BAC Information

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BAC

Clone NameB6Ng01-045F01
Chromosome14 (Build37)
Map Location 83,752,779 - 83,843,668
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045F01.bB6Ng01-045F01.g
ACCDH870804DH870805
length1,0121,170
definitionDH870804|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F01, 5' end.DH870805|Mus musculus domesticus DNA, BAC clone: B6Ng01-045F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,752,779 - 83,753,806)(83,842,463 - 83,843,668)
sequence
gaattcaagaatatggactccagataattaaataaccttactaaaaaggg
ggtacagaactaaacaagaattctcaactgaggaatactgaatggctgag
gagcacctctaaaaatgatcaacatccttaatcattaaggaaatgcaaat
caaaacaaccctgagattctacctgaaattttcttaaatggcattaagaa
tttgaactcagctcatcatccttgtacatgaagtggccatgtacactacc
ttcatcacttttctattgctgtgtagagactccataaccaaagcaactct
tattaaaaacaacattaaatctgggtcttgcttacagtgttacagtttta
gtcaatgattaatatgatggaaacagacaaggaagcagtcacttagagct
ctgagtcctaattgccagttaataggcagcaaagaaagaaaccctgggcc
tggtgtgaggtttagaaacctcaaagcccactaccaatgacagactctaa
caaaattaagccacccagttctcctgaagctgttcttctatctggtaact
aaacattaaaatatatgaccatatggggactttctcatacaaagcactat
acacaccaagcagcaccttactccttactagtatctcaagttttactata
cgcttatgtgtatattgaactatgctcttgatttttaaggcagcttgaag
cgacagataggtatataagacaattttggattattctcttctcactggca
aatgaaaagcattttatatactcatatgcatttacatgttgcaatcaaat
gtctgaattttggcatccaatttaaatggctattgaacaatgcctgtggt
tgcactgcagtttcctaaatatacaagatcttctgagttcctgatctaga
tatgctttctccacaccctttgttgcctttctatggggtctttatgttat
tttgagcataaatgttattattattatagagagtaaataaatgaatgagt
ataggagtgagg
gaattcaatgcctttaagcacagtgctgcaggacatttcaaaatcactgt
taatgcttcagagaatggatgaggatcaaatgaattgcatacattacata
taaatggaacaagaaataagcaaacgtgaagaatatgctttcaaaaatgt
tgctattttataaacaacagcaatcatttcctcatgttcctgggctattg
aatttcaaacaaacctaagaaaaactaaagcaaggaggtttactgcacct
attctatcattgagtccaatgccccccaaggtcttaaaagcctgtgattg
acagtatcaaggcacctcttgtttcttttcttctaccagctcagaactcc
tagcaactaaacatttttttccaaaataaatgcatacatatacatgcatt
tgtatatgtatctagaaaatcaatttcttaactctattcattaagaatga
tgagagttgttctatcacaattcctaccataaacagtgacactattagga
ggttgtttttttttttttcttttaagcaaaataatctttacttattgata
gatttgctagttaaatagccaaggtgataactagtatattttaagtgtta
aatatttcataaagctgaagacagctcaagtgagtaaatgtgtatcgtga
agaggaatatatcatagcaagtagactgtaatagagaaaggtgctgaaca
aacaaaccgtcagatgagtaagatttatcaagaactctgaagaatgtgtg
gtgcaaataatggatggcatgctatgaaaacctttgctgtgtcttggctg
cagtgtcttagatataaaacatcataatatatacattttacaaatgttta
ttatataaatatgatcgtcacacatcagacactccatttcactgaatcac
atgtgctaattttattcttgcaaatttgttgaaaagtagtttatttctgg
tgtaaatagcactatgatttctaatacatttatagagatactctgatgct
agaacttctggcactgcagatgcagctgtgaaaagcaagacaacaataca
ttgctgaatgcatgtgtttctgacctggcttctttggacctttcttctga
ctctaattctcttttagggctcaagattctacttaactggcaatatttgc
tcgtttaagcaatttgatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_83752779_83753806
seq2: B6Ng01-045F01.b_41_1052

seq1  GAATTCAAGAATATGGACTCCAGATAATTAAATAACCTTACTAAAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATATGGACTCCAGATAATTAAATAACCTTACTAAAAAGGG  50

seq1  GGTACAGAACTAAACAAGAATTCTCAACTGAGGAATACTGAATGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGAACTAAACAAGAATTCTCAACTGAGGAATACTGAATGGCTGAG  100

seq1  GAGCACCTCTAAAAATGATCAACATCCTTAATCATTAAGGAAATGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTCTAAAAATGATCAACATCCTTAATCATTAAGGAAATGCAAAT  150

seq1  CAAAACAACCCTGAGATTCTACCTGAAATTTTCTTAAATGGCATTAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAACCCTGAGATTCTACCTGAAATTTTCTTAAATGGCATTAAGAA  200

seq1  TTTGAACTCAGCTCATCATCCTTGTACATGAAGTGGCCATGTACACTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAGCTCATCATCCTTGTACATGAAGTGGCCATGTACACTACC  250

seq1  TTCATCACTTTTCTATTGCTGTGTAGAGACTCCATAACCAAAGCAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTTTTCTATTGCTGTGTAGAGACTCCATAACCAAAGCAACTCT  300

seq1  TATTAAAAACAACATTAAATCTGGGTCTTGCTTACAGTGTTACAGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAACAACATTAAATCTGGGTCTTGCTTACAGTGTTACAGTTTTA  350

seq1  GTCAATGATTAATATGATGGAAACAGACAAGGAAGCAGTCACTTAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGATTAATATGATGGAAACAGACAAGGAAGCAGTCACTTAGAGCT  400

seq1  CTGAGTCCTAATTGCCAGTTAATAGGCAGCAAAGAAAGAAACCCTGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCTAATTGCCAGTTAATAGGCAGCAAAGAAAGAAACCCTGGGCC  450

seq1  TGGTGTGAGGTTTAGAAACCTCAAAGCCCACTACCAATGACAGACTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGGTTTAGAAACCTCAAAGCCCACTACCAATGACAGACTCTAA  500

seq1  CAAAATTAAGCCACCCAGTTCTCCTGAAGCTGTTCTTCTATCTGGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAGCCACCCAGTTCTCCTGAAGCTGTTCTTCTATCTGGTAACT  550

seq1  AAACATTAAAATATATGACCATATGGGGACTTTCTCATACAAAGCACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAAAATATATGACCATATGGGGACTTTCTCATACAAAGCACTAT  600

seq1  ACACACCAAGCAGCACCTTACTCCTTACTAGTATCTCAAGTTTTACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAAGCAGCACCTTACTCCTTACTAGTATCTCAAGTTTTACTATA  650

seq1  CGCTTATGTGTATATTGAACTATGCTCTTGATTTTTAAGGCAGCTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTATGTGTATATTGAACTATGCTCTTGATTTTTAAGGCAGCTTGAAG  700

seq1  CGACAGATAGGTATATAAGACAATTTTGGATTATTCTCTTCTCACTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGATAGGTATATAAGACAATTTTGGATTATTCTCTTCTCACTGGCA  750

seq1  AATGAAAAGCATTTTATATACTCATATGCATTTACATGTTGCAATCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGCATTTTATATACTCATATGCATTTACATGTTGCAATCAAAT  800

seq1  GTCTGAATTTTGGCAATCCAATTTAAATGGCTATTGAACAAATGCCTGTG  850
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GTCTGAATTTTGGC-ATCCAATTTAAATGGCTATTGAAC-AATGCCTGTG  848

seq1  GTTGCACTGCAAGTTTCCTAAATATAACAAGATCTTCTGAGTTCCTGATC  900
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GTTGCACTGC-AGTTTCCTAAATAT-ACAAGATCTTCTGAGTTCCTGATC  896

seq1  TAGATATTGCTTTCT-CACACCCTTTGTTGCCTTTCTATGGGGGTCTTTA  949
      |||||| |||||||| ||||||||||||||||||||||| ||||||||||
seq2  TAGATA-TGCTTTCTCCACACCCTTTGTTGCCTTTCTAT-GGGGTCTTTA  944

seq1  TGTTATTTTGAGCATTAAATGTTATTTATTTATTTATAGAGAGTAAAATA  999
      |||||||||||||| ||||||||| |||||   ||||||||||||||   
seq2  TGTTATTTTGAGCA-TAAATGTTA-TTATT--ATTATAGAGAGTAAA--T  988

seq1  AAATGAAATGAGTAATTAGGAAGGTGAGG  1028
      ||||| ||||||||  |||||  ||||||
seq2  AAATG-AATGAGTA--TAGGA--GTGAGG  1012

seq1: chr14_83842463_83843668
seq2: B6Ng01-045F01.g_66_1235 (reverse)

seq1  TAATCACATATGCTTAAAC-AGCATAAAATAATTGCCAGTTTAAAGCTAG  49
      |||||| || ||||||||| |||   |||| ||||||||||  ||| |||
seq2  TAATCAAAT-TGCTTAAACGAGC---AAAT-ATTGCCAGTT--AAG-TAG  42

seq1  ACATTCTTTTGAGCCCTATAAGAGATATAGAGTCAGGAAGGAAAGGGTCC  99
      |     | |||||||||| ||||||  |||||||| ||||  || |||||
seq2  A----ATCTTGAGCCCTAAAAGAGAATTAGAGTCA-GAAG--AAAGGTCC  85

seq1  CAAAAAGAAGCCAGTGTCAGAAACACATGCTATTCAGCAATGTATTGTTT  149
         ||||||||||| ||||||||||||||| |||||||||||||||||| 
seq2  ---AAAGAAGCCAG-GTCAGAAACACATGC-ATTCAGCAATGTATTGTT-  129

seq1  GTTCTTGGCTTTTTCACAGCTGCATCTGCAGTTGCCAGAAGTTTCTAGCA  199
        |||||   ||||||||||||||||||||| ||||||||| ||||||||
seq2  -GTCTTG--CTTTTCACAGCTGCATCTGCAG-TGCCAGAAG-TTCTAGCA  174

seq1  TCAGGAGTATCTCCTATAAATGTA-TAGATATCATTAGTTGCTTATTTTA  248
      ||| |||||||| ||||||||||| |||| |||| ||| ||||   ||||
seq2  TCA-GAGTATCT-CTATAAATGTATTAGAAATCA-TAG-TGCT--ATTTA  218

seq1  CACCCAGAAATTAAAACTACTTTTTCAACACAATTTTGCAAGAATAAAAT  298
      || ||||||||  ||||||| ||||||  |||| ||||||||||||||||
seq2  CA-CCAGAAAT--AAACTAC-TTTTCA--ACAAATTTGCAAGAATAAAAT  262

seq1  TAGCAACATGTGATTCAGTGGAATGGAGTGTCTGATGTGTGACGATCATA  348
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGC-ACATGTGATTCAGTGAAATGGAGTGTCTGATGTGTGACGATCATA  311

seq1  -TTATATAATATACATTTGTGAAATGTATATATTATGATGTTTTATATCT  397
       |||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  TTTATATAATAAACATTTGTAAAATGTATATATTATGATGTTTTATATCT  361

seq1  AAGACACTGCAGCCAAGACACAGCAAAGGTTTTCATAGCATGCCATCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGACACTGCAGCCAAGACACAGCAAAGGTTTTCATAGCATGCCATCCAT  411

seq1  TATTTGCACCACACATTCTTCAGAGTTCTTGATAAATCTTACTCATCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCACCACACATTCTTCAGAGTTCTTGATAAATCTTACTCATCTGA  461

seq1  CGGTTTGTTTGTTCAGCACCTTTCTCTATTACAGTCTACTTGCTATGATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTGTTTGTTCAGCACCTTTCTCTATTACAGTCTACTTGCTATGATA  511

seq1  TATTCCTCTTCACGATACACATTTACTCACTTGAGCTGTCTTCAGCTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTCTTCACGATACACATTTACTCACTTGAGCTGTCTTCAGCTTTA  561

seq1  TGAAATATTTAACACTTAAAATATACTAGTTATCACCTTGGCTATTTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTTAACACTTAAAATATACTAGTTATCACCTTGGCTATTTAAC  611

seq1  TAGCAAATCTATCAATAAGTAAAGATTATTTTGCTTAAAAGAAAAAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATCTATCAATAAGTAAAGATTATTTTGCTTAAAAGAAAAAAAAA  661

seq1  AAAACAACCTACTAATAGTGTCACTGTTTATGGTAGGAATTGTGATAGAA  747
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCTCCTAATAGTGTCACTGTTTATGGTAGGAATTGTGATAGAA  711

seq1  CAACTCTCATCATTCTTAATGAATAGAGTTAAGAAATTGATTTTCTAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCATCATTCTTAATGAATAGAGTTAAGAAATTGATTTTCTAGAT  761

seq1  ACATATACAAATGCATGTATATGTATGCATTTATTTTGGAAAAAAATGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACAAATGCATGTATATGTATGCATTTATTTTGGAAAAAAATGTT  811

seq1  TAGTTGCTAGGAGTTCTGAGCTGGTAGAAGAAAAGAAACAAGAGGTGCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTAGGAGTTCTGAGCTGGTAGAAGAAAAGAAACAAGAGGTGCCT  861

seq1  TGATACTGTCAATCACAGGCTTTTAAGACCTTGGGGGGCATTGGACTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGTCAATCACAGGCTTTTAAGACCTTGGGGGGCATTGGACTCAA  911

seq1  TGATAGAATAGGTGCAGTAAACCTCCTTGCTTTAGTTTTTCTTAGGTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAATAGGTGCAGTAAACCTCCTTGCTTTAGTTTTTCTTAGGTTTG  961

seq1  TTTGAAATTCAATAGCCCAGGAACATGAGGAAATGATTGCTGTTGTTTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATTCAATAGCCCAGGAACATGAGGAAATGATTGCTGTTGTTTAT  1011

seq1  AAAATAGCAACATTTTTGAAAGCATATTCTTCACGTTTGCTTATTTCTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAACATTTTTGAAAGCATATTCTTCACGTTTGCTTATTTCTTG  1061

seq1  TTCCATTTATATCTAATCTATGCAATTCATTTGATCCTCATCCATTCTCT  1147
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  TTCCATTTATATGTAATGTATGCAATTCATTTGATCCTCATCCATTCTCT  1111

seq1  GAAGCATTAACAGTGATTTTGAAATGTCCTGCAGCACTGTGCTTAAAGGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTAACAGTGATTTTGAAATGTCCTGCAGCACTGTGCTTAAAGGC  1161

seq1  ATTGAATTC  1206
      |||||||||
seq2  ATTGAATTC  1170