BAC Information

Click to search

BAC

Clone NameB6Ng01-046C05
Chromosome14 (Build37)
Map Location 114,020,303 - 114,021,413
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046C05.g
ACCDH871395
length1,088
definitionDH871395|Mus musculus domesticus DNA, BAC clone: B6Ng01-046C05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccattaaacaaattccaataataaaaacacagaaaggttataaag
aaggaatttcaacatttatcactacctaaagttttaataaagctaattaa
aatcctttctcattttcacagaaggtaatagtttcaatcaagtgtctaat
aactctttcaaaaacctattaaaatagcaatgtgtttttataccaagtat
caattttcagcatgatttatctaccaaaattttaagagtaaaatattaac
tactcatcacatgagttataccagaggcatctataagttgctgtttttag
agtaaagtgtatttaaatatttaatttggaactactcagaactatgacaa
tatttggaagataatctgctcttccctttggctggaggcatgccacctgt
tagcatgtacactacctgttaatggttataaagtcgcacttacagtgtct
tgaacacaaagagaggtaaacattgtaagtagaaagttggagctgcttgc
tcttctggcagatcattgggttaatactcactgccctcagaccctcattt
gataaagatgtcctcaccattaactgtgaatcatgttccagtgttcattg
ttctttcttagatcttcagtttttaacctctggaagtttagagtcttgtg
gtttgtaaaggagatactgggctttgtggcacctgatttcataatagcct
tttcttagtctaatattaaacttaatatatttcttgaaagtggctctact
tccttttctatgagtagtgtttcactccatggcactcattcaaaacatat
gtaacagtgaacactattcaaactattcaggtgctatacgaagaaaactt
ccaaataatgacagaacgctgtcaggtgtgccactcaatattgagtttat
ataattttacacactttgggtttatcaacatttattattttaccttataa
tatatggaatcattgaatttagtttttaattttgatttaatatgcctcaa
aatttctacttgtctgtccaaatccaagggccggtaatatttatttatat
aagctagcatttcctactgcaaagaagatccattttat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114020303_114021413
seq2: B6Ng01-046C05.g_66_1153

seq1  GAATTCCATTAAACAAATTCCAATAATAAAAACACAGAAAGGTTATAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAACAAATTCCAATAATAAAAACACAGAAAGGTTATAAAG  50

seq1  AAGGAATTTCAACATTTATCACTACCTAAAGTTTTAATAAAGCTAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTTCAACATTTATCACTACCTAAAGTTTTAATAAAGCTAATTAA  100

seq1  AATCCTTTCTCATTTTCACAGAAGGTAATAGTTTCAATCAAGTGTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTCTCATTTTCACAGAAGGTAATAGTTTCAATCAAGTGTCTAAT  150

seq1  AACTCTTTCAAAAACCTATTAAAATAGCAATGTGTTTTTATACCAAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCAAAAACCTATTAAAATAGCAATGTGTTTTTATACCAAGTAT  200

seq1  CAATTTTCAGCATGATTTAGCTACCAAAATTTTAAGAGTAAAATATTAAC  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATTTTCAGCATGATTTATCTACCAAAATTTTAAGAGTAAAATATTAAC  250

seq1  TACTCATCACATGAGTTATACCAGAGGCATCTATAAGTTGCTGTTTTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATCACATGAGTTATACCAGAGGCATCTATAAGTTGCTGTTTTTAG  300

seq1  AGTAAAGTGTATTTAAATATTTAATTTGGAACTACTCAGAACTATGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGTATTTAAATATTTAATTTGGAACTACTCAGAACTATGACAA  350

seq1  TATTTGGAAGATAATCTGCTCTTCCCTTTGGCTGGAGGCATGCCACCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAAGATAATCTGCTCTTCCCTTTGGCTGGAGGCATGCCACCTGT  400

seq1  TAGCATGTACACTACCTGTTAATGGTTATAAAGTCGCACTTACAGTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTACACTACCTGTTAATGGTTATAAAGTCGCACTTACAGTGTCT  450

seq1  TGAACACAAAGAGAGGTAAACATTGTAAGTAGAAAGTTGGAGCTGCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAAAGAGAGGTAAACATTGTAAGTAGAAAGTTGGAGCTGCTTGC  500

seq1  TCTTCTGGCAGATCATTGGGTTAATACTCACTGCCCTCAGACCCTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCAGATCATTGGGTTAATACTCACTGCCCTCAGACCCTCATTT  550

seq1  GATAAAGATTTCCTCACCATTAACTGTGAATCAGGTTCCAGTGTTCATTG  600
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  GATAAAGATGTCCTCACCATTAACTGTGAATCATGTTCCAGTGTTCATTG  600

seq1  TTCTTTCTTAGATCTTCAGTTTTTAACCTCTGGAAGTTTAGAGTCTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTAGATCTTCAGTTTTTAACCTCTGGAAGTTTAGAGTCTTGTG  650

seq1  GTTTGTAAAGGAGATACTGGGCTTTGTGGCACCTGGTTTCATAATAGCCT  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTTGTAAAGGAGATACTGGGCTTTGTGGCACCTGATTTCATAATAGCCT  700

seq1  TTTCTTAGTCTAATATTAAACTTAATATATTTCTTGAAAGTGGCTCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTCTAATATTAAACTTAATATATTTCTTGAAAGTGGCTCTACT  750

seq1  TCCTTTTCTATGAGTAGTGTTTCACTCCATGGCACTCATTCAAAACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTATGAGTAGTGTTTCACTCCATGGCACTCATTCAAAACATAT  800

seq1  GTAACAGTGAACACTATTCAAACTATTCAAGGTGCTATACGAAGAAAACT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAACAGTGAACACTATTCAAACTATTC-AGGTGCTATACGAAGAAAACT  849

seq1  TCCAAATAATGACAGAACGCTGTCAGGTGGTGCCACTTCAAATATTTGAG  900
      |||||||||||||||||||||||||||| ||||||||   |||| |||||
seq2  TCCAAATAATGACAGAACGCTGTCAGGT-GTGCCACT--CAATA-TTGAG  895

seq1  TTTATATAAATTTTACACACTTTGGGGTTTATCAAACATTTTATTTATTT  950
      ||||||| ||||||||||||||| ||||||||| |||||||   ||||||
seq2  TTTATAT-AATTTTACACACTTT-GGGTTTATC-AACATTT--ATTATTT  940

seq1  TACCTTATAAATAATAT-TGAAATCATTGAATTTAGTTTTTTAATTTTTG  999
      ||||||    ||||||| || ||||||||||||||||||||  | |||||
seq2  TACCTT----ATAATATATGGAATCATTGAATTTAGTTTTT--AATTTTG  984

seq1  ATTTTACTATGCCTCAAAAATTTCTACTTGTCTGTACAAATATCCAAGGT  1049
      | |||| |||||||| ||||||||||||||||||| |||  |||||||| 
seq2  A-TTTAATATGCCTC-AAAATTTCTACTTGTCTGTCCAA--ATCCAAGG-  1029

seq1  GCCTGTTAATTATTTATTTAATAAAGCTAGCATTCCATACTGCAAAAGAT  1099
      ||| ||  | ||||||||||   ||||||||||| | |||||| ||||| 
seq2  GCCGGT--AATATTTATTTATATAAGCTAGCATTTCCTACTGC-AAAGAA  1076

seq1  GATCCATTTTAT  1111
      ||||||||||||
seq2  GATCCATTTTAT  1088