BAC Information

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BAC

Clone NameB6Ng01-050L05
Chromosome14 (Build37)
Map Location 123,836,881 - 123,970,477
singlet/doubletdoublet
Overlap geneVgcnl1
Upstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L05.bB6Ng01-050L05.g
ACCDH874567DH874568
length1,102306
definitionDH874567|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L05, 5' end.DH874568|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,969,339 - 123,970,477)(123,836,881 - 123,837,144)
sequence
gaattcttattgaaatggcaactgtgttattttgaaagccaaatttattt
cttgaatttgatgagggaagcttaagtggaggattttatagttaaggggg
agtatgcatcagtctacagacacttcagaatagtgaattaaaatctatga
actagagtttcaggaaagatctgtgaaagccttacattgttaagaaattt
aactaagtgacacagttataaccctctgacagagtttaatacagaagtag
actgaaaaggacaacatggtacttctttttaagtcaattttgcaaatcac
atctatgaattttattcttatattttaatatgccctcaacttgacttctg
acattgtggctagatggcatccattcactcattttatttgatgaaatgat
agtttgttatttcacaaaaatctagaagtcagctgatattgtcaatgtgt
tctaacttaatccatcctcaaaaaccaatcttaagactctgtccttgtga
ttcacaagcacaggcctcttagggaaaattgactcccaaaagtgagcaat
aatctacagatattgtgaaagatgagatgtacagatttggataggcagca
tgagacatagtctaatgatcacactgggcagactagaatgcaggattcta
gctcatgccttcaatagacgtgctcatatcttttgtaaagagtgtactac
attcaaggtctcacccacctttgaaccatctctatgtcacattgctcaaa
tgagtcataccctattttaaatgcttccattatttccaaattcaaagtgc
agttgtgttcaagttagttcatctttctgaactattacatacaaataact
taatgaataaaaatcacaatctctctttgtgaagatgcccccgtataaaa
gttctgggtgaggactgggggagcttgagagatcagtttagagtgtttcc
tgagcagtagactcccattaacagacttttgttcttgttttttgcaccca
tctgtagatttagctcttgaaagaagtgcatctttcattttctgtctcag
cttgcatgtctagctcttatgagtctttgtaaattgatatggtatagaaa
aa
tccatctcacttgagttgcaggggcaaggatgtcttcatggtgagctttt
caagtaattttgggtccttttatgttttcatctaattattcattttattg
tttttaattctatgtaagtatgcacacatgcccttgcttgtagtaaactc
tcattggtgatgtctctttacatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatagagatatatatatata
gagatatatacacacataggcatgtgtgcatacatacatatatatataca
cacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123969339_123970477
seq2: B6Ng01-050L05.b_45_1146 (reverse)

seq1  TTTTTCTATACCATTATTCAATATTTACAAAGGACTCACTATGAGCTAGA  50
      ||||||||||||||   |||  ||||||||| |||||| || ||||||||
seq2  TTTTTCTATACCAT--ATCA--ATTTACAAA-GACTCA-TAAGAGCTAGA  44

seq1  CATTGCAAAGGCCCTGGAGACAGGAAAATGAAAAGATGCACTTTCTGTTT  100
      || |||||  ||    |||||| ||||||| ||||||||||||     ||
seq2  CA-TGCAA--GC---TGAGACA-GAAAATG-AAAGATGCACTT----CTT  82

seq1  TCAAAGAGCTTAAATCTTACAGATGGGTGCAGAAAACAAGAACAAAAAGT  150
      || |||||| |||||| |||||||||||||| ||||||||||| ||||||
seq2  TC-AAGAGC-TAAATC-TACAGATGGGTGCAAAAAACAAGAAC-AAAAGT  128

seq1  CTGGTTTAATGGGAGTCTACTGCCTCAGGGAAACAACCTCCTAAAACTGA  200
      |||  ||||||||||||||||| |||| |||||||  ||    |||||||
seq2  CTG--TTAATGGGAGTCTACTG-CTCA-GGAAACACTCT----AAACTGA  170

seq1  TCTTCTCAAGCTTCCCCCAGTTCCCTCACCCAGAACTTTTTATACGGGGG  250
      || |||||||| |||||||||  ||||||||||||| |||||||||||||
seq2  TC-TCTCAAGC-TCCCCCAGT--CCTCACCCAGAAC-TTTTATACGGGGG  215

seq1  CATTCTTTCACAAAGAGAGATTGTGATTTTTATTCATTAAGTTATTTGTA  300
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT--CTTCACAAAGAGAGATTGTGATTTTTATTCATTAAGTTATTTGTA  263

seq1  TGTAATAGTTCAGAAAGATGAACTAACTTGAACACAACTGCACTTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGTTCAGAAAGATGAACTAACTTGAACACAACTGCACTTTGAAT  313

seq1  TTGGAAATAATGGAAGCATTTAAAATAGGGTATGACTCATTTGAGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATAATGGAAGCATTTAAAATAGGGTATGACTCATTTGAGCAATG  363

seq1  TGACATAGAGATGGTTCAAAGGTGGGTGAGACCTTGAATGTAGTACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGAGATGGTTCAAAGGTGGGTGAGACCTTGAATGTAGTACACTC  413

seq1  TTTACAAAAGATATGAGCACGTCTATTGAAGGCATGAGCTAGAATCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAAGATATGAGCACGTCTATTGAAGGCATGAGCTAGAATCCTGC  463

seq1  ATTCTAGTCTGCCCAGTGTGATCATTAGACTATGTCTCATGCTGCCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTCTGCCCAGTGTGATCATTAGACTATGTCTCATGCTGCCTATC  513

seq1  CAAATCTGTACATCTCATCTTTCACAATATCTGTAGATTATTGCTCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGTACATCTCATCTTTCACAATATCTGTAGATTATTGCTCACTT  563

seq1  TTGGGAGTCAATTTTCCCTAAGAGGCCTGTGCTTGTGAATCACAAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTCAATTTTCCCTAAGAGGCCTGTGCTTGTGAATCACAAGGACA  613

seq1  GAGTCTTAAGATTGGTTTTTGAGGATGGATTAAGTTAGAACACATTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTAAGATTGGTTTTTGAGGATGGATTAAGTTAGAACACATTGACA  663

seq1  ATATCAGCTGACTTCTAGATTTTTGTGAAATAACAAACTATCATTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGCTGACTTCTAGATTTTTGTGAAATAACAAACTATCATTTCATC  713

seq1  AAATAAAATGAGTGAATGGATGCCATCTAGCCACAATGTCAGAAGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGAGTGAATGGATGCCATCTAGCCACAATGTCAGAAGTCAAG  763

seq1  TTGAGGGCATATTAAAATATAAGAATAAAATTCATAGATGTGATTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCATATTAAAATATAAGAATAAAATTCATAGATGTGATTTGCAA  813

seq1  AATTGACTTAAAAAGAAGTACCATGTTGTCCTTTTCAGTCTACTTCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACTTAAAAAGAAGTACCATGTTGTCCTTTTCAGTCTACTTCTGTA  863

seq1  TTAAACTCTGTCAGAGGGTTATAACTGTGTCACTTAGTTAAATTTCTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTGTCAGAGGGTTATAACTGTGTCACTTAGTTAAATTTCTTAA  913

seq1  CAATGTAAGGCTTTCACAGATCTTTCCTGAAACTCTAGTTCATAGATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAGGCTTTCACAGATCTTTCCTGAAACTCTAGTTCATAGATTTT  963

seq1  AATTCACTATTCTGAAGTGTCTGTAGACTGATGCATACTCCCCCTTAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTATTCTGAAGTGTCTGTAGACTGATGCATACTCCCCCTTAACT  1013

seq1  ATAAAATCCTCCACTTAAGCTTCCCTCATCAAATTCAAGAAATAAATTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCTCCACTTAAGCTTCCCTCATCAAATTCAAGAAATAAATTTG  1063

seq1  GCTTTCAAAATAACACAGTTGCCATTTCAATAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAATAACACAGTTGCCATTTCAATAAGAATTC  1102

seq1: chr14_123836881_123837144
seq2: B6Ng01-050L05.g_67_378

seq1  GAATTCTCCATCTCACTTGAGTTGCAGGGGCAAGGATGTCTTCATGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTCACTTGAGTTGCAGGGGCAAGGATGTCTTCATGGTGA  50

seq1  GCTTTTCAAGTAATTTTGGGTCCTTTTATGTTTTCATCTAATTATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAAGTAATTTTGGGTCCTTTTATGTTTTCATCTAATTATTCATT  100

seq1  TTATTGTTTTTAATTCTATGTAAGTATGCACACATGCCCTTGCTTGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTTTAATTCTATGTAAGTATGCACACATGCCCTTGCTTGTAGT  150

seq1  AAACTCTCATTGGTGATGTCTCTTTACATATATATATATATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCATTGGTGATGTCTCTTTACATATATATATATATATATATATA  200

seq1  TATATATATATATATATATATATATATATGTGTATATATATATATATATA  250
      ||||||||||||||||||||||||||||| | |||||||| | |||||||
seq2  TATATATATATATATATATATATATATATATATATATATAGAGATATATA  250

seq1  TATATACATACATA------------------------------------  264
      |||||| | | |||                                    
seq2  TATATAGAGATATATACACACATAGGCATGTGTGCATACATACATATATA  300

seq1  ------------  264
                  
seq2  TATACACACATA  312