaaccttgatttcatta
gctttttaaataattgtgttaaggagggtgtgagatcaactttgggaagg
acctactctcggtctttctgggcaggatagatctgtttccttaaagctga
caacaggccagtacatggtcgcttcagctggccttcctgcactgatccct
gcctgcccagctcaggacgcacgttgataaagcctgtctgtccataagga
agcaccagctgcagacatgagcaagatccctgctgagttacagggatgta
gaagacagctctttcgtctttaggaatgaattttctgaaagttgttttta
gaaattttgattaatgcaagttttctctttgcactttgcctggagtgtcc
tgaatttggaaatgattactgttcttctgtctctgtgcttgtttctaaag
gaaaaacaaactgcaacacctttcctctttgtgtcgatgttgatgtggaa
aatgttccgttaccgggctaaggatgtatattttaggaaaatcttcattt
gataaaacacaaattttgtgccaaagtaaatatcttaatatttaatgctg
taagcagtttgtcttcttccagggcatgcgccataatttctttcagtatt
tggaagaacctggtggctgggagatgatccggtcctgtgttactatgaaa
cattaggcattttgttgcattgtttctttgtctgcttcagtcactgatta
tcagtgcaaagcttgactgttccccaaatggcaaaggcattgttgtccga
gcatcgagactgtgccgggtctttggatggcattatgcagcattattgaa
agtatg
gaattcaagtagaggcatttgtccctcccctgattggctaggagaaaagt
gtcatccttgtcatacaggcagagcaatggccttaataagattctagccc
tgattagtgaggggctgagagaagggtggctgtaggggccgagcaggagt
accattcactcgcgccctctgcccctctgcgacagtggcagtagagagtg
agcagcaggtgaggctgcatcttcatcagtgacagctcaggtcctgttcc
ctggccagaagctggagcagcagctctgccttggcgcttcctgcctcctc
atccagtagctgttgccccaggctcagtgccctcggggccacgacctagg
tttcatgctgaggttccataatggctagcctgccccatcccacctagttc
tgtgggataatagccaaaactctctgagacatcctgcatactgagcttgg
cagcagcctaggacactgtagtcaagaggtggcagggctcacaatgagag
caacagagggagatattctagtttatatgaggaatgagaaacctgatgct
ctgcttctgtggacgaaaacctagcagccccatccacatgaaaaatagag
gacaatttgtgggaagtttgttttctccttcaagtcagtgaatcccaggg
aagaaaatcaggtttgtaggcctgtatgcaagttccaaaacctgctgagc
catcttgaaagctgaacacactagccatggaattgaatgaactatatatg
tatgttgatgctctctgtgtgtagatatagcctttattcataaagaacag
attctttttaccattgggtttgacagcatgattctggtgaccaataggat
tacatcctctagacattaactctctgacccaggtttgttacagagtcatt
ccacacagatccattttcaggttgttttacaggaataaagcactcattgg
aagaaacacttcctaaaactctcaatgtacactgagcattcattggtagc
atcaatcatccccctcccctaaaatggggggctactaaatgggggctaga
aatgaaaatgacggtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27240286_27241446
seq2: B6Ng01-044N07.b_44_1199 (reverse)

seq1  CATACTTTTAAATATGCTGCATTTAATGCAATCCAAAGACCAGCAACAGT  50
      |||||||| ||  ||||||||  |||||| ||||||||||| |  |||||
seq2  CATACTTTCAATAATGCTGCA--TAATGCCATCCAAAGACCCGGCACAGT  48

seq1  CTCGATGCTGCGACAAC-ATGCCTCTGCCATTTGTGGAAACAGTCAAAGC  99
      |||||||||  |||||| |||||| ||||||||| || ||||||| ||||
seq2  CTCGATGCTCGGACAACAATGCCTTTGCCATTTG-GGGAACAGTC-AAGC  96

seq1  ATTTGGCACTGATTATTCAGTGACTGGAAGCAGACAAAGAAACAATGCAA  149
        || ||||||| || ||||||||| ||||||||||||||||||||||||
seq2  --TTTGCACTGA-TAATCAGTGACT-GAAGCAGACAAAGAAACAATGCAA  142

seq1  CAAAATGCCTAATGTTTCATAGTAACACAGGACAGGATCATCTTCCAGCC  199
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  CAAAATGCCTAATGTTTCATAGTAACACAGGACCGGATCATCTCCCAGCC  192

seq1  A-CAGGTTCTTCCCAAATACTGAAAG-AATTATGGCGCATGGCCTGGAAG  247
      | ||||||||| |||||||||||||| |||||||||||||| ||||||||
seq2  ACCAGGTTCTT-CCAAATACTGAAAGAAATTATGGCGCATGCCCTGGAAG  241

seq1  AAGACAAACTGCTTACAGCATTAAATATTAAGATATTTACTTTGGCACAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACTGCTTACAGCATTAAATATTAAGATATTTACTTTGGCACAA  291

seq1  AATTTGTGTTTTAATCAAATGAAGATTTTCCTAAAATATACATCCTTAGC  347
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGTTTT-ATCAAATGAAGATTTTCCTAAAATATACATCCTTAGC  340

seq1  CCGGTAACGGAACA-TTTCCACATCAACATCGACACAAAGAGGAAAGGTG  396
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCGGTAACGGAACATTTTCCACATCAACATCGACACAAAGAGGAAAGGTG  390

seq1  TTGCAGTTTGTTTTTCCTTTAGAAACAAGCACAGAGACAGAAGAACAGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTGTTTTTCCTTTAGAAACAAGCACAGAGACAGAAGAACAGTA  440

seq1  ATCATTTCCAAATTCAGGACACTCCAGGCAAAGTGCAAAGAG-AAACTTG  495
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCATTTCCAAATTCAGGACACTCCAGGCAAAGTGCAAAGAGAAAACTTG  490

seq1  CATTAATCAAAATTTCTAAAAACAACTTTCAGAAAATTCATTCCTAAAGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATCAAAATTTCTAAAAACAACTTTCAGAAAATTCATTCCTAAAGA  540

seq1  CGAAAGAGCTGTCTTCTACATCCCTGTAACTCAGCAGGGATCTTGCTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAGCTGTCTTCTACATCCCTGTAACTCAGCAGGGATCTTGCTCAT  590

seq1  GTCTGCAGCTGGTGCTTCCTTATGGACAGACAGGCTTTATCAACGTGCGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGCTGGTGCTTCCTTATGGACAGACAGGCTTTATCAACGTGCGT  640

seq1  CCTGAGCTGGGCAGGCAGGGATCAGTGCAGGAAGGCCAGCTGAAGCGACC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTGGGCAGGCAGGGATCAGTGCAGGAAGGCCAGCTGAAGCGACC  690

seq1  ATGTACTGGCCTGTTGTCAGCTTTAAGGAAACAGATCTATCCTGCCCAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGGCCTGTTGTCAGCTTTAAGGAAACAGATCTATCCTGCCCAGA  740

seq1  AAGACCGAGAGTAGGTCCTTCCCAAAGTTGATCTCACACCCTCCTTAACA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCGAGAGTAGGTCCTTCCCAAAGTTGATCTCACACCCTCCTTAACA  790

seq1  CAATTATTTAAAAAGCTAATGAAATCAAGGTTTAAGCAAAATCATATGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTTAAAAAGCTAATGAAATCAAGGTTTAAGCAAAATCATATGAA  840

seq1  AATATAAGTGTGTGTGTGTTTGTGAAGATGAAAAGAAAGCAGAGGGGGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGTGTGTGTGTGTTTGTGAAGATGAAAAGAAAGCAGAGGGGGAA  890

seq1  AATGCAGTTTTACAGAACAGGCATTTGGCCTATATATAGGTGAATTTCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTTTTACAGAACAGGCATTTGGCCTATATATAGGTGAATTTCAA  940

seq1  GTAACTTCTTTCTTGTTTGTTTTCTGACACAGGATCTCATGTAGCTGATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTTTCTTGTTTGTTTTCTGACACAGGATCTCATGTAGCTGATC  990

seq1  TCAAACTCACTATGTTGCTGAGGCTGGCCTTGAACTCCTAATTTTCCTGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCACTATGTTGCTGAGGCTGGCCTTGAACTCCTAATTTTCCTGC  1040

seq1  TCTACCTCCAAAGTGCTAAGATTGTGGCTGTGTATTACCATGCCTATCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCAAAGTGCTAAGATTGTGGCTGTGTATTACCATGCCTATCTG  1090

seq1  TATATACGCTTTACTTTGGTGTTTTGAGCCAGGGTTCATTATATAAACCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACGCTTTACTTTGGTGTTTTGAGCCAGGGTTCATTATATAAACCA  1140

seq1  GCCTAGCCTTGAATTC  1161
      ||||||||||||||||
seq2  GCCTAGCCTTGAATTC  1156

seq1: chr14_27133568_27134642
seq2: B6Ng01-044N07.g_68_1135

seq1  GAATTCAAGTAGAGGCATTTGTCCCTCCCCTGATTGGCTAGGAGAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGAGGCATTTGTCCCTCCCCTGATTGGCTAGGAGAAAAGT  50

seq1  GTCATCCTTGTCATACAGGCAGAGCAATGGCCTTAATAAGATTCTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTTGTCATACAGGCAGAGCAATGGCCTTAATAAGATTCTAGCCC  100

seq1  TGATTAGTGAGGGGCTGAGAGAAGGGTGGCTGTAGGGGCCGAGCAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAGTGAGGGGCTGAGAGAAGGGTGGCTGTAGGGGCCGAGCAGGAGT  150

seq1  ACCATTCACTCGCGCCCTCTGCCCCTCTGCGACAGTGGCAGTAGAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCACTCGCGCCCTCTGCCCCTCTGCGACAGTGGCAGTAGAGAGTG  200

seq1  AGCAGCAGGTGAGGCTGCATCTTCATCAGTGACAGCTCAGGTCCTGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGGTGAGGCTGCATCTTCATCAGTGACAGCTCAGGTCCTGTTCC  250

seq1  CTGGCCAGAAGCTGGAGCAGCAGCTCTGCCTTGGCGCTTCCTGCCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGAAGCTGGAGCAGCAGCTCTGCCTTGGCGCTTCCTGCCTCCTC  300

seq1  ATCCAGTAGCTGTTGCCCCAGGCTCAGTGCCCTCGGGGCCACGACCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTAGCTGTTGCCCCAGGCTCAGTGCCCTCGGGGCCACGACCTAGG  350

seq1  TTTCATGCTGAGGTTCCATAATGGCTAGCCTGCCCCATCCCACCTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTGAGGTTCCATAATGGCTAGCCTGCCCCATCCCACCTAGTTC  400

seq1  TGTGGGATAATAGCCAAAACTCTCTGAGACATCCTGCATACTGAGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATAATAGCCAAAACTCTCTGAGACATCCTGCATACTGAGCTTGG  450

seq1  CAGCAGCCTAGGACACTGTAGTCAAGAGGTGGCAGGGCTCACAATGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTAGGACACTGTAGTCAAGAGGTGGCAGGGCTCACAATGAGAG  500

seq1  CAACAGAGGGAGATATTCTAGTTTATATGAGGAATGAGAAACCTGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGGGAGATATTCTAGTTTATATGAGGAATGAGAAACCTGATGCT  550

seq1  CTGCTTCTGTGGACGAAAACCTAGCAGCCCCATCCACATGAAAAATAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTGGACGAAAACCTAGCAGCCCCATCCACATGAAAAATAGAG  600

seq1  GACAATTTGTGGGAAGTTTGTTTTCTCCTTCAAGTCAGTGAATCCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGTGGGAAGTTTGTTTTCTCCTTCAAGTCAGTGAATCCCAGGG  650

seq1  AAGAAAATCAGGTTTGTAGGCCTGTATGCAAGTTCCAAAACCTGCTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCAGGTTTGTAGGCCTGTATGCAAGTTCCAAAACCTGCTGAGC  700

seq1  CATCTTGAAAGCTGAACACACTAGCCATGGAATTGAATGAACTATATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGAAAGCTGAACACACTAGCCATGGAATTGAATGAACTATATATG  750

seq1  TATGTTGATGCTCTCTGTGTGTAGATATAGCCTTTATTCATAAAGAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGATGCTCTCTGTGTGTAGATATAGCCTTTATTCATAAAGAACAG  800

seq1  ATTCTTTTTACCATT-GGTTTGACAGCATGATTCTGGTGACCAATAGGAT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTACCATTGGGTTTGACAGCATGATTCTGGTGACCAATAGGAT  850

seq1  TACATCCTCTAGACATTAACTCTCTGACCCAGGTTTGTTACAGAAGTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACATCCTCTAGACATTAACTCTCTGACCCAGGTTTGTTACAG-AGTCAT  899

seq1  TCCACACAGATCCATTTCAGGGTTGTTTTACAGGAATAAAGCACTCATTG  949
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TCCACACAGATCCATTTTCAGGTTGTTTTACAGGAATAAAGCACTCATTG  949

seq1  GAAGAAACACTTCCTTAAAACTCTCAATGTACACTGAGCATTCATTGGGT  999
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GAAGAAACACTTCC-TAAAACTCTCAATGTACACTGAGCATTCATT-GGT  997

seq1  AGCATCAATCATCCCCCTCCCCTAAAAAGGGGGGCTACCTAAAAAGGGGG  1049
      ||||||||||||||||||||||||||| ||||||||||    ||| ||||
seq2  AGCATCAATCATCCCCCTCCCCTAAAATGGGGGGCTAC---TAAATGGGG  1044

seq1  GCTAGAAATGAAAAAGGACGGGTGCA  1075
      |||||||||| |||| ||| ||||||
seq2  GCTAGAAATG-AAAATGAC-GGTGCA  1068