BAC Information

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BAC

Clone NameB6Ng01-046H23
Chromosome14 (Build37)
Map Location 113,368,163 - 113,479,219
singlet/doubletdoublet
Overlap genenone
Upstream geneEG223186, LOC100043509
Downstream geneTpm3-rs7, LOC100043510, LOC382947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046H23.bB6Ng01-046H23.g
ACCDH871640DH871641
length1,0731,094
definitionDH871640|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H23, 5' end.DH871641|Mus musculus domesticus DNA, BAC clone: B6Ng01-046H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,368,163 - 113,369,268)(113,478,100 - 113,479,219)
sequence
gaattccacaggcatttacttttcatgaaaaaaactatcctgtattacac
cgaatagtcataaagtgtctttcacttagagaggacactttctaagccat
atatcactgtcacagcagtacagaagattttcattatatctctcatgctc
tgtaacaacaacaacaataacaataataataagtaataattttatcagcg
attgtgaaaaaagcaacaaagggtaaaaaatgcagtaatatgatagtcgt
atttggatgttgataaatgaagagagctgagttttgtcagtgtgtttccc
tgacaatgcacaaagattctagtggctgaccttatagacaagagatgcaa
tcgtctttctttaaggaaaaacacaatatgtctcaatatttgttacctgg
ttaacccatggaaaaatcaatttatagtttcacttgattacactaaataa
attctgttcacataatagtgaaataaatctccacttgttctaaaccacaa
ttgcatttacttacaacatcaccaacttcccaatttttcttaaagattgg
cattttcagatttacatgaatattattattaagaggaagtgtcaggtaaa
atttgaagggtagttatcccattttgtaatgatgtgaccaatgtataatt
aatttgttgaataagaaataaattctgtgctacagcaaagagctatttga
atatgttcactcacccttaatgagagcaaccttgtaacactgtcttttct
ctgggtactgatctattcaaattattcattttcccaaatctcttgagaac
tgaagcttaggtagtcatttaatctgaatcaaattattattaagattttt
ataccagatggatgttgaagttgaagaaaatatgttctatgggtcaatgg
atagtttgtttataatagttctttgggatttcatttagtttcatcactaa
ataaaatagtgtttctaaatgaggtcatctgcagtcttccactctgtgca
tttgtttctcactgtcacatgccatgtgaactaagcttggcagtactggc
tgaagatatctgacaatgattgt
gaattccttacatacatatatgaaactttcaaatatttgaagaatgaaga
aagaaaaactacaaaagaattataagtttgaaattgggattgtttcacgt
acgtgtttgttaaaattacaaatgatttacatttgtgtatacatttattg
aaattacatattgaaatacacagaaattatgtttctgaatgtatttgttg
aaattaaaaataaattcaatgataacaattttcatgtttgaaatgaggat
agatgagctttatatatttaatcttttcattgtagtagatacatgttacc
tatagatgagagaacatgcaatgttctccaaaatgaaagtataatgacaa
tatgttactgaatattttataatgtatatttttacacaatgaatgcttta
taatgaattgacttttcctaaatgacaaatttgcaattggtatttgcaaa
gtacaaactctcagaggttgagtaacccctaagaatgctgaatgagaaca
ttttcaatagaataccactatttttgaagtcagcataaaaaccccactat
gtgctttatacgaggttcactctaagataaaatgaatatttggtttttat
aaaagccttctgaagggaaagagtcaggcagaaagaaatgctgaggaatt
gcaaatctctagattattattgcttctcgcccttttggctaagatcaagt
gtgtagattattatcatcttacatttcctaaactgaaaagtaccattaag
atactgaacacagagaagcataagatgcaagtttattattcatttgctta
tagggtaaaccgcctattgcaaaatccaacagtggattattcattaaatt
ttgaattcattttaaaatgcattaatcttatttgtagatacaaaaaaaaa
aaaacatttctattactgaaaaaatcacttgttttgcacttgagaaacaa
gtgggattttattcccttatgcaaatacattttagatatagatctttgtg
ctcaacaatggagagcagctttggactagagccacttaaaatgaagactc
actactatggtccattatgaattatcaaggcaatgattccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_113368163_113369268
seq2: B6Ng01-046H23.b_41_1113

seq1  GAATTCCACAGGCATTTACTTTTCATGAAAAAAACTATCCTGTATTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCATTTACTTTTCATGAAAAAAACTATCCTGTATTACAC  50

seq1  CGAATAGTCATAAAGTGTCTTTCACTTAGAGAGGACACTTTCTAAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAGTCATAAAGTGTCTTTCACTTAGAGAGGACACTTTCTAAGCCAT  100

seq1  ATATCACTGTCACAGCAGTACAGAAGATTTTCATTATATCTCTCATGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTGTCACAGCAGTACAGAAGATTTTCATTATATCTCTCATGCTC  150

seq1  TGTAACAACAACAACAATAACAATAATAATAAGTAATAATTTTATCAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAACAACAACAATAACAATAATAATAAGTAATAATTTTATCAGCG  200

seq1  ATTGTGAAAAAAGCAACAAAGGGTAAAAAATGCAGTAATATGATAGTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAAAAAGCAACAAAGGGTAAAAAATGCAGTAATATGATAGTCGT  250

seq1  ATTTGGATGTTGATAAATGAAGAGAGCTGAGTTTTGTCAGTGTGTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGTTGATAAATGAAGAGAGCTGAGTTTTGTCAGTGTGTTTCCC  300

seq1  TGACAATGCACAAAGATTCTAGTGGCTGACCTTATAGACAAGAGATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGCACAAAGATTCTAGTGGCTGACCTTATAGACAAGAGATGCAA  350

seq1  TCGTCTTTCTTTAAGGAAAAACACAATATGTCTCAATATTTGTTACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTTCTTTAAGGAAAAACACAATATGTCTCAATATTTGTTACCTGG  400

seq1  TTAACCCATGGAAAAATCAATTTATAGTTTCACTTGATTACACTAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCATGGAAAAATCAATTTATAGTTTCACTTGATTACACTAAATAA  450

seq1  ATTCTGTTCACATAATAGTGAAATAAATCTCCACTTGTTCTAAACCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCACATAATAGTGAAATAAATCTCCACTTGTTCTAAACCACAA  500

seq1  TTGCATTTACTTACAACATCACCAACTTCCCAATTTTTCTTAAAGATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTACTTACAACATCACCAACTTCCCAATTTTTCTTAAAGATTGG  550

seq1  CATTTTCAGATTTACATGAATATTATTATTAAGAGGAAGTGTCAGGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGATTTACATGAATATTATTATTAAGAGGAAGTGTCAGGTAAA  600

seq1  ATTTGAAGGGTAGTTATCCCATTTTGTAATGATGTGACCAATGTATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGGTAGTTATCCCATTTTGTAATGATGTGACCAATGTATAATT  650

seq1  AATTTGTTGAATAAGAAATAAAATTCTGTGCTACAGCAAAGAGCTATTTG  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATTTGTTGAATAAGAAAT-AAATTCTGTGCTACAGCAAAGAGCTATTTG  699

seq1  AATATGTTCACTCACCCTTAATGAGAGCAACCTTGTAACACTGTCTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCACTCACCCTTAATGAGAGCAACCTTGTAACACTGTCTTTTC  749

seq1  TCTGGGTACTGATCTATTCAAATTATTCATTTTCCCAAATCTCTTGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTACTGATCTATTCAAATTATTCATTTTCCCAAATCTCTTGAGAA  799

seq1  CTGAAGCTTAGGTAGTCATTTAATCTGAATCAAATTATTATTAAGATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTTAGGTAGTCATTTAATCTGAATCAAATTATTATTAAGATTTT  849

seq1  TATACCAGATGGATGTTGAAGTTGAAGAAAATATGTTCTTATGGGTCAAT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATACCAGATGGATGTTGAAGTTGAAGAAAATATGTTC-TATGGGTCAAT  898

seq1  GGATAGTTTGTTTAATAATAAGTTCTTTGGGAATTTCATTTAGTTTCCAA  950
      ||||||||||||| ||||| ||||||||||| |||||||||||||||  |
seq2  GGATAGTTTGTTT-ATAAT-AGTTCTTTGGG-ATTTCATTTAGTTTC--A  943

seq1  TCACTAAAATAAAATTAGTGTTTTCTAAAATGAGGTCCATTCCTTGCAGT  1000
      ||||| |||||||| ||||| ||||| ||||||||| |||    ||||||
seq2  TCACT-AAATAAAA-TAGTG-TTTCT-AAATGAGGT-CAT---CTGCAGT  985

seq1  TCTTTCCACTCTGTTGCATTTGTTTCCTCAACCTGTTCACATGCCCATGT  1050
         |||||||||| ||||||||||| ||||  ||| ||||||| ||||||
seq2  --CTTCCACTCTG-TGCATTTGTTT-CTCA--CTG-TCACATG-CCATGT  1027

seq1  GAAACTTAAAGCTTTGGCAGTTAACTGGCTGAAGATAATACTGACATAAT  1100
      | ||||  |||| ||||||||  ||||||||||||||   |||||  |||
seq2  G-AACT--AAGC-TTGGCAGT--ACTGGCTGAAGATA--TCTGAC--AAT  1067

seq1  GATTGT  1106
      ||||||
seq2  GATTGT  1073

seq1: chr14_113478100_113479219
seq2: B6Ng01-046H23.g_67_1160 (reverse)

seq1  GAATGGGAATCAAATGTGCTTTGATAATATCATGAGTGGACCACTAGTAG  50
      |||| |||||||    ||| |||||||| |||| | ||||||| ||||||
seq2  GAAT-GGAATCA---TTGCCTTGATAAT-TCAT-AATGGACCA-TAGTAG  43

seq1  TGAGTTCCTTCATTTTTAAGTGGCTCTAGTCCAAAGCTGGCTCTCCATTT  100
      |||||  ||||| ||||||||||||||||||||||||| |||||||| ||
seq2  TGAGT--CTTCA-TTTTAAGTGGCTCTAGTCCAAAGCT-GCTCTCCA-TT  88

seq1  GTTTGGAGCACAAAGATCTATATCCTAAAATGTATTTTGCATTAAGGGAA  150
      |||  |||||||||||||||||| |||||||||| |||||| ||||||||
seq2  GTT--GAGCACAAAGATCTATAT-CTAAAATGTA-TTTGCA-TAAGGGAA  133

seq1  TAAAATCCCACTTGTTTCTCAAGTGCAAAACCAAGTGATTTTTTTCCAGT  200
      |||||||||||||||||||||||||||||| |||||||||||||  ||||
seq2  TAAAATCCCACTTGTTTCTCAAGTGCAAAA-CAAGTGATTTTTT--CAGT  180

seq1  AATAGAAATTGTTTTTTTTTTTTTTGTATTCTTACAAAATAAGATTTAAT  250
      |||||||||   |||||||||||||||||   ||| |||||||| |||||
seq2  AATAGAAAT--GTTTTTTTTTTTTTGTAT--CTAC-AAATAAGA-TTAAT  224

seq1  GCATTTTAAAATGAATTCAAAATTTAATGAATAATCCACTGTTGGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAAAATGAATTCAAAATTTAATGAATAATCCACTGTTGGATTTT  274

seq1  GCAATAGGCGGTTTACCCTATAAGCAAATGAATAATAAACTTGCATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGGCGGTTTACCCTATAAGCAAATGAATAATAAACTTGCATCTTA  324

seq1  TGCTTCTCTGTGTTCAGTATCTTAATGGTACTTTTCAGTTTAGGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTGTGTTCAGTATCTTAATGGTACTTTTCAGTTTAGGAAATGT  374

seq1  AAGATGATAATAATCTACACACTTGATCTTAGCCAAAAGGGCGAGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATAATAATCTACACACTTGATCTTAGCCAAAAGGGCGAGAAGCA  424

seq1  ATAATAATCTAGAGATTTGCAATTCCTCAGCATTTCTTTCTGCCTGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATCTAGAGATTTGCAATTCCTCAGCATTTCTTTCTGCCTGACTC  474

seq1  TTTCCCTTCAGAAGGCTTTTATAAAAACCAAATATTCATTTTATCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCAGAAGGCTTTTATAAAAACCAAATATTCATTTTATCTTAGA  524

seq1  GTGAACCTCGTATAAAGCACATAGTGGGGTTTTTATGCTGACTTCAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCTCGTATAAAGCACATAGTGGGGTTTTTATGCTGACTTCAAAAA  574

seq1  TAGTGGTATTCTATTGAAAATGTTCTCATTCAGCATTCTTAGGGGTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTATTCTATTGAAAATGTTCTCATTCAGCATTCTTAGGGGTTACT  624

seq1  CAACCTCTGAGAGTTTGTACTTTGCAAATACCAATTGCAAATTTGTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTGAGAGTTTGTACTTTGCAAATACCAATTGCAAATTTGTCATT  674

seq1  TAGGAAAAGTCAATTCATTATAAAGCATTCATTGTGTAAAAATATACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAAGTCAATTCATTATAAAGCATTCATTGTGTAAAAATATACATT  724

seq1  ATAAAATATTCAGTAACATATTGTCATTATACTTTCATTTTGGAGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATTCAGTAACATATTGTCATTATACTTTCATTTTGGAGAACAT  774

seq1  TGCATGTTCTCTCATCTATAGGTAACATGTATCTACTACAATGAAAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCTCTCATCTATAGGTAACATGTATCTACTACAATGAAAAGAT  824

seq1  TAAATATATAAAGCTCATCTATCCTCATTTCAAACATGAAAATTGTTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATAAAGCTCATCTATCCTCATTTCAAACATGAAAATTGTTATC  874

seq1  ATTGAATTTATTTTTAATTTCAACAAATACATTCAGAAACATAATTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTATTTTTAATTTCAACAAATACATTCAGAAACATAATTTCTG  924

seq1  TGTATTTCAATATGTAATTTCAATAAATGTATACACAAATGTAAATCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCAATATGTAATTTCAATAAATGTATACACAAATGTAAATCATT  974

seq1  TGTAATTTTAACAAACACGTACGTGAAACAATCCCAATTTCAAACTTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTAACAAACACGTACGTGAAACAATCCCAATTTCAAACTTATA  1024

seq1  ATTCTTTTGTAGTTTTTCTTTCTTCATTCTTCAAATATTTGAAAGTTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGTAGTTTTTCTTTCTTCATTCTTCAAATATTTGAAAGTTTCA  1074

seq1  TATATGTATGTAAGGAATTC  1120
      ||||||||||||||||||||
seq2  TATATGTATGTAAGGAATTC  1094