BAC Information

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BAC

Clone NameB6Ng01-046F18
Chromosome14 (Build37)
Map Location 70,116,414 - 70,262,846
singlet/doubletdoublet
Overlap geneR3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2
Downstream geneLOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046F18.bB6Ng01-046F18.g
ACCDH871546DH871547
length5871,077
definitionDH871546|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F18, 5' end.DH871547|Mus musculus domesticus DNA, BAC clone: B6Ng01-046F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,262,178 - 70,262,846)(70,116,414 - 70,117,519)
sequence
ttgacggacattcatgtaggctggaaggttgtgaataggatgagaaacgg
ggaaggggataagtggactctacgaggcctccctgaggaggcgaccttca
ggcaaccatctaaaagggagagagccattcgaagaaggttggagagggtg
ggggtgtcagaaggtagaggtggctctctggtgcaaaggaccccaggaat
actgggaaaccaggtaagttaggtgggcaaagtgcagaggagctgagagt
agagaggatgtgaggaacaggtcagatgccagggcatctatctggcaggc
actggtagcgactgggcacttactcaggaaactgaggggaagcctgacaa
actttgggcaaaggcttggactcatctgacccgcagacttaagggcgccc
tctgatggccgaattgagaacaggctgagccttggggacaaacagtggtg
cttggtggtaactaggtgagaggctaggtccagagagtggtattctctgc
caaagtatggaccctgaggaaaggagatatagccagcttctagacctttc
catggggctctggtagcacagtgggagagacgagaca
gaattcaagccagttctgtgatgcaggccggtaggatttgccgaaggagg
cagaggcaggaggacctggagctcgaggctagcctgggatacacatcttt
tgagccaggtgtggtggcgcacacctttaatcccagcacctgggaggcag
aggcaggcgtatttctgagttccaaggccagcctggtctacagagtgagt
tccaggacagccagggctacacagaaaaatcctgtctcaaaaaccaaaaa
caacaacaaaaaaaccaaaaaaataaaaaaataaaagaattcaaggccag
tctcagctacatgagaccctagctcaaataaacaaacaaatgaaaagaaa
aagaaaaacttgacaccagctaagaatagacaacaacaaaacctggtgtt
tttctcttttaattatttaccagattaaaaaagaaaaaatagtgattgtt
tttcttcacccccagctatttccattgccaaggctgagtgggagagactc
tttgaacaatgattcgtgctcctggcctgaggcaaagttctcccctctgc
tcaagtcacctcaagcaggaagggccagtgcaaagaggtccaggcagcca
ccgtccctgggcagcagactggcagtgtggctgtcatgtctcttctccat
gctgcccccagagcattcagatctacttctgcctgtcctacagttcctgg
agtcacagatgtgctggccggcaggaggcagcacgcagcagatgcggcag
gtcagcgccctgcctcttattgcacatcctggctcagctcctgccctgag
tggtggatactagataagacactttccagatcctaacaggagggagccag
ttgagggtgatgtggtgctcagtggcttgctccagaaaacacatccttta
taatggggcaaatcatgaatcagcttctttcacaccccgggcctaggttt
gtgtttctcatgctcactgaagcagataatctttcctccactcatcagca
gatctacttctagatggaagcgtgggccccaatccataagcacctggaac
tgcatgactgacattcaagcctcgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70262178_70262846
seq2: B6Ng01-046F18.b_96_636 (reverse)

seq1  TGTCTCAACTCATATGACCACTGAGATGTCCTGTGGGCCCTTCATATCAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCATCCAGTCCCCGCCTTACCCCTTACCAAACCTGTTTTATCCTCAGTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TAACCCAGGACTGGGGGAGTGGAGGGGTGTCTCTGTCTCTCCCACTGTGC  150
                                 |||||| ||||||||||||||||
seq2  ---------------------------TGTCTC-GTCTCTCCCACTGTGC  22

seq1  TACCAGAGCCCCATGGAAAGGTCTAGAAGCTGGCTATCTCTCCTTTCCTC  200
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACCAGAGCCCCATGGAAAGGTCTAGAAGCTGGCTATATCTCCTTTCCTC  72

seq1  AGGGTCCCTACTTTGGCAGCGGCTACCACTCTCTGGACCTAGCCTCTCAC  250
      ||||||| ||||||||||| |  |||||||||||||||||||||||||||
seq2  AGGGTCCATACTTTGGCAGAGAATACCACTCTCTGGACCTAGCCTCTCAC  122

seq1  CTAGTTACCACCAAGCACCACTGTTTGTCCCCAAGGCTCAGCCTGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACCACCAAGCACCACTGTTTGTCCCCAAGGCTCAGCCTGTTCTC  172

seq1  AATTCGGCCATCAGAGGGCGCCCTTAAGTCTGCGGGTCAGATGAGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGGCCATCAGAGGGCGCCCTTAAGTCTGCGGGTCAGATGAGTCCAA  222

seq1  GCCTTTGCCCAAAGTTTGTCAGGCTTCCCCTCAGTTTCCTGAGTAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCCCAAAGTTTGTCAGGCTTCCCCTCAGTTTCCTGAGTAAGTGC  272

seq1  CCAGTCGCTACCAGTGCCTGCCAGATAGATGCCCTGGCATCTGACCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGCTACCAGTGCCTGCCAGATAGATGCCCTGGCATCTGACCTGTT  322

seq1  CCTCACATCCTCTCTACTCTCAGCTCCTCTGCACTTTGCCCACCTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATCCTCTCTACTCTCAGCTCCTCTGCACTTTGCCCACCTAACTT  372

seq1  ACCTGGTTTCCCAGTATTCCTGGGGTCCTTTGCACCAGAGAGCCACCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTTTCCCAGTATTCCTGGGGTCCTTTGCACCAGAGAGCCACCTCT  422

seq1  ACCTTCTGACACCCCCACCCTCTCCAACCTTCTTCGAATGGCTCTCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGACACCCCCACCCTCTCCAACCTTCTTCGAATGGCTCTCTCCC  472

seq1  TTTTAGATGGTTGCCTGAAGGTCGCCTCCTCAGGGAGGCCTCGTAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATGGTTGCCTGAAGGTCGCCTCCTCAGGGAGGCCTCGTAGAGTC  522

seq1  CACTTATCCCCTTCCCCGT  669
      |||||||||||||||||||
seq2  CACTTATCCCCTTCCCCGT  541

seq1: chr14_70116414_70117519
seq2: B6Ng01-046F18.g_65_1141

seq1  GAATTCAAGCCAGTTCTGTGATGCAGGCCGGTAGGATTTGCCGAAGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCAGTTCTGTGATGCAGGCCGGTAGGATTTGCCGAAGGAGG  50

seq1  CAGAGGCAGGAGGACCTGGAGCTCGAGGCTAGCCTGGGATACACATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGAGGACCTGGAGCTCGAGGCTAGCCTGGGATACACATCTTT  100

seq1  TGAGCCAGGTGTGGTGGCGCACACCTTTAATCCCAGCACCTGGGAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAGGTGTGGTGGCGCACACCTTTAATCCCAGCACCTGGGAGGCAG  150

seq1  AGGCAGGCGTATTTCTGAGTTCCAAGGCCAGCCTGGTCTACAGAGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCGTATTTCTGAGTTCCAAGGCCAGCCTGGTCTACAGAGTGAGT  200

seq1  TCCAGGACAGCCAGGGCTACACAGAAAAATCCTGTCTCAAAAACCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACACAGAAAAATCCTGTCTCAAAAACCAAAAA  250

seq1  CAACAACAAAAAAACCAAAAAAATAAAAAAATAAAAGAATTCAAGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAAAAAAACCAAAAAAATAAAAAAATAAAAGAATTCAAGGCCAG  300

seq1  TCTCAGCTACATGAGACCCTAGCTCAAATAAACAAACAAATGAAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTACATGAGACCCTAGCTCAAATAAACAAACAAATGAAAAGAAA  350

seq1  AAGAAAAACTTGACACCAGCTAAGAATAGACAACAACAAAACCTGGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACTTGACACCAGCTAAGAATAGACAACAACAAAACCTGGTGTT  400

seq1  TTTCTCTTTTAATTATTTACCAGATTAAAAAAGAAAAAATAGTGATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTAATTATTTACCAGATTAAAAAAGAAAAAATAGTGATTGTT  450

seq1  TTTCTTCACCCCCAGCTATTTCCATTGCCAAGGCTGAGTGGGAGAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACCCCCAGCTATTTCCATTGCCAAGGCTGAGTGGGAGAGACTC  500

seq1  TTTGAACAATGATTCGTGCTCCTGGCCTGAGGCAAAGTTCTCCCCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACAATGATTCGTGCTCCTGGCCTGAGGCAAAGTTCTCCCCTCTGC  550

seq1  TCAAGTCACCTCAAGCAGGAAGGGCCAGTGCAAAGAGGTCCAGGCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCACCTCAAGCAGGAAGGGCCAGTGCAAAGAGGTCCAGGCAGCCA  600

seq1  CCGTCCCTGGGCAGCAGACTGGCAGTGTGGCTGTCATGTCTCTTCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCTGGGCAGCAGACTGGCAGTGTGGCTGTCATGTCTCTTCTCCAT  650

seq1  GCTGCCCCCAGAGCATTCAGATCTACTTCTGCCTGTCCTACAGTTCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCCAGAGCATTCAGATCTACTTCTGCCTGTCCTACAGTTCCTGG  700

seq1  AGTCACAGATGTGCTGGCCGGCAGGAGGCAGCACGCAGCAGATGCGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGATGTGCTGGCCGGCAGGAGGCAGCACGCAGCAGATGCGGCAG  750

seq1  GTCAGCGCCCTGCCTCTTATTGCACATCCTGGCTCAGGCCCCTGCCCTGA  800
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  GTCAGCGCCCTGCCTCTTATTGCACATCCTGGCTCA-GCTCCTGCCCTGA  799

seq1  GTGGTGGATACTAGATAAGACACTTTCCAGATCCTAACAGGGAGGGAGCC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGGTGGATACTAGATAAGACACTTTCCAGATCCTAACA-GGAGGGAGCC  848

seq1  AGTTGAGGGTGATGTGGTGCCCAGTGGCTTGCTCCAGAAAACACATCCTT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTGAGGGTGATGTGGTGCTCAGTGGCTTGCTCCAGAAAACACATCCTT  898

seq1  TATAATGGGGCCAAATCATGAATCCAGCTTCTTTCACACCCCGGGGCCTA  950
      |||||||||| |||||||||||| |||||||||||||||||| |||||||
seq2  TATAATGGGG-CAAATCATGAAT-CAGCTTCTTTCACACCCC-GGGCCTA  945

seq1  GGGTTTGTGTTTCTCATGCTCACCTTGAAAAGGCAGATTAATCCTTTCCC  1000
       ||||||||||||||||||||||  ||||   ||||| |||| |||||| 
seq2  -GGTTTGTGTTTCTCATGCTCAC--TGAA---GCAGA-TAAT-CTTTCCT  987

seq1  CCACTCCATCAGCAGATCTACTTCTAAGATGGAAGCGGTTGTGGCCCCCA  1050
      ||||| ||||||||||||||||||| ||||||||||    |||| |||||
seq2  CCACT-CATCAGCAGATCTACTTCT-AGATGGAAGC----GTGGGCCCCA  1031

seq1  ATCACATAAGCCACCCTGGAAACTGCCATGACCCTGAACCATTCAGAGCC  1100
      ||| |||||||   ||||| ||||| |||||  ||||  |||||| ||||
seq2  ATC-CATAAGC--ACCTGG-AACTG-CATGA--CTGA--CATTCA-AGCC  1071

seq1  TCGAAT  1106
      ||||||
seq2  TCGAAT  1077