BAC Information

Click to search

BAC

Clone NameB6Ng01-047J05
Chromosome14 (Build37)
Map Location 109,430,045 - 109,562,284
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J05.bB6Ng01-047J05.g
ACCDH872400DH872401
length1,0091,133
definitionDH872400|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J05, 5' end.DH872401|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,430,045 - 109,431,046)(109,561,136 - 109,562,284)
sequence
gaattcaattgaaagtctcaccacaggaacatgagtataaactggccaaa
ttgctagatttcttaagtgtctcatttttagatcatttctttctaatgaa
gaaataaaaatggttattagttattgtgtgtctctatgttgcagtgacat
tacaatcttgctatttttcatatttcactatttaactttgttaaacctct
taggtgttctgtatcttcgcttttagcttttactttagttttgagtattt
catgtgtgtataaaaggaaatatcatatgtacttcccattttatccttta
ggtccctcaatattcccttaaattcttgttctcagagtcatttttttttt
aaattttgtaccccactaagcctggttattgctgttcatatgtgaattat
gctagggctatctttcagagcatgggagtcttaacattggtcaacctcct
ccgagaagaagctcaaaaatgaatgatcttccctgcccaagcatctatta
ggttggcttgatcttgtgaaagtctcatgtgagtgttttagttagggttt
actgcactgaacacaccatgaccaaggtgacttttataaggacaacactt
aattggaactggctgtcaagttcagaggttcagtccattatcatcaagga
agaagcatggcaacttacagacagacatggtactggaggaactgagaact
ctacatcttcatctgaaggccactaagagaagactagcttccagtcagcc
agcagaactgtcttaaagcccactcccactgcaatacactttcctctaac
tatgttacacctactccaacgaagccacacctcctaatagtgcactccct
aggccaaatataattcaatccaccatagtgagtcagaacattaatgcatt
atgcatttttattgtgatagccatgccatgtctagaatacagcttttcat
tagctctcctacccatcctccagcgtaatctttttttttttttcccttgt
ggtacatga
gaattcactgtcagtgtgatctgattcttgtcctgagatacataaaagga
caaaaaaggagaacagaattggagctgagattccatctcgatagccaggg
atgtagtgggcatccaccctagaacttgaaagatacctttcattctctct
ttgccttttatcagtaattttctcagtaacaaaaagaaaaaactatcata
gttaaatagtcatttaaatattaaccacataattataaccttttaaactt
aatttttgatagttatagatttatgtaaaatgggctgagagaataatata
aataactgtgtataatgtagtgttactttatacagttttttctaagagtg
acatattgtaaatatatagatattgatagatataaatatagatatagatt
agatatagagataaatatagagatagtgatagagataaataatgtagaga
tagagatacataatacagacatagataaggataattacaggtaggtatag
attatgaagtatagattagacagatatacatatcgattaagtataggtat
aaattaaatatagatatatagaaatgatagagatagatatatgcaatatt
tgccacaatgacttggctacaatccacatattttatttagatatgctcag
gggacgtaagttttcatgtgtgtgtgtgcatatttgtgtgagtatatgtg
cagtggcggggcgcgaatgttcacatgcattcatgtgtgtatttataaaa
ttttacacatctgtttgattaatgtgaaaatttcaaagcatctcgagtca
ttagtagtccccttttgtcctgccacatttaaaaacattattctcctccg
aagcactcatgttcagcagtccagaaaacccttttgacctaaatgagttg
atacttaaattaaagtgattctggatgactggaggtaagaacttggtggt
agagatggaagaaccccagcatgctatgaagtaagtggagcatagatgga
aataagtactacagcacaattcatcaaaataaccattgtggaaataagca
atacattcctgcctagggtagactgcatccaataaactggttaaaataaa
gtgagcaaccttttagatgaggaaatgacctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109430045_109431046
seq2: B6Ng01-047J05.b_43_1041

seq1  GAATTCAATTGAAAGTCTCACCACAGGAACATGAGTATAAACTGGCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGAAAGTCTCACCACAGGAACATGAGTATAAACTGGCCAAA  50

seq1  TTGCTAGATTTCTTAAGTGTCTCATTTTTAGATCATTTCTTTCTAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGATTTCTTAAGTGTCTCATTTTTAGATCATTTCTTTCTAATGAA  100

seq1  GAAATAAAAATGGTTATTAGTTATTGTGTGTCTCTATGTTGCAGTGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAATGGTTATTAGTTATTGTGTGTCTCTATGTTGCAGTGACAT  150

seq1  TACAATCTTGCTATTTTTCATATTTCACTATTTAACTTTGTTAAACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTTGCTATTTTTCATATTTCACTATTTAACTTTGTTAAACCTCT  200

seq1  TAGGTGTTCTGTATCTTCGCTTTTAGCTTTTACTTTAGTTTTGAGTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTCTGTATCTTCGCTTTTAGCTTTTACTTTAGTTTTGAGTATTT  250

seq1  CATGTGTGTATAAAAGGAAATATCATATGTACTTCCCATTTTATCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTATAAAAGGAAATATCATATGTACTTCCCATTTTATCCTTTA  300

seq1  GGTCCCTCAATATTCCCTTAAATTCTTGTTCTCAGAGTCATTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCAATATTCCCTTAAATTCTTGTTCTCAGAGTCATTTTTTTTTT  350

seq1  AAATTTTGTACCCCACTAAGCCTGGTTATTGCTGTTCATATGTGAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTACCCCACTAAGCCTGGTTATTGCTGTTCATATGTGAATTAT  400

seq1  GCTAGGGCTATCTTTCAGAGCATGGGAGTCTTAACATTGGTCAACCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGCTATCTTTCAGAGCATGGGAGTCTTAACATTGGTCAACCTCCT  450

seq1  CCGAGAAGAAGCTCAAAAATGAATGATCTTCCCTGCCCAAGCATCTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAAGAAGCTCAAAAATGAATGATCTTCCCTGCCCAAGCATCTATTA  500

seq1  GGTTGGCTTGATCTTGTGAAAGTCTCATGTGAGTGTTTTAGTTAGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTTGATCTTGTGAAAGTCTCATGTGAGTGTTTTAGTTAGGGTTT  550

seq1  ACTGCACTGAACACACCATGACCAAGGTGACTTTTATAAGGACAACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTGAACACACCATGACCAAGGTGACTTTTATAAGGACAACACTT  600

seq1  AATTGGAACTGGCTGTCAAGTTCAGAGGTTCAGTCCATTATCATCAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACTGGCTGTCAAGTTCAGAGGTTCAGTCCATTATCATCAAGGA  650

seq1  AGAAGCATGGCAACTTACAGACAGACATGGTACTGGAGGAACTGAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATGGCAACTTACAGACAGACATGGTACTGGAGGAACTGAGAACT  700

seq1  CTACATCTTCATCTGAAGGCCACTAAGAGAAGACTAGCTTCCAGTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTTCATCTGAAGGCCACTAAGAGAAGACTAGCTTCCAGTCAGCC  750

seq1  AGCAGAACTGTCTTAAAGCCCACTCCCACTGCAATACAC-TTCCTCTAAC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAGAACTGTCTTAAAGCCCACTCCCACTGCAATACACTTTCCTCTAAC  800

seq1  TATGTTACACCTACTCCAACGAAGCCACACCTCCTAATAGTGCCACTCCC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATGTTACACCTACTCCAACGAAGCCACACCTCCTAATAGTG-CACTCCC  849

seq1  TAGGCCAAATAT-ATTCAATCCACCATAGTGAGTCAGAACATTAATGCA-  897
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TAGGCCAAATATAATTCAATCCACCATAGTGAGTCAGAACATTAATGCAT  899

seq1  TATGCATTTTTTATTGTGATAGCCATGCCATGTCTAGAATACAGCTTTTC  947
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCA-TTTTTATTGTGATAGCCATGCCATGTCTAGAATACAGCTTTTC  948

seq1  ATAAGCTCTCCTACCCATCCTCCAGCGGTTATATCTTTTTTTTTTTTTTC  997
      || ||||||||||||||||||||||||  || ||| ||||||||||||||
seq2  ATTAGCTCTCCTACCCATCCTCCAGCG--TA-ATC-TTTTTTTTTTTTTC  994

seq1  CCTTG  1002
      |||||
seq2  CCTTG  999

seq1: chr14_109561136_109562284
seq2: B6Ng01-047J05.g_68_1200 (reverse)

seq1  ATAGGTCATTTTACTACTACTAAAAGTTTGCTCACTTTTATTTTAA-CAG  49
      |||||||||||  |  |  ||||||| |||||||| |||||||||| |||
seq2  ATAGGTCATTT--CCTCATCTAAAAGGTTGCTCAC-TTTATTTTAACCAG  47

seq1  TTTTTATTTGACTGCAGTCTACCCATAAGGCAAAGAATGTATTGCCTAAT  99
        |||||| || ||||||||||||   |||| | |||||||||| || ||
seq2  --TTTATTGGA-TGCAGTCTACCC--TAGGC-AGGAATGTATTG-CTTAT  90

seq1  TTCCAACAATGGTTATTTTGATGATATTGTGCCTTGTAGTACTTTATTTT  149
      |||| ||||||||||||||||||| |||||||  ||||||||||   |||
seq2  TTCC-ACAATGGTTATTTTGATGA-ATTGTGC--TGTAGTACTT--ATTT  134

seq1  CAATCTTATGCTCCACTTACTTCACTAGCATGCTGGGTGTCTTCCATCTC  199
      | ||| |||||||||||||||||| ||||||||||||  |||||||||||
seq2  CCATC-TATGCTCCACTTACTTCA-TAGCATGCTGGGGTTCTTCCATCTC  182

seq1  TACCACCAAGTTCTTACCTCCAGTCATCCAGAATCACTTTTAAATTAAGT  249
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TACCACCAAGTTCTTACCTCCAGTCATCCAGAATCAC-TTTAATTTAAGT  231

seq1  ATCAACTCATTTAGGTC-AAAGGGTTTTCTGGACTGCTGAACATGAGTGC  298
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCAACTCATTTAGGTCAAAAGGGTTTTCTGGACTGCTGAACATGAGTGC  281

seq1  TTCGGAGGAGAATAATGTTTTTAAATGTGGCAGGACAAAAGGGGACTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGAGAATAATGTTTTTAAATGTGGCAGGACAAAAGGGGACTACT  331

seq1  AATGACTCGAGATGCTTTGAAATTTTCACATTAATCAAACAGATGTGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCGAGATGCTTTGAAATTTTCACATTAATCAAACAGATGTGTAA  381

seq1  AATTTTATAAATACACACATGAATGCATGTGAACATTCGCGCCCCGCCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATAAATACACACATGAATGCATGTGAACATTCGCGCCCCGCCAC  431

seq1  TGCACATATACTCACACAAATATGCACACACACACATGAAAACTTACGT-  497
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCACATATACTCACACAAATATGCACACACACACATGAAAACTTACGTC  481

seq1  CCCTGAGCATATCTAAATAAAATATGTGGATTGTAGCCAAGTCATTGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCATATCTAAATAAAATATGTGGATTGTAGCCAAGTCATTGTGG  531

seq1  CAAATATTGCATATATCTATCTCTATCATTTCTATATATCTATATTTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGCATATATCTATCTCTATCATTTCTATATATCTATATTTAAT  581

seq1  TTATACCTATACTTAATCGATATGTATATCTGTCTAATCTATACTTCATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTATACTTAATCGATATGTATATCTGTCTAATCTATACTTCATA  631

seq1  ATCTATACCTACCTGTAATTATCCTTATCTATGTCTGTATTATGTATCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACCTACCTGTAATTATCCTTATCTATGTCTGTATTATGTATCTC  681

seq1  TATCTCTACATTATTTATCTCTATCACTATCTCTATATTTATCTCTATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTACATTATTTATCTCTATCACTATCTCTATATTTATCTCTATAT  731

seq1  CTAATCTATATCTATATTTATATCTATCAATATCTATATATTTACAATAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTATATCTATATTTATATCTATCAATATCTATATATTTACAATAT  781

seq1  GTCACTCTTAGAAAAAACTGTATAAAGTAACACTACATTATACACAGTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTTAGAAAAAACTGTATAAAGTAACACTACATTATACACAGTTA  831

seq1  TTTATATTATTCTCTCAGCCCATTTTACATAAATCTATAACTATCAAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATTCTCTCAGCCCATTTTACATAAATCTATAACTATCAAAAA  881

seq1  TTAAGTTTAAAAGGTTATAATTATGTGGTTAATATTTAAATGACTATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTAAAAGGTTATAATTATGTGGTTAATATTTAAATGACTATTTA  931

seq1  ACTATGATAGTTTTTTCTTTTTGTTACTGAGAAAATTACTGATAAAAGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATAGTTTTTTCTTTTTGTTACTGAGAAAATTACTGATAAAAGGC  981

seq1  AAAGAGAGAATGAAAGGTATCTTTCAAGTTCTAGGGTGGATGCCCACTAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAATGAAAGGTATCTTTCAAGTTCTAGGGTGGATGCCCACTAC  1031

seq1  ATCCCTGGCTATCGAGATGGAATCTCAGCTCCAATTCTGTTCTCCTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGCTATCGAGATGGAATCTCAGCTCCAATTCTGTTCTCCTTTTT  1081

seq1  TGTCCTTTTATGTATCTCAGGACAAGAATCAGATCACACTGACAGTGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTATGTATCTCAGGACAAGAATCAGATCACACTGACAGTGAAT  1131

seq1  TC  1149
      ||
seq2  TC  1133