BAC Information

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BAC

Clone NameB6Ng01-050E10
Chromosome1 (Build37)14 (Build37)
Map Location 61,720,676 - 61,721,252101,056,704 - 101,057,758
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E10.bB6Ng01-050E10.g
ACCDH874272DH874273
length9421,031
definitionDH874272|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E10, 5' end.DH874273|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,676 - 61,721,252)(101,056,704 - 101,057,758)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gttctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaaagggtttatct
atcttgttgattttctcaagaaccaaatcctcgtttgggttaattctttg
atagttcttcttgtttccacttggttgatttcacccctgagtttgatatt
cctgccgtctactcctcttgggtgaatttgcttccttttttctagggctt
tagatgtgtgtcaagctgctagtatgtgctgtctcccgtttc
gaattcaaactgggcagggtcttggaggcatccgctgatgtagggggcga
tggatgggtactatttattggcttgctccccaagtcattctcagccttct
ttcttatagaacccagaaccaccagcccatgggtgaccccacccacaatg
gtgtaggtcctcctccattaattactaattaagaaaatcctacagctggt
tcttgtggaggcatttttctcaattcaggtaaccctaggttgtgtcaagt
tgacataaaactctccagcatagtgttccaaatgctctgtcctctaccgt
ctcgacctttgaaagcaagattattaggattttggttttccactaagagt
agagtagctgcatgcagttttagtctgccttctctaattgctaagaatgt
tgaatatcgttatgtatgcccatgctaccttgatatcatcctgggaaaat
gcttatttgagtatatggtttaatttttactaattaattgctttcttcct
ttggatgtgttggagttcttaaaaaataaattttatcctgatagtggtgc
caggtatcctaagaccagcacaagctcagattacacaaattcttaacatg
gaggacctgggaagctattggtgattgacagctgctaggacaggagagtg
aattttcactataggatgaatgaggttaggtagagcacattccagtagag
gaccgcacacccaagagaacattagcagtacaaaatagacttaataggtt
caaaaattaagtactcaaagtagagtaggtgttgaggaaggacacctctt
ggctatatttagggggaagtgatacataataaccacatatatgaaattct
catggctaataagatactaaatatttaaacacgatcttttgtgagattac
taatatctctcacacatacactaaatatttatcttctttctgtagtgtct
tcacagacaagcatttacatttcatatgcatcataagaactctgcaactt
attcatggccataaaattgtgttatgctacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720676_61721252
seq2: B6Ng01-050E10.b_45_621 (reverse)

seq1  AAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGA  50

seq1  CCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA  100

seq1  GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTC  150
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTCCCAACCAAAAAAAGCCCAGAACCAGATGGGTTTAGTGCAGAGTTC  150

seq1  TATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCA  200

seq1  CAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  250

seq1  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  300

seq1  AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  350

seq1  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  400

seq1  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  450

seq1  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  500

seq1  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  550

seq1  TAAAAGTTTTGGAAAGATCAGGAATTC  577
      |||||||||||||||||||||||||||
seq2  TAAAAGTTTTGGAAAGATCAGGAATTC  577

seq1: chr14_101056704_101057758
seq2: B6Ng01-050E10.g_67_1097

seq1  GAATTCAAACTGGGCAGGGTCTTGGAGGCATCCGCTGATGTAGGGGGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGGGCAGGGTCTTGGAGGCATCCGCTGATGTAGGGGGCGA  50

seq1  TGGATGGGTACTATTTATTGGCTTGCTCCCCAAGTCATTCTCAGCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTACTATTTATTGGCTTGCTCCCCAAGTCATTCTCAGCCTTCT  100

seq1  TTCTTATAGAACCCAGAACCACCAGCCCATGGGTGACCCCACCCACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGAACCCAGAACCACCAGCCCATGGGTGACCCCACCCACAATG  150

seq1  GTGTAGGTCCTCCTCCATTAATTACTAATTAAGAAAATCCTACAGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGTCCTCCTCCATTAATTACTAATTAAGAAAATCCTACAGCTGGT  200

seq1  TCTTGTGGAGGCATTTTTCTCAATTCAGGTAACCCTAGGTTGTGTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGAGGCATTTTTCTCAATTCAGGTAACCCTAGGTTGTGTCAAGT  250

seq1  TGACATAAAACTCTCCAGCATAGTGTTCCAAATGCTCTGTCCTCTACCGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAAACTCTCCAGCATAGTGTTCCAAATGCTCTGTCCTCTACCGT  300

seq1  CTCGACCTTTGAAAGCAAGATTATTAGGATTTTGGTTTTCCACTAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACCTTTGAAAGCAAGATTATTAGGATTTTGGTTTTCCACTAAGAGT  350

seq1  AGAGTAGCTGCATGCAGTTTTAGTCTGCCTTCTCTAATTGCTAAGAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCTGCATGCAGTTTTAGTCTGCCTTCTCTAATTGCTAAGAATGT  400

seq1  TGAATATCGTTATGTATGCCCATGCTACCTTGATATCATCCTGGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCGTTATGTATGCCCATGCTACCTTGATATCATCCTGGGAAAAT  450

seq1  GCTTATTTGAGTATATGGTTTAATTTTTACTAATTAATTGCTTTCTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTGAGTATATGGTTTAATTTTTACTAATTAATTGCTTTCTTCCT  500

seq1  TTGGATGTGTTGGAGTTCTTAAAAAATAAATTTTATCCTGATAGTGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTGTTGGAGTTCTTAAAAAATAAATTTTATCCTGATAGTGGTGC  550

seq1  CAGGTATCCTAAGACCAGCACAAGCTCAGATTACACAAATTCTTAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATCCTAAGACCAGCACAAGCTCAGATTACACAAATTCTTAACATG  600

seq1  GAGGACCTGGGAAGCTATTGGTGATTGACAGCTGCTAGGACAGGAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTGGGAAGCTATTGGTGATTGACAGCTGCTAGGACAGGAGAGTG  650

seq1  AATTTTCACTATAGGATGAATGAGGTTAGGTAGAGCACATTCCAGTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCACTATAGGATGAATGAGGTTAGGTAGAGCACATTCCAGTAGAG  700

seq1  GACCGCACACCCAAGAGAACATTAGCAGTACAAAATAGACTTAATAGGGT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACCGCACACCCAAGAGAACATTAGCAGTACAAAATAGACTTAATA-GGT  749

seq1  TCAAAAATTAAGTACTCAAAGTAGAGTAGGTGTTGAGGAAGGACACCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTAAGTACTCAAAGTAGAGTAGGTGTTGAGGAAGGACACCTCT  799

seq1  TGGCTATATTTAGGGGGAAGGTGAATACAATAATAACCACAATATATGAA  850
      ||||||||||||||||||| ||| |||| ||||||||||| |||||||||
seq2  TGGCTATATTTAGGGGGAA-GTG-ATAC-ATAATAACCAC-ATATATGAA  845

seq1  ATTCTCATGGCTAATAAGAATACTAAATATTTTAAACACGAATCCTTTTG  900
      |||||||||||||||||| |||||||||| |||||||||||   ||||||
seq2  ATTCTCATGGCTAATAAG-ATACTAAATA-TTTAAACACGA--TCTTTTG  891

seq1  TGAGATTACTAAATATCTCCTCACACAATACACTAAATATTTATCTTCTA  950
      |||||||||| ||||||| ||||||| |||||||||||||||||||||| 
seq2  TGAGATTACT-AATATCT-CTCACAC-ATACACTAAATATTTATCTTCTT  938

seq1  TCTGTAGTGTCTTTCACAGAACAAAGCATTTACATTTCAATATGCATCAT  1000
      ||||||||||| ||||||||   ||||||||||||||| |||||||||||
seq2  TCTGTAGTGTC-TTCACAGA--CAAGCATTTACATTTC-ATATGCATCAT  984

seq1  TAAAGAACTCTGCATACCTTAATCCATGG-CATAAAAAAATTTGTGTTAT  1049
        |||||||||||| ||  | || ||||| |||||||    |||||||||
seq2  --AAGAACTCTGCA-AC--TTATTCATGGCCATAAAA----TTGTGTTAT  1025

seq1  GCTACC  1055
      ||||||
seq2  GCTACC  1031