BAC Information

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BAC

Clone NameB6Ng01-050J20
Chromosome14 (Build37)
Map Location 69,220,713 - 69,221,822
singlet/doubletsinglet
Overlap genenone
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1
Downstream geneAdam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050J20.b
ACCDH874506
length1,085
definitionDH874506|Mus musculus domesticus DNA, BAC clone: B6Ng01-050J20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctatctaccatttgtccttttggaatatatgttctattgccttg
aactaagcatgtccaaaaatgtgtccgacatctttctttatgtaatgatg
acattatgctgagcatgcttaggaagagagtcagtcatccacaactttct
atatcattatttatagaaattataaagaaaaatcctcatacttccttgtt
ttggggtatacagttattgctttagatacaatttcaggttctcctcccta
ctgtaggaataaatatttattgttttatttcttggctgcacttgtcttgg
gctttgtattcaacaagatgtaagctccctgaattaggttacaatttatt
taaagaataaaatgatttatccctcttggagaaagcataattcttgaggt
taaaattgccctctcatactagaggaccttgtggtctagtgtgatactta
tacaaggagactgttataactgttcaatatatgtcaaagccttcagattt
caagaaaactacttaataaataggtaatacacaaagaaaaagtgtataaa
taaaagctcacctaggatatatgccaacatacccatctagcattgaaaat
ttcccttgtggttgccagtgtcacctgcaaagagccttcagcctttcttg
gaaattacaaccatttataaaaacaatcctgcctaaggcctcatctccgt
tggtagaactgttctttgtggttgattgccattagagaataaaggctttt
tctttttattctgattttgctccattctaatactcctgccatgatcaaac
ctggagactggcaagttgaagccttcactgagacatactaagccctcctt
tatgctgcccactcttgcttcctcacttcccatcacaccaacagtagcat
gaacacacttcaaagtcagtttgctaacagtctcagatctgctctcagta
cacagacttcaacacagacttcagagatgatatttgtgtgatttcatcat
gcatgtactttgccttacttagcaaggctgagagtgatactgtatacttt
gcagaaaagagttctggaaaggactatcactgcta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69220713_69221822
seq2: B6Ng01-050J20.b_45_1129

seq1  GAATTCCTATCTACCATTTGTCCTTTTGGAATATATGTTCTATTGCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTACCATTTGTCCTTTTGGAATATATGTTCTATTGCCTTG  50

seq1  AACTAAGCATGTCCAAAAATGTGTCCGACATCTTTCTTTATGTAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCATGTCCAAAAATGTGTCCGACATCTTTCTTTATGTAATGATG  100

seq1  ACATTATGCTGAGCATGCTTAGGAAGAGAGTCAGTCATCCACAACTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGCTGAGCATGCTTAGGAAGAGAGTCAGTCATCCACAACTTTCT  150

seq1  ATATCATTATTTATAGAAATTATAAAGAAAAATCCTCATACTTCCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTATTTATAGAAATTATAAAGAAAAATCCTCATACTTCCTTGTT  200

seq1  TTGGGGTATACAGTTATTGCTTTAGATACAATTTCAGGTTCTCCTCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTATACAGTTATTGCTTTAGATACAATTTCAGGTTCTCCTCCCTA  250

seq1  CTGTAGGAATAAATATTTATTGTTTTATTTCTTGGCTGCACTTGTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAATAAATATTTATTGTTTTATTTCTTGGCTGCACTTGTCTTGG  300

seq1  GCTTTGTATTCAACAAGATGTAAGCTCCCTGAATTAGGTTACAATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTATTCAACAAGATGTAAGCTCCCTGAATTAGGTTACAATTTATT  350

seq1  TAAAGAATAAAATGATTTATCCCTCTTGGAGAAAGCATAATTCTTGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATAAAATGATTTATCCCTCTTGGAGAAAGCATAATTCTTGAGGT  400

seq1  TAAAATTGCCCTCTCATACTAGAGGACCTTGTGGTCTAGTGTGATACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCCCTCTCATACTAGAGGACCTTGTGGTCTAGTGTGATACTTA  450

seq1  TACAAGGAGACTGTTATAACTGTTCAATATATGTCAAAGCCTTCAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGAGACTGTTATAACTGTTCAATATATGTCAAAGCCTTCAGATTT  500

seq1  CAAGAAAACTACTTAATAAATAGGTAATACACAAAGAAAAAGTGTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAACTACTTAATAAATAGGTAATACACAAAGAAAAAGTGTATAAA  550

seq1  TAAAAGCTCACCTAGGATATATGCCAACATACCCATCTAGCATTGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTCACCTAGGATATATGCCAACATACCCATCTAGCATTGAAAAT  600

seq1  TTCCCTTGTGGTTGCCAGTGTCACCTGCAAAGAGCCTTCAGCCTTTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGTGGTTGCCAGTGTCACCTGCAAAGAGCCTTCAGCCTTTCTTG  650

seq1  GAAATTACAACCATTTATAAAAACAATCCTGCCTAAGGCCTCATCTCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACAACCATTTATAAAAACAATCCTGCCTAAGGCCTCATCTCCGT  700

seq1  TGGTAGAACTGTTCTTTGTGGTTGATTGCCATTAGAGAATAAAGGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAACTGTTCTTTGTGGTTGATTGCCATTAGAGAATAAAGGCTTTT  750

seq1  TCTTTTTATTCTGATTTTGCTCCATTCTAATACTCCTGCCATGATCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATTCTGATTTTGCTCCATTCTAATACTCCTGCCATGATCAAAC  800

seq1  CTGGAGACTGGCAAGTTGAAGCCTTCACTGAGACATACTAAGCCCTCCTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGAGACTGGCAAGTTGAAGCCTTCACTGAGACATACTAAGCCCTCC-T  849

seq1  TTATGCTGCCCACTCTTGCTTCCTCACTTCCCATCACACCAACAGTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGCCCACTCTTGCTTCCTCACTTCCCATCACACCAACAGTAGCA  899

seq1  TGAACACACTTCAAAGTCAGTTTGCTAACAGTCCTCAGAATCTGCTCCTC  950
      |||||||||||||||||||||||||||||||| ||||| ||||||||   
seq2  TGAACACACTTCAAAGTCAGTTTGCTAACAGT-CTCAG-ATCTGCTC--T  945

seq1  CAGTAACACAGACTTCAACACAAGGAACTTCAGGAAGATGATATTTGTGT  1000
      |||| |||||||||||||||||    |||||||  |||||||||||||||
seq2  CAGT-ACACAGACTTCAACACA---GACTTCAG--AGATGATATTTGTGT  989

seq1  GATTTTCCATCATTGCATGTACTTTGCCCTTAACCTTAGCCAAAGGGCTG  1050
      |||||  ||||| ||||||||||||| |||||  ||||||   | |||||
seq2  GATTT--CATCA-TGCATGTACTTTG-CCTTA--CTTAGC---AAGGCTG  1030

seq1  AGAAGTGATACTGTATTAACTTTGGCAGAAAAGAGTTTCTGAAAAGGACT  1100
      || |||||||||||||  ||||| ||||||||||| ||||| ||||||||
seq2  AG-AGTGATACTGTAT--ACTTT-GCAGAAAAGAG-TTCTGGAAAGGACT  1075

seq1  ATCACTGCTA  1110
      ||||||||||
seq2  ATCACTGCTA  1085