BAC Information

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BAC

Clone NameB6Ng01-049M04
Chromosome14 (Build37)
Map Location 55,354,707 - 55,524,806
singlet/doubletdoublet
Overlap geneSlc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1
Upstream geneLOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe
Downstream geneSlc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M04.bB6Ng01-049M04.g
ACCDH873930DH873931
length1,086588
definitionDH873930|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M04, 5' end.DH873931|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,354,707 - 55,355,821)(55,524,197 - 55,524,806)
sequence
gaattctcctgtggacacaacaggtaggaggcttctcagagagacgagcc
caggcccagtagcccaatggccaccccatgcattgtctggacatcctctg
cggtgatatgctagctccttgtctgtgaaccttctgtgtgagagaaggcc
agtaagatgaaatccaggaccaggacctcccggaacctggaacctcagaa
ccaggaggctaaacaggggctcaggctcaaagcacagctcagaacatcct
tttcaaaagggcaacaacattgtttagaaggaaagttcatgtaaatggca
aagctagtgtcaatggcagtctctggactacttttcttgatatattattt
gtgttttgtgaagaaagcatcaagagcaaccaacattcaagttctcacag
acctagagcattctgtcagttcaagtctattttgtttactttgcccatag
cccatcacttcctaagggatatttggttttcttctggatcctttggtaaa
aaaagatgctgggggttgggctggagagatgctggagttcagagcacttg
cggtacctgcagagcatccagggtctctattctcagcacccatatggtgg
gtggctcacaaccaggtgatccagtgttctctactggctttatgggcact
aggcatgcacatggctcacatgtatgtgcaggcaaagcacttatacatat
aaaatataaaatatatatgatacatacgcaatagaataaacgtctttttg
tttttgttttgttttgttttgtttctgggatgaagatgtagctttgtatt
agagggcctgtgcaaagcccaggtttgagtatatacacccgcacacatat
accctcagctgctggagtaaataaggcaggacagacagagtaattagctc
tgctatttagacaatggtaattagacaggaattagagttgtgtgatcaga
gagagactgaagctgagtgaggagattcatatctttggagagatagcaca
atgtttcttagctaaatctgaaacaaattgtcgtcatcatctccctactc
caaggttaatctgctgactaaatgatcaagggaggg
gaattccagtaggattccttcccggaagcaccgtgcaggtcctctctagc
aagcacatgattggctagcttgagtagcacgctgttccactcctaatacc
aagggatatgaaaaaggaaagaaagctgcacagttaggacaggactggat
gtttgaaaataagcaatggctgtctaccatagtattaactcattaagaag
actctgctcaagggctttgattacttgtctgaggttacaacgctaaggag
gcccagttagagcacagagtcggagctctgctaggtacagtggcacatgc
ctttagtcccagccgtgtgggggcagaagcaggaggatctgtagttggag
gctagtctggtctacatagtgagttccaggccagccagagctactgagtg
agaccctgccaaaacaaacaatcaaaccaccaaaacaaaatggaaaagga
agaaaaggataaaggtctcctccccttacctgggattcccttgcagtgag
aaaggatctcttggccccccgggaaaaacatagaaactgcacccggtggt
gggggtttctagctccctaaccgaggatgtctctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55354707_55355821
seq2: B6Ng01-049M04.b_44_1129

seq1  GAATTCTCCTGTGGACACAACAGGTAGGAGGCTTCTCAGAGAGACGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTGGACACAACAGGTAGGAGGCTTCTCAGAGAGACGAGCC  50

seq1  CAGGCCCAGTAGCCCAATGGCCACCCCATGCATTGTCTGGACATCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAGTAGCCCAATGGCCACCCCATGCATTGTCTGGACATCCTCTG  100

seq1  CGGTGATATGCTAGCTCCTTGTCTGTGAACCTTCTGTGTGAGAGAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGATATGCTAGCTCCTTGTCTGTGAACCTTCTGTGTGAGAGAAGGCC  150

seq1  AGTAAGATGAAATCCAGGACCAGGACCTCCCGGAACCTGGAACCTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATGAAATCCAGGACCAGGACCTCCCGGAACCTGGAACCTCAGAA  200

seq1  CCAGGAGGCTAAACAGGGGCTCAGGCTCAAAGCACAGCTCAGAACATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGCTAAACAGGGGCTCAGGCTCAAAGCACAGCTCAGAACATCCT  250

seq1  TTTCAAAAGGGCAACAACATTGTTTAGAAGGAAAGTTCATGTAAATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGGGCAACAACATTGTTTAGAAGGAAAGTTCATGTAAATGGCA  300

seq1  AAGCTAGTGTCAATGGCAGTCTCTGGACTACTTTTCTTGATATATTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTGTCAATGGCAGTCTCTGGACTACTTTTCTTGATATATTATTT  350

seq1  GTGTTTTGTGAAGAAAGCATCAAGAGCAACCAACATTCAAGTTCTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTGAAGAAAGCATCAAGAGCAACCAACATTCAAGTTCTCACAG  400

seq1  ACCTAGAGCATTCTGTCAGTTCAAGTCTATTTTGTTTACTTTGCCCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGCATTCTGTCAGTTCAAGTCTATTTTGTTTACTTTGCCCATAG  450

seq1  CCCATCACTTCCTAAGGGATATTTGGTTTTCTTCTGGATCCTTTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACTTCCTAAGGGATATTTGGTTTTCTTCTGGATCCTTTGGTAAA  500

seq1  AAAAGATGCTGGGGGTTGGGCTGGAGAGATGCTGGAGTTCAGAGCACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGCTGGGGGTTGGGCTGGAGAGATGCTGGAGTTCAGAGCACTTG  550

seq1  CGGTACCTGCAGAGCATCCAGGGTCTCTATTCTCAGCACCCATATGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACCTGCAGAGCATCCAGGGTCTCTATTCTCAGCACCCATATGGTGG  600

seq1  GTGGCTCACAACCAGGTGATCCAGTGTTCTCTACTGGCTTTATGGGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCAGGTGATCCAGTGTTCTCTACTGGCTTTATGGGCACT  650

seq1  AGGCATGCACATGGCTCACATGTATGTGCAGGCAAAGCACTTATACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCACATGGCTCACATGTATGTGCAGGCAAAGCACTTATACATAT  700

seq1  AAAATATAAAATATATATGATACATACGCAATAGAATAAACGTCTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAATATATATGATACATACGCAATAGAATAAACGTCTTTTTG  750

seq1  TTTTTGTTTTGTTTTGTTTTGTTTCTGGGATGAAGATGTAGCTTTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTGTTTTGTTTCTGGGATGAAGATGTAGCTTTGTATT  800

seq1  AGAGGGCCTGTGCAAAGCCCAGGTTTGAGTATATACACCCGCACCACATA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGGGCCTGTGCAAAGCCCAGGTTTGAGTATATACACCCGCA-CACATA  849

seq1  TACCCTCAGCTGCT-GAGTAAATAAGGCCAGGACAAGACAGAGTAATTAG  899
      |||||||||||||| |||||||||||| |||||| |||||||||||||||
seq2  TACCCTCAGCTGCTGGAGTAAATAAGG-CAGGAC-AGACAGAGTAATTAG  897

seq1  CTCTGCTATTTAGACAATGGTAATTAGGACAGGAAATAAGGAGGTTTGTG  949
      |||||||||||||||||||||||||| |||||||| ||  |||  |||||
seq2  CTCTGCTATTTAGACAATGGTAATTA-GACAGGAATTA--GAG--TTGTG  942

seq1  TGATCAGGAGAGAGAACTGAGAGCTGAGGTGAGGAAGGATTCATTATCTT  999
      |||||| ||||||| ||||| |||||| |||||||  |||||| ||||||
seq2  TGATCA-GAGAGAG-ACTGA-AGCTGA-GTGAGGA--GATTCA-TATCTT  985

seq1  TGAGAAGATAGCACAATGTTTCCTAAGCCTAAATTCCTGGAAACAATATG  1049
      ||   ||||||||||||||||| ||   ||||||  || |||||||  ||
seq2  TGGAGAGATAGCACAATGTTTCTTA--GCTAAAT--CT-GAAACAAATTG  1030

seq1  TCCGTCCATCCATCCCCCCTACTCCCCAGGGTTTAATTCTGCTGACTAAA  1099
      | ||| ||| ||| | |||||||  ||| ||||  | |||||||||| ||
seq2  T-CGT-CAT-CAT-CTCCCTACT--CCAAGGTT--AATCTGCTGACT-AA  1071

seq1  ATGATCAAGGGGAGGG  1115
      |||||||| |||||||
seq2  ATGATCAA-GGGAGGG  1086

seq1: chr14_55524197_55524806
seq2: B6Ng01-049M04.g_68_655 (reverse)

seq1  GCACAGAGGACCATACCTCGGGTTAGTGTATGCTAAGAAAGCACCCCACC  50
      ||||||||   ||| |||| |||||| |   ||| |||||   |||||||
seq2  GCACAGAG--ACAT-CCTC-GGTTAGGG--AGCT-AGAAA--CCCCCACC  41

seq1  AACCGGGCTGCAGTCTCCTACTGCTTCTTCCCAGGGGTGCCAAGAGACTC  100
       |||||| |||||| | ||| || || ||||| |||| ||||||||| ||
seq2  -ACCGGG-TGCAGT-TTCTA-TG-TTTTTCCC-GGGGGGCCAAGAGA-TC  84

seq1  CTTTTCTCACTGCCAAGGGAATCCCCAGGTTAAGGGGAGGAGACCTTTAT  150
      | |||||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  C-TTTCTCACTG-CAAGGGAAT-CCCAGG-TAAGGGGAGGAGACCTTTAT  130

seq1  CCTTTTCTTCCTTTTCCATTTTGTTTTTGGTGGTTTTGATTGTTTGTTTT  200
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CCTTTTCTTCCTTTTCCATTTTG-TTTTGGTGG-TTTGATTGTTTGTTTT  178

seq1  GGCAGGGTCTCACTCAGTAGCTCTGGCTGGCCTGGAACTCACTATGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCTCACTCAGTAGCTCTGGCTGGCCTGGAACTCACTATGTAGA  228

seq1  CCAGACTAGCCTCCAACTACAGATCCTCCTGCTTCTGCCCCCACACGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTAGCCTCCAACTACAGATCCTCCTGCTTCTGCCCCCACACGGCT  278

seq1  GGGACTAAAGGCATGTGCCACTGTACCTAGCAGAGCTCCGACTCTGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAAAGGCATGTGCCACTGTACCTAGCAGAGCTCCGACTCTGTGCT  328

seq1  CTAACTGGGCCTCCTTAGCGTTGTAACCTCAGACAAGTAATCAAAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGGCCTCCTTAGCGTTGTAACCTCAGACAAGTAATCAAAGCCCT  378

seq1  TGAGCAGAGTCTTCTTAATGAGTTAATACTATGGTAGACAGCCATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAGTCTTCTTAATGAGTTAATACTATGGTAGACAGCCATTGCTT  428

seq1  ATTTTCAAACATCCAGTCCTGTCCTAACTGTGCAGCTTTCTTTCCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAACATCCAGTCCTGTCCTAACTGTGCAGCTTTCTTTCCTTTTT  478

seq1  CATATCCCTTGGTATTAGGAGTGGAACAGCGTGCTACTCAAGCTAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCTTGGTATTAGGAGTGGAACAGCGTGCTACTCAAGCTAGCCAA  528

seq1  TCATGTGCTTGCTAGAGAGGACCTGCACGGTGCTTCCGGGAAGGAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTTGCTAGAGAGGACCTGCACGGTGCTTCCGGGAAGGAATCCT  578

seq1  ACTGGAATTC  610
      ||||||||||
seq2  ACTGGAATTC  588